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bivariate Poisson family #50

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3602b02
Merge pull request #36 from boost-R/devel
hofnerb Apr 26, 2017
c88eaa0
revert unwanted changes in README
hofnerb Apr 26, 2017
9e42384
Updated DESCIPTION
hofnerb Apr 26, 2017
87dc35a
Updated references and really refer to Thomas et al in the manuals
hofnerb Apr 26, 2017
6ab3cc0
cosmetics
hofnerb Apr 26, 2017
abf7652
risk(, merge = TRUE) did not correct for new offset risk. Fixes #37
hofnerb Apr 26, 2017
e29d8d1
Updated readme
hofnerb Apr 26, 2017
8ef6fb1
package now requires mboost >= 2.8-0
hofnerb Apr 26, 2017
c2db923
cosmetics
hofnerb Apr 26, 2017
814c60d
Updated NEWS.Rd
hofnerb Apr 26, 2017
a16eb63
adapt mboostLSS_fit() such that it works with FDboost to get FDboostLSS
Apr 27, 2017
cac3809
give more details in manual
Apr 28, 2017
9c8cc8a
give more details in manual
Apr 28, 2017
1f66eba
Fixes typo
hofnerb Apr 28, 2017
3084a39
make sure the repository is set
hofnerb Apr 28, 2017
90cede6
Add reverse dependency checks
hofnerb Apr 28, 2017
ccb833f
Update Readme
hofnerb Apr 28, 2017
d7a21ad
Started fixing stabsel (see <FIXME> for open issues)
hofnerb Apr 28, 2017
f78a0aa
More tests
hofnerb Apr 28, 2017
b66755c
Updated tests
hofnerb Apr 28, 2017
bc826ea
solve conflict in manual
May 2, 2017
1e606c7
fix selected and adapt tests
ja-thomas May 2, 2017
6243369
argument timeformula into dots, check_timeformula into helpers
May 2, 2017
fe83199
new argument allow_matrix = FALSE in check_y_family() to allow for ma…
May 2, 2017
57117da
Merge pull request #41 from boost-R/fix_selected
hofnerb May 2, 2017
cf6ae9c
fix summary. closes #43.
hofnerb May 2, 2017
88449e3
check results of stabsel
hofnerb May 2, 2017
e04a6c4
fix computation of offset
May 2, 2017
d1dbb32
Merge remote-tracking branch 'upstream/master'
May 2, 2017
fa8bcd3
fix stabsel plot
ja-thomas May 3, 2017
71ad6e9
add additional test
ja-thomas May 3, 2017
ecc63ed
Update regtest-noncyclic_fitting.R
ja-thomas May 3, 2017
36aee6e
Update mboostLSS.R
ja-thomas May 3, 2017
95c79f2
use fitted.mboost() as fitted.FDboost() returns matrix
May 3, 2017
658599c
Merge pull request #44 from boost-R/fix_stabsel_plot
hofnerb May 3, 2017
2599aed
Updated SOPs for CRAN upload regarding vignette
hofnerb May 3, 2017
ef96def
report in NEWS that mboostLSS_fit() is adapted for FDboostLSS()
May 4, 2017
8333592
Merge remote-tracking branch 'upstream/master'
May 4, 2017
2de0e6c
Merge pull request #38 from sbrockhaus/master
hofnerb May 5, 2017
b259544
Updated reference to Thomas et al (2017). Closes #45
hofnerb May 5, 2017
8c0d475
Updated maintainer's email address
hofnerb May 5, 2017
8b70010
Also update inst/CITATION
hofnerb May 5, 2017
54dbcd9
Updated check results
hofnerb May 5, 2017
d903d34
Updated release SOPs to reflect new repository structure
hofnerb May 5, 2017
95b48b9
Release gamboostLSS 2.0-0
hofnerb May 5, 2017
8750ae0
export various plot functions and cvrisk (see #46)
hofnerb May 17, 2017
7f0b37c
streamlined interfaces of cvrisk
hofnerb May 17, 2017
c962e3b
updated cvrisk manual (closes #46)
hofnerb May 17, 2017
3449299
Updated further manuals regarding various classes of results
hofnerb May 17, 2017
70a30c4
Update DESCRIPTION
hofnerb May 17, 2017
6d385df
Update reference for non-cyclic boosting (closes #47)
hofnerb May 17, 2017
780e8ab
README
hofnerb May 17, 2017
13e9b2d
fix citation
hofnerb May 17, 2017
09af4f0
export predict.mboostLSS
hofnerb Dec 1, 2017
6af980e
Merge branch 'master' of https://github.com/boost-R/gamboostLSS
hofnerb Dec 1, 2017
00145b6
fix merge conflict
hofnerb Dec 4, 2017
a462d46
Updated Thomas et al to final reference. Closes #47 once more.
