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36 changes: 36 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -16,6 +16,42 @@ followed by flat Keep-a-Changelog categories. API consumers should scan

_(Release-manager scratchpad. Populated at release-cut time.)_

## [8.0.27.01] - 2026-08-18

**Highlights.** The desktop's BioModels Database tab stops steering people away from models
VCell can actually open: 55 of the 1057 entries were marked "not compatible with vCell" when
they import perfectly well, a list last curated by hand in May 2025 and further out of date
after the import fixes in 8.0.26.01. It is now derived from the nightly run over the real
collection, and a test fails if the two ever disagree. Separately, saving a model can no
longer be broken by the server's own housekeeping: a cleanup sweep that runs every fifteen
minutes could delete a row a save was still in the middle of writing, failing the save with a
database integrity error.

### Fixed
- The BioModels Database tab marks 55 more models supported — they always imported, the list
said otherwise. Three that it claimed were supported and that VCell cannot open are now
marked accordingly. Supported goes from 928 to 983 of 1057. (#1990)
- Saving a model no longer fails with `ORA-02291: integrity constraint violated - parent key
not found`. Saving a BioModel writes its parts in several transactions and links them in a
later one, so for a fraction of a second a freshly written part belongs to nothing yet — and
the housekeeping sweep that removes parts belonging to nothing would collect it, breaking the
save. Rows are now left alone for an hour before they can be collected. Production hit this
twice in the two weeks before the fix. (#1993, issue #1992)
- The same race aborted the housekeeping sweep itself from the other side, with `ORA-02292:
child record found`, a few times a day. (#1993, issue #1961)

### Added
- Internal: the BioModels Database supported-model list is regenerated from the nightly results
rather than hand-maintained, and `BioModelsNetInfoTest` fails when the checked-in list and the
nightly disagree, so it cannot silently rot as the importer improves. (#1990)
- Internal: the cleanup sweep is now covered in both SQL dialects — against PostgreSQL on every
push, and against a real Oracle in a new `Oracle_IT` regression group gated by the merge queue
and the nightly. Its SQL is assembled by string concatenation and had no test at all, in
either dialect. (#1993)

### Notes for API consumers
No API changes.

## [8.0.26.01] - 2026-08-18

**Highlights.** More published models import. A parameter in an SBML model may depend on a
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10 changes: 10 additions & 0 deletions release-notes/major/8.0.0.md
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Expand Up @@ -202,6 +202,16 @@ thread-safety fix in unit-of-measurement formatting.)_
construct and where. An expression referring to a reaction — which SBML defines as
that reaction's rate — reported only that a name was "not found", which reads like
a typo and mentions neither rates nor the unsupported construct (8.0.26.01).
- The BioModels Database tab no longer warns you off models VCell can open. The
supported/not-supported list behind it was curated by hand and had drifted: 55 of
the 1057 entries were marked "not compatible with vCell" when they import fine.
It is now derived from the nightly run over the real collection, so it keeps pace
with the importer instead of aging (8.0.27.01).
- Saving a model can no longer be broken by the server's own housekeeping. A cleanup
sweep removes model parts that belong to nothing; because a save writes its parts
before linking them together, a part could be collected in the moment between, and
the save failed with a database integrity error. Parts are now left alone for an
hour before they can be collected (8.0.27.01).

## API and integration changes

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