exaspim

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Processing and packaging of exaSPIM neuron SWC reconstructions into per-cell AIND derived data assets.

Code Ocean capsule: packages exaSPIM SWC pipeline outputs into per-cell AIND derived data assets.

Code Ocean pipeline: exaSPIM neuron reconstructions to CCF space, one AIND derived asset per neuron

nextflow swc aind neuron-reconstruction code-ocean exaspim-swc-processing exaspim

Code Ocean capsule: resamples exaSPIM reconstructions and annotates CCF-space outputs.

Code Ocean capsule: transforms exaSPIM SWC reconstructions into CCF space.

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