reference-genomes

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Rapid determination of appropriate reference genomes.

bioinformatics microbiology wgs mash ani refseq reference-genomes

Pipeline for creating comprehensive viral reference sets.

MetaSBT public databases

Snakemake workflow for downloading Ensembl reference genomes for use in downstream bioinformatics analyses

Benchmarking of how the quality of the reference genome assembly affects the discovery of structural variants, using aligners: Minimap2 & Winnowmap

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