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Installation Issue #593
Description
Activity
The error messages indicate that reticulate is not binding to the virtual env "r-reticulate", but rather, to the venv starter used,
~/../AppData/Local/Programs/Python/Python310. We'll have to figure out why.In a fresh R session, what is the output from running:
library(reticulate) use_virtualenv("r-reticulate") py_config()
If that succeeds, then likely the RStudio IDE is redirecting reticulate to select the "wrong" python installation. You can modify or disable this IDE feature under "Tools > Global Options > Python". My recommendation is to disable the IDE feature (uncheck the box, leave the text field empty"), and to do all reticulate/python managment from either a project local .Rprofile or .Renviron, or at the start of your project R scripts.
If that fails, then please post the full output from running these commands that venv from scratch, and we'll try to figure out the cause:
# restart R session, Ctrl+Shift+F10 tensorflow::install_tensorflow(envname = "r-reticulate", version = "release", new_env = TRUE) use_virtualenv("r-reticulate") py_config()
Hi Tomasz,
I sort of figured out that the issue had to do to with the interpreter and I also discovered the "Tools > Global Options > Python" settings. What I found worked on that specific computer was to allow the Python Interpreter to access virtual environments and I used this bit of code.
#make sure in global options the virtual environment is selected as a python interpreter #also make sure using a fresh R session #load libraries install.packages("tensorflow") install.packages("keras") library(reticulate) library(keras) library(tensorflow) #create virtual environment virtualenv_create("myenv") #use the virtual environment we names "myenv" use_virtualenv("myenv") #finally install the package in the same place install_keras(method="virtualenv", envname="myenv") #to the same for tensorflow use_virtualenv("myenv") install_tensorflow(method="virtualenv", envname="myenv") #test to see if actually works tensorflow::as_tensor("Hello World")After doing this and checking the "Global Options" I was able to start a new R session and the installation remained. However, I would like to solve it the proper way, because as soon as I tried on a colleagues computer I ran into other issues which may be due to an outdated version of Python i.e. 3.9 v. on my computer 3.10? (see below at the end of the thread)
So in a fresh R session I ran
library(reticulate) use_virtualenv("r-reticulate") Warning message: Previous request to `use_python("C:/Users/Hadarma/Documents/.virtualenvs/myenv/Scripts/python.exe", required = TRUE)` will be ignored. It is superseded by request to `use_python("C:/Users/Hadarma/Documents/.virtualenvs/r-reticulate/Scripts/python.exe")py_config() python: C:/Users/Hadarma/Documents/.virtualenvs/r-reticulate/Scripts/python.exe libpython: C:/Users/Hadarma/AppData/Local/Programs/Python/Python310/python310.dll pythonhome: C:/Users/Hadarma/Documents/.virtualenvs/r-reticulate version: 3.10.9 (tags/v3.10.9:1dd9be6, Dec 6 2022, 20:01:21) [MSC v.1934 64 bit (AMD64)] Architecture: 64bit numpy: C:/Users/Hadarma/Documents/.virtualenvs/r-reticulate/Lib/site-packages/numpy numpy_version: 1.24.3 tensorflow: C:\Users\Hadarma\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\__init__.p NOTE: Python version was forced by use_python() functionIs this the output expected?
When you say uncheck the box in "Tools > Global Options > Python" you mean uncheck "Automatically activate project-local Python environments" and not to select any Python Interpreter (see picture)
This is from my colleagues computer when running the same lines you requested:

Thanks so much!
Progress! It looks like you have things in a working state now. We should still aim to get rid of the warning.
Two notes:
-
There is no need to call both
install_tensorflow()andinstall_keras(). One or the other. (I know it's slightly confusing, and the story will change yet again withkeras3. When in doubt, useinstall_keras(), which will install tensorflow, along with some other commonly used packages. Preferinstall_tensorflow()if you want a more "minimal" installation where you'll be using only tensorflow. -
This warning (condensed) should be tracked down.
