Update fbc version 3 information, add sbml2cellml converter - #73
Merged
Merged
Conversation
- fbc package page: add notes on the Version 3 release, specification PDF, publication and third-party support - publications: add the fbc version 3 publication - sbml-package layout: read the release number from the release column instead of the version column - converters: add sbml2cellml to the "From CellML" and "To CellML" sections, link sbmlutils to its documentation - FAQ: recommend the 2020 Molecular Systems Biology paper as primary citation, update sbmlutils link - news: replace dead sbmlutils Read the Docs link
Collaborator
Author
|
Someone has to update the spreadsheet for fbc v3: https://docs.google.com/spreadsheets/d/1pa01Z72t1UKrjliAXBhxjjN1nnOf00gXcfm4_pWXOxA/edit?gid=0#gid=0 |
Collaborator
Author
|
@luciansmith Could you merge this. Documentation fixes and adding the fbc-v3 info. |
luciansmith
reviewed
Sep 28, 2026
luciansmith
approved these changes
Sep 28, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Changes
Follow-up outside this repository
The status table at the top of the fbc page is generated from the SBML Level 3 Package Status spreadsheet. The
fbcrow still describes Version 2 and needs to be updated (specification link, date, version 3, release 1, citation, DOI10.1515/jib-2026-0006). Note that theidentifiers.org/combine.specifications/sbml.level-3.version-1.fbc.version-3.release-1URL does not resolve yet, because the entry is missing incombine-org/combine-specifications.Testing
Built with the CI image
klakegg/hugo:0.68.0and checked the fbc, publications and converters pages in the browser.🤖 Generated with Claude Code