entity-trajectory

A pocket volume analyzer for use in protein modeling.

Solvation Structure and Thermodynamic Mapping

WebGL protein viewer

PyRod - Tracing water molecules in molecular dynamics simulations

End-To-End Molecular Dynamics (MD) Engine using PyTorch

🏗️ Statistical models for biomolecular dynamics 🏗️

Differentiable, Hardware Accelerated, Molecular Dynamics

Detect and characterize binding pockets from molecular simulations.

Public development project of the LAMMPS MD software package

OpenMM is a toolkit for molecular simulation using high performance GPU code.

MD pharmacophores and virtual screening

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

An open library for the analysis of molecular dynamics trajectories

MDAnalysis is a Python library to analyze molecular dynamics simulations.

A comprehensive macromolecular library

🚂 Python API for Emma's Markov Model Algorithms 🚂

Powerful, efficient particle trajectory analysis in scientific Python.

Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation

Dynamic pharmacophore modeling of molecular interactions

Fast and All atom Protein-Ligand Interaction Profiler