Warning message: Previous request to `use_python("myenv")` will be ignored. It is superseded by request to `use_python("r-reticulate")`Somewhere in your system setup, you have dueling python installation preference commands. They might be in
.Rprofileor in other scripts you are sourcing. It's better to get a handle on this now and make sure you are only pointing reticulate at a particular python once, from one location. This is purely a sanity-preserving recommendation.Note that in many situations, there is no need to point reticulate at a python, at all.
If you callinstall_keras(), it will create a venv that will automatically be discovered by reticulate. Similarly, if you want to make a project specific venv, you can doinstall_keras(envname = "./venv")and reticulate will automatically discover that also.This might be helpful: https://rstudio.github.io/reticulate/articles/versions.html#order-of-discovery
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- addedawaiting responseWaiting for issue author to respondWaiting for issue author to respond
on Mar 13, 2024 Hi Tomasz,
Thanks for the detailed response and tips!In the first attempt at installation I tried to point
r-reticulateto the local Python version installed here"C:/Users/Hadarma/AppData/Local/Programs/Python/Python310"and then created avenvis this the preferred method?From what I am seeing based on your comments you should be able to use
kerasand ortensorflowjust with avenvwhichr-reticulatecan create if it's not already created.Is this correct?
Thanks!- removedawaiting responseWaiting for issue author to respondWaiting for issue author to respond
on Mar 14, 2024 Hi @t-kalinowski,
Me again. I am still trying to install
tensorflowon various computers for my team and I am not always successful.Today just to see if my venv was working properly I downloaded version 3.8 Python and saved that path of the executable to feed into `reticulate::virtualenv_create("r-reticulate", python = path_to_python).
This line
install_tensorflow(envname="r-reticulate"), doesn't give me an error but when I try to check the installation I receive a python error that the module isn't found so I tried some simpler packages like thispy_install("pandas")and thenpandas <- import("pandas") which works perfectly.I am thinking maybe this has to do with the
tensorflowinstallation from github?remotes::install_github("rstudio/tensorflow")is this possible?See terrible picture of screen, the error is basically "unhashable type list". I have been working on these installations for weeks and on 2 computers it works fine and all of the rest is doesn't. Right now I am using a formatted computer and started completely fresh.
Thanks!
Hi @rbenel, I'm happy to help, but I need more info to properly diagnose what's going wrong. Can you please fill out the "installation issue" template: https://github.com/rstudio/tensorflow/blob/main/.github/ISSUE_TEMPLATE/installation-issue.md
Reacted by rbenelreticulate::py_config() python: C:/Users/moshek/Documents/.virtualenvs/r-reticulate/Scripts/python.exe libpython: C:/Users/moshek/AppData/Local/Programs/Python/Python39/python39.dll pythonhome: C:/Users/moshek/Documents/.virtualenvs/r-reticulate version: 3.9.1rc1 (tags/v3.9.1rc1:88db374, Nov 24 2020, 19:40:11) [MSC v.1927 64 bit (AMD64)] Architecture: 64bit numpy: C:/Users/moshek/Documents/.virtualenvs/r-reticulate/Lib/site-packages/numpy numpy_version: 1.26.4 tensorflow: C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\__init__.ptensorflow::tf_config() 2024-04-17 09:27:42.757578: W external/local_tsl/tsl/lib/monitoring/collection_registry.cc:81] Trying to register 2 metrics with the same name: /tensorflow/api/ops_eager_execution. The old value will be erased in order to register a new one. Please check if you link the metric more than once, or if the name is already used by other metrics. 2024-04-17 09:27:42.758862: W external/local_tsl/tsl/lib/monitoring/collection_registry.cc:81] Trying to register 2 metrics with the same name: /tensorflow/api/enable_control_flow_v2. The old value will be erased in order to register a new one. Please check if you link the metric more than once, or if the name is already used by other metrics. 2024-04-17 09:27:42.759641: W external/local_tsl/tsl/lib/monitoring/collection_registry.cc:81] Trying to register 2 metrics with the same name: /tensorflow/api/tf_function. The old value will be erased in order to register a new one. Please check if you link the metric more than once, or if the name is already used by other metrics. 