hofnerb Jun 14, 2018
1cb93d2
Update .Rout.save
hofnerb Jun 14, 2018
120fef6
Release gamboostLSS 2.0-1
hofnerb Jun 14, 2018
ac3af5c
Duplicated vignette with some modifications to reduce package size; u…
Jun 22, 2018
b871cbf
Initialize combined_risk in mboostLSS_fit to avoid writing (and overw…
hofnerb Jun 22, 2018
f97c890
Avoid building the vignette twice
hofnerb Jun 22, 2018
4989474
Fix stabsel.mboostLSS for models fitted with FDboostLSS. Closes #51
Mar 17, 2019
ad864dd
Bugfix. Closes #55
mayrandy Apr 5, 2019
bbe656b
Fixing Family problem, closes #53
mayrandy Apr 5, 2019
db087e7
Updated hyperlink to https
hofnerb Jan 19, 2021
dcd6462
Fixed CRAN checks
hofnerb Jan 19, 2021
14dddb7
Replaced DOI references with \doi
hofnerb Jan 19, 2021
3a70423
Release gamboostLSS 2.0-2
hofnerb Jan 19, 2021
dff2d2c
Release gamboostLSS 2.0-3
hofnerb Jan 20, 2021
753f22d
Relase gamboostLSS 2.0-4
hofnerb Jan 20, 2021
7792951
Release gamboostLSS 2.0-5
hofnerb Jan 20, 2021
7c75689
fix issue of oobag risk in non-cyclical fitting
mayrandy Jul 16, 2021
a898c97
Update mboostLSS.R
mayrandy Jul 16, 2021
d3225c4
Try again...
mayrandy Jul 23, 2021
6cf9cb8
Update cvrisk.R
hofnerb May 3, 2022
276770e
Update cvrisk.nc_mboostLSS.R
hofnerb May 3, 2022
4084658
Release gamboostLSS 2.0-6
hofnerb May 5, 2022
1dc1ee7
Release version 2.0-7
hofnerb Mar 9, 2023
b085c81
extend warning for censored families
mayrandy May 12, 2023
28d9008
fix typo in Error message
mayrandy Oct 6, 2023
c1a6350
fix error message
mayrandy Oct 17, 2023
6d67d4f
fixed minor issue in stabsel manual
hofnerb Jan 6, 2025
8b409f8
implement Dirichlet family
micbalz Dec 25, 2024
c742077
delete
micbalz Dec 25, 2024
e556174
fix typos
micbalz Dec 25, 2024
7be3337
run R checks, update documentation, remove notes
micbalz Jan 19, 2025
6c84ccf
adjust families, add comments, add tests
micbalz Feb 11, 2025
440eb02
fix notes in checks
micbalz Feb 11, 2025
0763004
fix errors
micbalz Feb 11, 2025
252b898
Remove testthat from suggests as it is not needed.
hofnerb Feb 14, 2025
9021dc3
Release version 2.1-0
hofnerb Feb 24, 2025
d9bf4db
clean code file by removing unecessary lines
hofnerb Jan 26, 2026
2486fe8
Cleaned manuals
hofnerb Jan 26, 2026
1c45070
Updated tests by making code conditional on availability of suggested…
hofnerb Jan 26, 2026
2aadbd4
Added \VignetteDepends to the vignette and removed hidden installatio…
hofnerb Jan 26, 2026
0657da9
fixed URLs as required by CRAN check
hofnerb Jan 26, 2026
4f34327
make package dependent on gamlss.dist
hofnerb Jan 26, 2026
6b75ac9
Release package 2.2-0
hofnerb Jan 26, 2026
5cd36f3
feat(copula_families): add get_marginal_type and get_marginal_case
May 29, 2026
b5b168b
test: add tests for get_marginal_type and get_marginal_case
May 29, 2026
0dea72c
chore: add *.Rproj to .gitignore
May 29, 2026
b2e6e7a
feat(copula_families): add get_marginal_cdf, get_marginal_logpdf help…
Jun 1, 2026
289614e
feat(copula): add gaussian copula kernel and get_copula helper
Jun 2, 2026
36c765a
test(copula): add test for continuous_continuous_loglik for special c…
Jun 2, 2026
a2dbb8a
fix(copula): correct analytical gradient formula for dlogc/dtheta for…
Jun 3, 2026
4c7ac87
test: add tests to check analytical gradients for Gaussian copula aga…
Jun 3, 2026
ca11001
feat(copula_families): add discrete distributions to get_marginal_cdf…
Jun 4, 2026
e53929a
fix(copula_families): correct cdf and logpdf for gamma and negative b…
Jun 5, 2026
d945ce6
feat(copula_families): add first logic of CopulaFamilies() constructo…
Jun 8, 2026
3a8a67f
feat(copula_families): add offset for marginal subfamilies, ngradient…
Jun 9, 2026
a6cecec
chore: add mvtnorm to imports in DESCRIPTION
Jun 10, 2026
cd9e8f4
feat(copula): add pcopula to .copula_gaussian
Jun 10, 2026
63320aa
feat(copula_families): add discrete_discrete_loglik
Jun 10, 2026
aabdab6
