Graph Component Segmentation

Read in ODGI Bin output and identify co-linear components

Developer Instructions

Environment: Anaconda 3.7
Ggfapy etc. does not have an anaconda package, so it's necessary to use pip:
pip install -r requirements.txt

IDE: Pycharm Professional 2019.1

• Travis CI - automatically runs tests on master and development branches

Example Run Configuration

Parameters: --json-file=data/run1.B1phi1.i1.seqwish.w100.json --out-folder=data/ --cells-per-file=5000