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1. b-vac b-vac Public

   B-vac is a standalone, offline Python-based tool for reverse-vaccinology-driven bacterial vaccine design. It screens bacterial proteomes through Localization, Non-Host Homolog, Virulence Factor, an…

   HTML

2. paampdb paampdb Public

   PAAMPdb is a curated database of experimentally reported antimicrobial peptides (AMPs) targeting Pseudomonas aeruginosa. It provides antimicrobial activity data, peptide information, structural mod…

   HTML

3. python-basics-for-life-scientists python-basics-for-life-scientists Public

   Python Programming Fundamentals for Life Scientists is an open-source, biological-first curriculum designed for researchers, students, and computational biologists. Learn core Python, data structur…

   Jupyter Notebook

4. tracereview tracereview Public

   TraceReview is an agentic AI system for literature reviews. It uses LangGraph and LLMs to plan research, retrieve and select papers, generate concise summaries, and produce structured reading cards…

   Python

5. B-Pan B-Pan Public

   Pan-genome analysis and COG-based functional annotation tool for bacterial proteomes. Built in Python with a Tkinter GUI. Performs core/accessory/unique gene classification and phylogenetic analysi…

   HTML

6. VacSol-ML-ESKAPE-Installable VacSol-ML-ESKAPE-Installable Public

   Machine learning framework for vaccine target discovery in ESKAPE pathogens — extracts sequence-based features and classifies candidate proteins with confidence scoring. Installable via pip, includ…

   JavaScript