Integration dev - #10

Merged

adamfreedman merged 8 commits into

mainfrom

integration_dev

Jul 16, 2026

Commits on Jun 30, 2026

Integrate downsampling workflow modes
adamfreedman
committed
a03e43a

Commits on Jul 3, 2026

rename bootstrap_clusters to downsample_clusters and scatter per replicate
adamfreedman
committed
6f8c0c4
lower downsample_cluster_replicate base runtime from 240 to 30 minutes
adamfreedman
committed
cd0573c

Commits on Jul 13, 2026

Fix SCTransform hang and consolidate downsampling replicates into one job per target

adamfreedman
and
claude
committed
519fb72
Explicitly delete per-cluster marker CSVs in combine_markers

adamfreedman
and
claude
committed
441d1eb

Commits on Jul 14, 2026

Commits on Jul 15, 2026

Bump GitHub Actions to Node.js 24 runtime versions

adamfreedman
and
claude
committed
1ac5e18