2024-04-17 09:27:42.980938: W external/local_tsl/tsl/lib/monitoring/collection_registry.cc:81] Trying to register 2 metrics with the same name: /tensorflow/api/ops_eager_execution. The old value will be erased in order to register a new one. Please check if you link the metric more than once, or if the name is already used by other metrics. 2024-04-17 09:27:42.981573: W external/local_tsl/tsl/lib/monitoring/collection_registry.cc:81] Trying to register 2 metrics with the same name: /tensorflow/api/enable_control_flow_v2. The old value will be erased in order to register a new one. Please check if you link the metric more than once, or if the name is already used by other metrics. 2024-04-17 09:27:42.982242: W external/local_tsl/tsl/lib/monitoring/collection_registry.cc:81] Trying to register 2 metrics with the same name: /tensorflow/api/tf_function. The old value will be erased in order to register a new one. Please check if you link the metric more than once, or if the name is already used by other metrics. Valid installation of TensorFlow not found. Python environments searched for 'tensorflow' package: C:\Users\moshek\Documents\.virtualenvs\r-reticulate\Scripts\python.exe Python exception encountered: Traceback (most recent call last): File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\__init__.py", line 49, in <module> from ._api.v2 import __internal__ File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\_api\v2\__internal__\__init__.py", line 10, in <module> from . import autograph File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\_api\v2\__internal__\autograph\__init__.py", line 10, in <module> from tensorflow.python.autograph.core.ag_ctx import control_status_ctx File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\python\autograph\core\ag_ctx.py", line 21, in <module> from tensorflow.python.autograph.utils import ag_logging File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\python\autograph\utils\__init__.py", line 17, in <module> from tensorflow.python.autograph.utils.context_managers import control_dependency_on_returns File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\python\autograph\utils\context_managers.py", line 19, in <module> from tensorflow.python.framework import ops File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\python\framework\ops.py", line 5906, in <module> ) -> Optional[Callable[[Any], message.Message]]: File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 262, in inner return func(*args, **kwds) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 339, in __getitem__ return self._getitem(self, parameters) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 463, in Optional return Union[arg, type(None)] File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 262, in inner return func(*args, **kwds) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 339, in __getitem__ return self._getitem(self, parameters) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 451, in Union parameters = _remove_dups_flatten(parameters) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 231, in _remove_dups_flatten return tuple(_deduplicate(params)) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 205, in _deduplicate all_params = set(params) TypeError: unhashable type: 'list' You can install TensorFlow using the install_tensorflow() function.reticulate::import("tensorflow") 2024-04-17 09:27:44.503140: W external/local_tsl/tsl/lib/monitoring/collection_registry.cc:81] Trying to register 2 metrics with the same name: /tensorflow/api/ops_eager_execution. The old value will be erased in order to register a new one. Please check if you link the metric more than once, or if the name is already used by other metrics. 2024-04-17 09:27:44.504118: W external/local_tsl/tsl/lib/monitoring/collection_registry.cc:81] Trying to register 2 metrics with the same name: /tensorflow/api/enable_control_flow_v2. The old value will be erased in order to register a new one. Please check if you link the metric more than once, or if the name is already used by other metrics. 