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Upgrade the owlapi-wrapper JAR to 1.7.0 - #317

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jvendetti merged 4 commits into
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chore/upgrade-owlapi-wrapper
Aug 18, 2026
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Upgrade the owlapi-wrapper JAR to 1.7.0#317
jvendetti merged 4 commits into
developfrom
chore/upgrade-owlapi-wrapper

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This PR upgrades to version 1.7.0 of the owlapi_wrapper.

The main feature in the new version:

Removes the duplicate OBO relationship annotations left over now that ncbo/owlapi_wrapper#37 emits every relationship under the property's own IRI.

See owlapi_wrapper ncbo/owlapi_wrapper#39 for details.

jvendetti and others added 4 commits August 17, 2026 16:58
owlapi-wrapper 1.7.0 (ncbo/owlapi_wrapper#39) stops emitting the
duplicate http://data.bioontology.org/metadata/obo/<rel> annotations
and now emits each OBO relationship once under the property's own IRI.
Point the part_of assertion at that IRI, and add a guard asserting the
legacy predicate is gone so the duplicate cannot come back unnoticed.

treeView edges are unchanged between 1.5.1 and 1.7.0, so the roots and
hierarchy assertions in this test are unaffected.

Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com>
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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 82.02%. Comparing base (8f85ce9) to head (b5839b5).

Additional details and impacted files
@@             Coverage Diff             @@
##           develop     #317      +/-   ##
===========================================
- Coverage    82.03%   82.02%   -0.02%     
===========================================
  Files          101      101              
  Lines         6853     6853              
===========================================
- Hits          5622     5621       -1     
- Misses        1231     1232       +1     
Flag Coverage Δ
ag 81.90% <100.00%> (-0.02%) ⬇️
fs 82.00% <100.00%> (+0.02%) ⬆️
gd 81.96% <100.00%> (+0.04%) ⬆️
unittests 82.02% <100.00%> (-0.02%) ⬇️
vo 81.94% <100.00%> (+0.05%) ⬆️

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@jvendetti
jvendetti marked this pull request as ready for review August 18, 2026 21:41
@jvendetti
jvendetti merged commit 93cd8e1 into develop Aug 18, 2026
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