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Pull requests: nf-core/modules

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Pull requests list

Update sourmash sketch to remove hardcoded optional argument
#12999 opened Sep 19, 2026 by jfy133 Member Loading…
2
Read gzipped input in four modules used for phylogenetic placement
#12991 opened Sep 18, 2026 by erikrikarddaniel Member Loading…
12 of 14 tasks
1
Add custom/taxonomytree module and taxonomy2phylogeny subworkflow
#12977 opened Sep 16, 2026 by erikrikarddaniel Member Loading…
13 of 17 tasks
8
freyja: update to 2.0.4
#12964 opened Sep 15, 2026 by pditommaso Contributor Loading…
3 tasks done
5
Smudgeplot all size/m
#12960 opened Sep 15, 2026 by DLBPointon Contributor Loading…
@DLBPointon
metaproviz/internalstandard module #12957
#12958 opened Sep 15, 2026 by ChristinaSchmidt1 Loading…
2 of 17 tasks
1
8
Update to topic universc
#12955 opened Sep 14, 2026 by LouisLeNezet Contributor Loading…
17 tasks
1
@LouisLeNezet
3
Added new module arcane/express
#12952 opened Sep 14, 2026 by LeonHornich Contributor Loading…
12 of 14 tasks
Add crabs/merge module
#12930 opened Sep 13, 2026 by xHaMMaDy Contributor • Draft
14 tasks done
1
fix(manta): pin working biocontainer to avoid segfault
#12929 opened Sep 11, 2026 by kanishkanandhkumar Loading…
1 of 2 tasks
1
1
New module: motifmatchr/matchmotifs
#12927 opened Sep 10, 2026 by PFRoux Contributor Loading…
1
Add sativaepang/* modules: reference, lootasks, looplace, looscore
#12910 opened Sep 9, 2026 by erikrikarddaniel Member Loading…
13 of 14 tasks
31
CI: test composite change detection action
#12898 opened Sep 7, 2026 by adamrtalbot Contributor • Draft
3 of 7 tasks
fix(clustalo/align): wait for compression and propagate pigz failures
#12894 opened Sep 6, 2026 by dnncha Loading…
11
New module: xengsort/classify Ready for Review
#12864 opened Sep 1, 2026 by LeonHornich Contributor Loading…
12 of 14 tasks
5
Add STAR Suite alignment and genome generation modules
#12826 opened Aug 27, 2026 by lhhunghimself Loading…
11 of 12 tasks
1
Add parabricks/deepsomatic size/m
#12797 opened Aug 26, 2026 by SPPearce Contributor • Draft
3
Remove fixed UMI-tools seeds Do not merge yet
#12662 opened Aug 12, 2026 by pinin4fjords Member Loading…
5
Add STRAGLR module
#12644 opened Aug 10, 2026 by lukejroche Loading…
2 tasks
1
3
Add subworkflow for gridss somatic structural variant calling
#12574 opened Aug 4, 2026 by imsarath Contributor Loading…
14 of 17 tasks
1
@imsarath
12
Swap repeatmodeler to topics conda-fail size/m
#12513 opened Aug 3, 2026 by SPPearce Contributor • Draft
17 tasks
2
Update dependency prettier to v3.9.7 size/xs
#12487 opened Aug 1, 2026 by renovate Bot Loading…
2 tasks
Migrate amulety to topics gpu module uses GPU help wanted Extra attention is needed
#12481 opened Jul 31, 2026 by atrigila Contributor • Draft Adopt topic channels in all nf-core modules
4
Migrate universc versions topic container-issue Ready for Review
#12479 opened Jul 31, 2026 by atrigila Contributor Loading… Adopt topic channels in all nf-core modules
canvas/germline: Added tests and missing inputs, some cleanup Ready for Review
#12462 opened Jul 29, 2026 by Schmytzi Contributor Loading…
9 of 17 tasks
25
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