2024-04-17 09:27:44.505163: W external/local_tsl/tsl/lib/monitoring/collection_registry.cc:81] Trying to register 2 metrics with the same name: /tensorflow/api/tf_function. The old value will be erased in order to register a new one. Please check if you link the metric more than once, or if the name is already used by other metrics. Error in py_module_import(module, convert = convert) : TypeError: unhashable type: 'list' Run `reticulate::py_last_error()` for details.reticulate::py_last_error() ── Python Exception Message ─────────────────────────────────────────────────────── Traceback (most recent call last): File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\__init__.py", line 49, in <module> from ._api.v2 import __internal__ File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\_api\v2\__internal__\__init__.py", line 10, in <module> from . import autograph File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\_api\v2\__internal__\autograph\__init__.py", line 10, in <module> from tensorflow.python.autograph.core.ag_ctx import control_status_ctx File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\python\autograph\core\ag_ctx.py", line 21, in <module> from tensorflow.python.autograph.utils import ag_logging File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\python\autograph\utils\__init__.py", line 17, in <module> from tensorflow.python.autograph.utils.context_managers import control_dependency_on_returns File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\python\autograph\utils\context_managers.py", line 19, in <module> from tensorflow.python.framework import ops File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_) File "C:\Users\moshek\DOCUME~1\VIRTUA~1\R-RETI~1\lib\site-packages\tensorflow\python\framework\ops.py", line 5906, in <module> ) -> Optional[Callable[[Any], message.Message]]: File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 262, in inner return func(*args, **kwds) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 339, in __getitem__ return self._getitem(self, parameters) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 463, in Optional return Union[arg, type(None)] File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 262, in inner return func(*args, **kwds) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 339, in __getitem__ return self._getitem(self, parameters) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 451, in Union parameters = _remove_dups_flatten(parameters) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 231, in _remove_dups_flatten return tuple(_deduplicate(params)) File "C:\Users\moshek\AppData\Local\Programs\Python\Python39\lib\typing.py", line 205, in _deduplicate all_params = set(params) TypeError: unhashable type: 'list' ── R Traceback ──────────────────────────────────────────────────────────────────── ▆ 1. └─reticulate::import("tensorflow") 2. └─reticulate:::py_module_import(module, convert = convert) See `reticulate::py_last_error()$r_trace$full_call` for more details. > sessionInfo() R version 4.3.3 (2024-02-29 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19045) Matrix products: default locale: [1] LC_COLLATE=English_United States.utf8 LC_CTYPE=English_United States.utf8 [3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C [5] LC_TIME=English_United States.utf8 time zone: Asia/Jerusalem tzcode source: internal attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] reticulate_1.36.0 tensorflow_2.16.0.9000 loaded via a namespace (and not attached): [1] base64enc_0.1-3 Matrix_1.6-5 lattice_0.22-5 magrittr_2.0.3 [5] rappdirs_0.3.3 png_0.1-8 lifecycle_1.0.4 cli_3.6.2 [9] grid_4.3.3 tfruns_1.5.2 compiler_4.3.3 rprojroot_2.0.4 [13] here_1.0.1 rstudioapi_0.16.0 tools_4.3.3 whisker_0.4.1 [17] Rcpp_1.0.12 rlang_1.1.3 jsonlite_1.8.8What is the output if you run:
# install the latest CRAN releases install.packages(c("tensorflow", "reticulate", "keras3")) # restart the R session .rs.restartR() reticulate::install_python() tensorflow::install_tensorflow()
install.packages(c("tensorflow", "reticulate", "keras3")) WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding: https://cran.rstudio.com/bin/windows/Rtools/ Installing packages into ‘C:/Users/Tapat1/AppData/Local/R/win-library/4.3’ (as ‘lib’ is unspecified) also installing the dependency ‘zeallot’ trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/zeallot_0.1.0.zip' Content type 'application/zip' length 62117 bytes (60 KB) downloaded 60 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/tensorflow_2.16.0.zip' Content type 'application/zip' length 213856 bytes (208 KB) downloaded 208 KB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/reticulate_1.36.1.zip' Content type 'application/zip' length 2183538 bytes (2.1 MB) downloaded 2.1 MB trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.3/keras3_0.2.0.zip' Content type 'application/zip' length 8682075 bytes (8.3 MB) downloaded 8.3 MB package ‘zeallot’ successfully unpacked and MD5 sums checked package ‘tensorflow’ successfully unpacked and MD5 sums checked package ‘reticulate’ successfully unpacked and MD5 sums checked package ‘keras3’ successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\Tapat1\AppData\Local\Temp\RtmpWYj7s3\downloaded_packages.rs.restartR() NULL Restarting R session...reticulate::install_python() Error in pyenv_bootstrap_windows() : Please install git and ensure it is on your PATHtensorflow::install_tensorflow() Virtual environment "r-tensorflow" removed. Using Python: C:/Users/Tapat1/AppData/Local/Programs/Python/Python310/python.exe Creating virtual environment "r-tensorflow" ... + "C:/Users/Tapat1/AppData/Local/Programs/Python/Python310/python.exe" -m venv "C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-tensorflow" Done! Installing packages: pip, wheel, setuptools + "C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-tensorflow/Scripts/python.exe" -m pip install --upgrade pip wheel setuptools Requirement already satisfied: pip in c:\users\tapat1\onedrive - sysmc\documents\.virtualenvs\r-tensorflow\lib\site-packages (21.2.3) Collecting pip Using cached pip-24.0-py3-none-any.whl (2.1 MB) Collecting wheel Using cached wheel-0.43.0-py3-none-any.whl (65 kB) Requirement already satisfied: setuptools in c:\users\tapat1\onedrive - sysmc\documents\.virtualenvs\r-tensorflow\lib\site-packages (57.4.0) Collecting setuptools Using cached setuptools-69.5.1-py3-none-any.whl (894 kB) Installing collected packages: wheel, setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 57.4.0 Uninstalling setuptools-57.4.0: Successfully uninstalled setuptools-57.4.0 Attempting uninstall: pip Found existing installation: pip 21.2.3 Uninstalling pip-21.2.3: Successfully uninstalled pip-21.2.3 Successfully installed pip-24.0 setuptools-69.5.1 wheel-0.43.0 Virtual environment 'r-tensorflow' successfully created. Using virtual environment "r-tensorflow" ... + "C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-tensorflow/Scripts/python.exe" -m pip install --upgrade --no-user "tensorflow==2.16.*" Collecting tensorflow==2.16.* Using cached tensorflow-2.16.1-cp310-cp310-win_amd64.whl.metadata (3.5 kB) Collecting tensorflow-intel==2.16.1 (from tensorflow==2.16.*) Using cached tensorflow_intel-2.16.1-cp310-cp310-win_amd64.whl.metadata (5.0 kB) Collecting absl-py>=1.0.0 (from tensorflow-intel==2.16.1->tensorflow==2.16.*) Using cached absl_py-2.1.0-py3-none-any.whl.metadata (2.3 kB) Collecting astunparse>=1.6.0 (from tensorflow-intel==2.16.1->tensorflow==2.16.*) Using cached astunparse-1.6.3-py2.py3-none-any.whl.metadata (4.4 kB) Collecting flatbuffers>=23.5.26 (from tensorflow-intel==2.16.1->tensorflow==2.16.*) Using cached flatbuffers-24.3.25-py2.py3-none-any.whl.metadata (850 bytes) Collecting gast!=0.5.0,!=0.5.1,!=0.5.2,>=0.2.1 (from tensorflow-intel==2.16.1->tensorflow==2.16.*) Using 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MarkupSafe, markdown, idna, grpcio, gast, charset-normalizer, certifi, absl-py, werkzeug, requests, optree, opt-einsum, ml-dtypes, markdown-it-py, h5py, google-pasta, astunparse, tensorboard, rich, keras, tensorflow-intel, tensorflow Successfully installed MarkupSafe-2.1.5 absl-py-2.1.0 astunparse-1.6.3 certifi-2024.2.2 charset-normalizer-3.3.2 flatbuffers-24.3.25 gast-0.5.4 google-pasta-0.2.0 grpcio-1.63.0 h5py-3.11.0 idna-3.7 keras-3.3.3 libclang-18.1.1 markdown-3.6 markdown-it-py-3.0.0 mdurl-0.1.2 ml-dtypes-0.3.2 namex-0.0.8 numpy-1.26.4 opt-einsum-3.3.0 optree-0.11.0 packaging-24.0 protobuf-4.25.3 pygments-2.18.0 requests-2.31.0 rich-13.7.1 six-1.16.0 tensorboard-2.16.2 tensorboard-data-server-0.7.2 tensorflow-2.16.1 tensorflow-intel-2.16.1 tensorflow-io-gcs-filesystem-0.31.0 termcolor-2.4.0 typing-extensions-4.11.0 urllib3-2.2.1 werkzeug-3.0.2 wrapt-1.16.0 Installation complete. Restarting R session...After weeks of trying to install
tensorflowon various windows computers I keep running into the same issues.
