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  1. Introduction_to_Python_for_WWS Introduction_to_Python_for_WWS Public

    Jupyter Notebook 1

  2. gelidonyamr gelidonyamr Public

    This Nextflow pipeline, gelidonyAMR, has been developed for analyzing Salmonella Infantis genomes, including genome assembly, antimicrobial resistance (AMR) profiling, MLST and cgMLST typing. It is…

    Nextflow 2

  3. GenomePlatform GenomePlatform Public

    Automated bacterial genomic analysis · AI-assisted clinical interpretation · PCR primer design (research use only)

    Python 1

  4. phage_analysis phage_analysis Public

    Bacteriophage discovery & characterization pipeline (Nextflow DSL2) — FastQC, Kraken2, SPAdes, VirSorter2, CheckV, BACPHLIP, Phrokka, Prokka, vContact2, vHULK, BLAST

    Nextflow 2

  5. pha4ge/pipeline-resources pha4ge/pipeline-resources Public

    Bioinformatics Pipeline and Visualization resources

    65 36