treeppl · ThimotheeV · Jan 23, 2026 · Jan 23, 2026 · Jan 23, 2026 · Jan 23, 2026
diff --git a/.gitignore b/.gitignore
@@ -4,6 +4,9 @@
 # Production
 /build
 
+#Auto-generate
+/docs/model-library
+
 # Generated files
 .docusaurus
 .cache-loader

diff --git a/README.md b/README.md
@@ -22,7 +22,14 @@ Then run command
 $ npm install
 ```
 
-to install all dependent packages (including the Docusaurus libraries).
+to install all dependent packages (including the Docusaurus libraries) and 
+
+```
+$ npm run pull-treeppl-models
+```
+
+to pull model descriptions from TreePPL repository. 
+This last command can be done each time you want to update model descriptions.
 
 ### Local Development
 

diff --git a/docs/.gitignore b/docs/.gitignore
diff --git a/docs/model-library/div.md b/docs/model-library/div.md
diff --git a/docs/model-library/host-repertoire.md b/docs/model-library/host-repertoire.md
diff --git a/docs/model-library/index.md b/docs/model-library/index.md
diff --git a/docs/model-library/metabarcoding.md b/docs/model-library/metabarcoding.md
diff --git a/docs/model-library/tree-inference.md b/docs/model-library/tree-inference.md
diff --git a/docs/tutorials/pigeons.md b/docs/tutorials/pigeons.md
@@ -12,7 +12,7 @@ import TabItem from '@theme/TabItem';
 In this tutorial we will demonstrate how to use the Julia package [Pigeons.jl](https://pigeons.run/stable/) to parallelize and improve MCMC inference in TreePPL with parallel tempering.
 Parallel tempering is particularly powerful for combinatorial, multimodal and overparametrized posteriors, which abound in statistical phylogenetics.
 
-We will use the [constant rate birth-death](../examples/div.md#constant-rate-birth-death) (CRBD) model as the running example.
+We will use the [constant rate birth-death](../model-library/diversification.md#constant-rate-birth-death) (CRBD) model as the running example.
 
 ### What is parallel tempering and Pigeons?
 MCMC algorithms are inherently sequential algorithms, since the next iteration depends explicitly on what we are computing in the current.