Image-processing software for cryo-electron microscopy

Computational Crystallography Toolbox

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

A curated list of awesome computational cryo-EM methods.

Self-supervised learning for isotropic cryoET reconstruction

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

A comprehensive foundation model for cryo-EM image processing

Leveraging Structural Priors and Constraints for Cryo-EM Heterogeneous Reconstruction

Deep learning for cryo-EM maps post-processing

DiffModeler: a diffusion model based protein complex structure modeling tool.

Python library that enables scripting access to CryoSPARC, a cryo-EM software package.

pytorch implementation of noise2noise for Cryo-EM image denoising

cryo-ET particle picking by representation and metric learning

Xmipp is a suite of image processing programs, primarily aimed at single-particle 3D electron microscopy.

ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.

register 3D point clouds using rotation, translation, and scale transformations.

deep structural disentanglement

High Throughput Electron Microscopy Image Processing Software

Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning