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Run the Quarkus test suite against Oracle too: 55 dialect branches across 33 files are only ever tested on PostgreSQL

Status: Open.

#1994 In virtualcell/vcell;

· jcschaff opened on Aug 19, 2026

SBMLExporter drops SimulationContextParameter; exporting it needs a rule for names that shadow model parameters

Status: Open.

#1984 In virtualcell/vcell;

· jcschaff opened on Aug 17, 2026

Four BMDB models fail at a second point, revealed once the COPASI annotation cast was fixed

Status: Open.

#1981 In virtualcell/vcell;

· jcschaff opened on Aug 17, 2026

Missing simulation datasets: 5 confirmed losses on published models, all 2004-2005 — find the extent and the cause

Status: Open.

#1980 In virtualcell/vcell;

· jcschaff opened on Aug 17, 2026

JSBML fork upgrade plan: catch up to upstream, and what to send back

Status: Open.

#1978 In virtualcell/vcell;

· jcschaff opened on Aug 17, 2026

ASCIIExporter still needs native HDF5 for writing — blocked on jhdf incremental chunk writes (jhdf#654)

Status: Open.

#1964 In virtualcell/vcell;

· jcschaff opened on Aug 15, 2026

User cannot copy / paste overrided parameters (in edit simulation panel) when the override is for a parameter scan

Java-basedPull requests that update Java codePull requests that update Java code

User Interface

Status: Open.

#1930 In virtualcell/vcell;

· CodeByDrescher opened on Aug 13, 2026

regression-gate never gates: the merge queue is bypassed by admin merges

Status: Open.

#1926 In virtualcell/vcell;

· jcschaff opened on Aug 13, 2026

Normalize environment naming: four vocabularies for three environments, and the names mislead

Status: Open.

#1922 In virtualcell/vcell;

· jcschaff opened on Aug 13, 2026

Rename the 12 unprefixed config env vars to VCELL_* (needs vcell-fluxcd coordination)

Status: Open.

#1921 In virtualcell/vcell;

· jcschaff opened on Aug 13, 2026

BIOMD0000000459/460/461: results CSV export fails to map an SBML compartment size to a VCell structure size parameter

Status: Open.

#1905 In virtualcell/vcell;

· jcschaff opened on Aug 12, 2026

Hdf5PostProcessor rejects statistic name 'mean' (written by the chombo solver) and aborts all data access for the run

Status: Open.

#1894 In virtualcell/vcell;

· jcschaff opened on Aug 11, 2026