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Enum prepwork 1 - #66

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enum-prepwork-1
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Enum prepwork 1#66
torstees wants to merge 23 commits into
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enum-prepwork-1

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@torstees
torstees marked this pull request as ready for review August 11, 2026 21:47
Add dbt model, ftd data dictionary and enumerations artifacts and som…
@RobertJCarroll

RobertJCarroll commented Aug 12, 2026

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  • src\common_access_model\schema\enums\EnumAssayType.yaml
    - [ ] src\common_access_model\schema\enums\EnumAssertionProvenance.yaml
  • src\common_access_model\schema\enums\EnumAvailabilityStatus.yaml
    - [ ] src\common_access_model\schema\enums\EnumClinicalDataSourceType.yaml
    - [x] src\common_access_model\schema\enums\EnumConsanguinityAssertion.yaml
    Replaced with the general Present / Absent.
  • src\common_access_model\schema\enums\EnumDataUseModifier.yaml
  • src\common_access_model\schema\enums\EnumDataUsePermission.yaml
  • src\common_access_model\schema\enums\EnumEDAMDataTypes.yaml
  • src\common_access_model\schema\enums\EnumEDAMFormats.yaml
  • src\common_access_model\schema\enums\EnumEthnicity.yaml
  • src\common_access_model\schema\enums\EnumFamilyRelation.yaml
  • src\common_access_model\schema\enums\EnumFileAvailability.yaml
    Deleted for one availability.
  • src\common_access_model\schema\enums\EnumLaterality.yaml
    - [x] src\common_access_model\schema\enums\EnumNull.yaml
  • src\common_access_model\schema\enums\EnumOrganism.yaml
  • src\common_access_model\schema\enums\EnumParticipantLifespanStage.yaml
  • src\common_access_model\schema\enums\EnumPresentAbsent.yaml
  • src\common_access_model\schema\enums\EnumProgram.yaml
  • src\common_access_model\schema\enums\EnumRace.yaml
  • src\common_access_model\schema\enums\EnumResearchDomain.yaml
  • src\common_access_model\schema\enums\EnumSampleCollectionMethod.yaml
  • src\common_access_model\schema\enums\EnumSex.yaml
  • src\common_access_model\schema\enums\EnumSite.yaml
  • src\common_access_model\schema\enums\EnumSpatialQualifiers.yaml
  • src\common_access_model\schema\enums\EnumUnknown.yaml
  • src\common_access_model\schema\enums\EnumUnknownOther.yaml
  • src\common_access_model\schema\enums\EnumVitalStatus.yaml

Needs expansion:

  • src\common_access_model\schema\enums\EnumStudyDesign.yaml
  • src\common_access_model\schema\enums\EnumDataCategory.yaml

Needs CAMO:

  • src\common_access_model\schema\enums\EnumAsserterType.yaml
  • src\common_access_model\schema\enums\EnumDataSourceType.yaml
  • src\common_access_model\schema\enums\EnumFamilyType.yaml
  • src\common_access_model\schema\enums\EnumSubjectType.yaml
  • src\common_access_model\schema\enums\EnumFileHashType.yaml

Final reviews

  • Check for Unknown / other options.
  • Check for uriorcurie options
  • Ensure concept table is linked.

RobertJCarroll and others added 8 commits August 12, 2026 17:22
Reviews and edits a few enums, including a refactor splitting up "data source" and "asserter" parts of assertions.
A few more revisions.
Sample Collection, Site, study design, vital status
* Expanding EnumAssayType and EnumPresentAbsent

* Adding CHMO prefix

* Ensure parent node displays accurate information

* Modify title and description to match search-dragon results

Updated the title and description for OBI:0000070 to 'assay'.
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3 participants