docs: add interoperability page - #1180
Open
jan-glx wants to merge 1 commit into
Open
Conversation
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #1180 +/- ##
=======================================
Coverage 92.41% 92.41%
=======================================
Files 52 52
Lines 7874 7874
=======================================
Hits 7277 7277
Misses 597 597 🚀 New features to boost your workflow:
|
jan-glx
marked this pull request as draft
August 18, 2026 16:05
Contributor
Author
|
Updated: the file-format section now links Flagging for visibility: that repository is still private, so the link will 404 for anyone outside the org until it is made public. The design-document link next to it keeps the section useful in the meantime. |
Closes scverse#1176. Adds a short Interoperability page listing non-Python interfaces to the SpatialData on-disk format, mirroring the equivalent pages in anndata and mudata so the style is consistent across the three data structures. Also notes that the format builds on OME-NGFF and points at the design document for the current on-disk layout.
jan-glx
force-pushed
the
docs/interoperability
branch
from
August 18, 2026 16:43
aa81aa9 to
9c26df3
Compare
jan-glx
marked this pull request as ready for review
August 18, 2026 16:46
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Closes #1176.
Adds a short
Interoperabilitypage listing the non-Python interfaces to the SpatialData on-disk format, following the structure of the equivalent page in mudata and the one in anndata, as requested by @Zethson so the style is consistent across the three data structures.Sections: R (spatialdataR), JavaScript and TypeScript (SpatialData.js, Vitessce), and a short File format note (to be expanded into its on tab later).
napari-spatialdatais not listed as it's python, relies on the spatialdata python package and does not read on-disk data directly