test(copula): add test for discrete_discrete_loglik
Jun 10, 2026
f88b750
test(copula): add joint loglik gradient test for bivariate continuous…
Jun 11, 2026
ad7a7fe
feat(copula): add conditional cdf, response and name to gaussian copula
Jun 16, 2026
c827dc8
feat(copula_families): add binary marginal cdf and binary-continuous/…
Jun 16, 2026
9611d00
test(copula): add gradient test for h-function against numerical deri…
Jun 16, 2026
d157b9a
feat(families): add BernoulliLSS
Jun 16, 2026
0f1257a
fix(familiies): fix BernoulliLSS constructor args
Jun 17, 2026
374ee16
feat(copula_families): add Bernoulli cdf and type detection
Jun 17, 2026
0ed7863
test(copula): add binary_continuous independence and reference value …
Jun 17, 2026
d2362ce
chore: add .DS_Store to gitignore
Jun 17, 2026
aff67f3
test(copula): add parameter construction test of CopulaFamilies for a…
Jun 18, 2026
7a61afe
feat(copula): add copula specifications for clayton copula
Jun 22, 2026
f1f563f
test(copula): add tests for consistency of clayton copula
Jun 22, 2026
acc57c2
feat(copula): add Gumbel copula specifications
Jun 23, 2026
d9f790d
test(copula): add tests for consistency for gumbel copula and mixed d…
Jun 23, 2026
707a152
feat(copula): add Frank copula specifications
Jun 24, 2026
f40833e
test(copula): add tests for consistency for Frank copula
Jun 24, 2026
4a4040f
test(copula): add integration test for copula families in CopulaFamil…
Jun 25, 2026
6c0e897
feat(copula): add inner derivative for gaussian copula link
Jun 29, 2026
8a29244
fix(copula_families): change placeholder for copula response in Copul…
Jun 29, 2026
6e42106
chore: add numDeriv to Imports in DESCRIPTION
Jun 29, 2026
5c85600
test(copula): validate ngradient_theta against numDeriv for gaussian …
Jun 29, 2026
3e626e1
feat(copula): add dlogdcopula_theta and dresponse for clayton copula
Jun 30, 2026
2db5a61
test(copula): validate ngradient_theta against numDeriv for clayton c…
Jun 30, 2026
a885513
feat(copula): add dlogdcopula_u1 for clayton copula
Jul 1, 2026
5b4561e
feat(copula_families): add get_marginal_dcdf helper
Jul 1, 2026
1372f04
test(copula): validate get_marginal_dcdf against numerical derivative…
Jul 1, 2026
ccc86ba
feat(copula_families): implement ngradient for marginal subfamilies c…
Jul 2, 2026
1d8e6b0
test(copula): test marginal param gradients against numDeriv
Jul 2, 2026
24543c9
feat(copula_families): use current_theta in loss_p and initialize off…
Jul 3, 2026
8e777a2
test(copula): add test for all ngradient initializations
Jul 3, 2026
c18d194
feat(copula): add dlogdcopula_u1, dlogdcopula_theta and dresponse for…
Jul 6, 2026
154eee5
fix(copula_families): compute marginal ngradient via finite differenc…
Jul 6, 2026
afb19d0
test(copula): add gradient checks for Gumbel and fix ngradient valida…
Jul 6, 2026
86f0960
feat(copula): add dlogdcopula_u1, dlogdcopula_theta and dresponse for…
Jul 7, 2026
07ef158
test(copula): add pointwise gradient checks for Frank copula
Jul 7, 2026
4c28d08
test(copula): add ngradient_theta check for Frank copula
Jul 8, 2026
4375d81
fix(copula_families): add helper inside CopulaFamilies that syncs clo…
Jul 9, 2026
8fea359
feat(copula): add individual theta offset
Jul 13, 2026
c52bb38
feat(copula_families): use individual copula theta offset for offset_…
Jul 13, 2026
441fb09
test(copula): add theta offset checks, negative-theta point check for…
Jul 13, 2026
6c77bba
fix(copula_families): swap PIT argmuments in marginal2 ngradient and …
Jul 14, 2026
16502c5
test(copula): add numDeriv test for second marginal ngradients
Jul 14, 2026
a220f05
feat(copula): add slots for Kendall's tau conversion
Jul 16, 2026
8d9266a
test(copula): add tests for Kendall's tau conversion
Jul 16, 2026
382db8f
feat(copula_families): initialise theta from Kendalls tau in offset_t…
Jul 17, 2026
2fc8929
test(copula): adapt theta_offset test to Kendalls tau conversion and …
