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cobratoolbox

Here are 4 public repositories matching this topic...

opencobra / COBRA.tutorials

Repository of tutorials for The COBRA Toolbox

tutorials reconstruction systemsbiology cobra metabolic-models constraint-based-modeling cobratoolbox

Updated Aug 24, 2026
MATLAB

BigDataInSilicoBiologyGroup / IgemRNA

IgemRNA is an open access toolbox for transcriptome data statistical and biochemical network topology-based analysis. IgemRNA was developed in the MATLAB environment in order to take advantage of the up-to-date and most commonly distributed GSM modelling tool Cobra Toolbox 3.0 and spreadsheet file capabilities.

tutorial reconstruction transcriptomics metabolic-models omics-data-integration genome-scale-models cobratoolbox

Updated May 5, 2022
MATLAB

BaloniLab / iMiceBrain

Genome-scale metabolic model of mouse brain (iMiceBrain) and case study of Tricyclic pyrone drug

bioinformatics toxicology computational-biology drugs predictive-analysis predictive-modeling bioinformatics-analysis alzheimers-disease cobrapy metabolic-models flux-balance-analysis metabolic-reconstruction metabolic-flux-analysis bioinformatics-tool cobratoolbox flux-sampling flux-variability alzheimers-research metabolic-modeling

Updated May 29, 2026
Jupyter Notebook

BaloniLab / PFAS_Congeners_Mouse_GEMs

Metabolic simulation of lipid and energy pathways in mouse Genome-scale model and investigation of PFAS congeners' toxicity

systems-biology computational-biology predictive-analysis predictive-modeling cobrapy metabolic-models metabolic-reconstruction metabolic-flux-analysis cobratoolbox pfas pfas-toxicity bioinfromatics

Updated Jun 10, 2025
Jupyter Notebook

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