They mainly arise when a Python package manager such as anaconda is installed on the computer, but not only.I have narrowed it down to these some error messages that no matter which virtual environment I use or which binary
.exeof Python I download (between Python3.8-3.11) keep repeating themselves.As it is a windows computer I have seen various solutions for the SSL but they are linux solutions.
These are the most popular error messages: The Git Path, the SSL connection, and the Python exception
reticulate::install_python() Error in pyenv_bootstrap_windows() : Please install git and ensure it is on your PATHinstall_tensorflow(envname = "r-tensorflow") Using Python: C:/Users/Tapat1/anaconda3/python.exe Creating virtual environment "r-reticulate" ... + "C:/Users/Tapat1/anaconda3/python.exe" -m venv "C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-reticulate" Done! Installing packages: pip, wheel, setuptools + "C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-reticulate/Scripts/python.exe" -m pip install --upgrade pip wheel setuptools Collecting pip Downloading pip-24.0-py3-none-any.whl (2.1 MB) Collecting wheel Downloading wheel-0.43.0-py3-none-any.whl (65 kB) Collecting setuptools Downloading setuptools-69.5.1-py3-none-any.whl (894 kB) Installing collected packages: pip, wheel, setuptools Attempting uninstall: pip Found existing installation: pip 20.1.1 Uninstalling pip-20.1.1: Successfully uninstalled pip-20.1.1 Attempting uninstall: setuptools Found existing installation: setuptools 47.1.0 Uninstalling setuptools-47.1.0: Successfully uninstalled setuptools-47.1.0 Successfully installed pip-24.0 setuptools-69.5.1 wheel-0.43.0 Installing packages: numpy + "C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-reticulate/Scripts/python.exe" -m pip install --upgrade --no-user numpy Collecting numpy Downloading numpy-1.24.4-cp38-cp38-win_amd64.whl.metadata (5.6 kB) Downloading numpy-1.24.4-cp38-cp38-win_amd64.whl (14.9 MB) ---------------------------------------- 14.9/14.9 MB 10.1 MB/s eta 0:00:00 Installing collected packages: numpy Successfully installed numpy-1.24.4 Virtual environment 'r-reticulate' successfully created. Using Python: C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-reticulate/Scripts/python.exe Creating virtual environment "r-tensorflow" ... + "C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-reticulate/Scripts/python.exe" -m venv "C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-tensorflow" Done! Installing packages: pip, wheel, setuptools + "C:/Users/Tapat1/OneDrive - Sysmc/Documents/.virtualenvs/r-tensorflow/Scripts/python.exe" -m pip install --upgrade pip wheel setuptools WARNING: pip is configured with locations that require TLS/SSL, however the ssl module in Python is not available. WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/pip/ WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/pip/ WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/pip/ WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/pip/ WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/pip/ Could not fetch URL https://pypi.org/simple/pip/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='[pypi.org](http://pypi.org/)', port=443): Max retries exceeded with url: /simple/pip/ (Caused by SSLError("Can't connect to HTTPS URL because the SSL module is not available.")) - skipping Requirement already up-to-date: pip in c:\users\tapat1\onedrive - sysmc\documents\.virtualenvs\r-tensorflow\lib\site-packages (20.1.1) WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/ WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/ WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/ WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/ WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError("Can't connect to HTTPS URL because the SSL module is not available.")': /simple/wheel/ Could not fetch URL https://pypi.org/simple/wheel/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='[pypi.org](http://pypi.org/)', port=443): Max retries exceeded with url: /simple/wheel/ (Caused by SSLError("Can't connect to HTTPS URL because the SSL module is not available.")) - skipping ERROR: Could not find a