Jul 17, 2026
177721a
test(copula): cvrisk test with equal mstop grid
Jul 20, 2026
0fd58c3
refactor(copula_families): vectorized dresponse finite differences in…
Jul 21, 2026
024bee4
test(copula): add checks for vectorized dresponse
Jul 21, 2026
25f9cac
fix(copula_families): fix get_marginal_dcdf bug for non-Gaussian marg…
Jul 22, 2026
7cab1de
test(copula): add param vector and end-to-end check for get_marginal_…
Jul 22, 2026
0898004
test(copula): refactor test for selection and application of cvrisk m…
Jul 23, 2026
5ff9557
fix(tests/regtest-copula): correct unexported BernoulliLSS() calls wi…
Jul 27, 2026
b9a5aec
feat(cvrisk): add make_mstop_grid helper to make multi-parameter fit …
Jul 27, 2026
3100e15
chore(package): add missing importFrom("stats,...) entries to NAMESPACE
Jul 27, 2026
1290c00
chore(package): move numDeriv to Suggests
Jul 27, 2026
19cddfa
fix(copula_families): make the marginal family names in summary() out…
Jul 27, 2026
d3015bb
test(copula): check mboostLSS methods on a CopulaFamilies fit
Jul 27, 2026
6b04863
fix(copula): vectorize Gaussian pcopula theta argument
Jul 28, 2026
82a5e7b
fix(copula_families): add missing Bernoulli cases to get_marginal_logpdf
Jul 28, 2026
2bb1d40
test(copula): add gradient and method checks for all marginal cases
Jul 28, 2026
62a6121
refactor(cvrisk): rename make_mstop_grid to make_copula_grid
Jul 29, 2026
b77a540
feat(package): export CopulaFamilies, BernoulliLSS and make_copula_grid
Jul 29, 2026
b4a9947
docs(copula): add man page for CopulaFamilies
Jul 29, 2026
26f6cb5
docs(families, cvrisk): document BernoulliLSS and make_copula_grid
Jul 29, 2026
8d74140
test(copula): check exported API and use new helper (make_copula_grid…
Jul 29, 2026
32f1efc
feat(copula_families): add copula_tau() to convert fitted theta to Ke…
Jul 30, 2026
974db31
feat(package): export copula_tau
Jul 30, 2026
02a477c
docs(copula): document copula_tau in CopulaFamilies.Rd
Jul 30, 2026
a6059e7
test(copula): check copula_tau across copulas, newdata and error path
Jul 30, 2026
e85eb08
feat(copula): clamp Gaussian and Frank link functions away from their…
Aug 3, 2026
8c70d03
fix(copula_families): clamp PIT values inside (0,1)
Aug 3, 2026
e27b51b
test(copula): check link and PIT domains and the fit under strong dep…
Aug 3, 2026
6b6a000
fix(copula_families): perturb the predictior instead of the parameter…
Aug 4, 2026
f4b6f29
test(copula): check if ngradient stays finite for a near-zero sigma v…
Aug 4, 2026
951a322
chore: ignore Rplots.pdf and .RDataTmp
Aug 6, 2026
be0272a
docs(vignettes): add copula regression vignette and enable knitr for …
Aug 6, 2026
d12b9b1
docs(copula): add references and fix usage block in CopulaFamilies.Rd
Aug 13, 2026
8a79f53
test(copula): add variable selection check
Aug 19, 2026
7f2d671
Merge pull request #65 from boost-R/feature/copula
AnnikaStr Aug 24, 2026
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4 changes: 4 additions & 0 deletions .Rbuildignore
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^.*\.yml$
SOP_release.txt
buildCRAN
checks.R
copy_Rout_to_Routsave.R
tests/Rplots.pdf
vignettes/gamboostLSS_Tutorial.tex
vignettes/auto
vignettes/graphics
vignettes/fig-crossvalidation.pdf
vignettes/gamboostLSS_Tutorial_CRAN.Rnw
4 changes: 4 additions & 0 deletions .RbuildignoreCRAN
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^.*\.yml$
SOP_release.txt
buildCRAN
checks.R
copy_Rout_to_Routsave.R
tests/.*\.Rout\.save$
tests/Examples
tests/Rplots.pdf
vignettes/gamboostLSS_Tutorial.tex
vignettes/auto
vignettes/graphics
vignettes/.*\.Rout\.save$
vignettes/cvrisk
8 changes: 8 additions & 0 deletions .gitignore
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.Rproj.user
.Rhistory
.RData
.Ruserdata
*.Rproj
.DS_Store
Rplots.pdf
.RDataTmp
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