Creates publication quality dot plot from nucmer .delta output using ggplot2
- mplotter.cpp slightly adapted from the original code
- Compile the .cpp file on your platform with: c++ mplotter.cpp -o mplotter
- added bash script to run all original commands in one GO
- added plotting in the bash script
To run the script, move to the folder containing the nucmer .delta file and launch the bash script
mummer2ggplot2.sh nucmer.delta
After running, the R script can be tuned to change aspect and legends and re-run
required:
- mummer4 (https://github.com/mummer4/mummer)
- mplotter (our version) and mummer2ggplot2.sh in the PATH and both executable
- R and ggplot2 available
example output
Please report any inconsistencies in the Issues page above