version that satisfies the requirement wheel (from versions: none) ERROR: No matching distribution found for wheel WARNING: pip is configured with locations that require TLS/SSL, however the ssl module in Python is not available. Could not fetch URL https://pypi.org/simple/pip/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='[pypi.org](http://pypi.org/)', port=443): Max retries exceeded with url: /simple/pip/ (Caused by SSLError("Can't connect to HTTPS URL because the SSL module is not available.")) - skipping Error: Error installing package(s): "pip", "wheel", "setuptools"Python exception encountered: Traceback (most recent call last): File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 122, in _find_and_load_hook return _run_hook(name, _hook) File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 96, in _run_hook module = hook() File "C:\Users\moshek\AppData\Local\R\win-library\4.3\reticulate\python\rpytools\loader.py", line 120, in _hook return _find_and_load(name, import_)We really want to be able to use
tensorflowon a windows computer either using a python binary for a specific version or a virtual environment.
Thanks!Thanks. A few notes:
-
Is git installed? Would you be able to install from https://git-scm.com/downloads ? I think this will resolve most of your issues.
-
If you can't install git, can you install a non-conda Python? I.e., the official binaries from https://www.python.org/downloads/ ?
-
Generally, creating Python environments in OneDrive is a recipe for trouble. Can you change the install location to one that is outside of OneDrive? I.e., do something like:
cat("", "WORKON_HOME=~/../.virtualenvs", "", sep = "\n", file = "~/.Renviron", append = TRUE)
-
Hi!
I can try to install Git, but I have official binaries of python installed as well, like mentioned in the tutorial between versions 3.8-3.10 and this doesn't seem to help.I agree regarding the OneDrive, I have run into that issue before.
Please advise how to set up the installation using a python binary correctly.
Thanks!
Where is Git installed? Is that location on
PATH? (In R, what doesSys.which("git")return). Ifgitis not on thePATH, can you add it toPATH?Where is Python installed? What does
reticulate::virtualenv_starter(all = TRUE)find?
virtualenv_starter()should find all Pythons installed in common and default locations, but if you have a custom location then you'll need to help point reticulate at it, or pass a path to TensorFlow explicitly.To use a specific Python executable to create the "r-tensorflow" venv, you can supply a path to
python_version, like this:install_tensorflow(python_version = "/path/to/bin/python"`)
You can also set the R option
reticulate.virtualenv.starteror the env varRETICULATE_VIRTUALENV_STARTERto a path where Pythons are installed, or a:delimited list of paths.Reacted by rbenelHi Tomasz,
I successfully installed
Gitusing the default parameters and when I ran this lineSys.which("git")it returns""and not a path for wherePATHofGit.I did however use
install_tensorflow(python_version = "/path/to/bin/python")using my specific exectuatble and then the installation worked. I am not sure if this is related to the fact thereticulatecan now useGit.I have additional computers to install on so I hope this workaround will be a[appropriate for all!
Thank you so much for your time!
If
Sys.which("git")return"", thengitis not on your PATH.If I remember correctly, the git installer provides an option to place it on the PATH for you? Rerunning the installer and checking the option might be the most accessible solution. You can also place the directory where
git.exeis on PATH yourself. Here are two of the top google search results for "setting PATH windows" which at a glance look right to me:https://www.wikihow.com/Change-the-PATH-Environment-Variable-on-Windows
https://www.computerhope.com/issues/ch000549.htm


Hi,
I am able to successfully install
kerasandtensorflowusing the following linesHowever as soon as I close the
.RprojectI am unable to successfully use the packages. For example if I run this linethis is the output I will receive.
Since the above installation clearly fails, here is the info requested :)
Thanks for all the help!