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@abyzovlab

Abyzov lab

Software packages developed in Abyzov's lab

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  1. CNVnator CNVnator Public

    a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

    C++ 236 66

  2. CNVpytor CNVpytor Public

    a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

    Python 217 29

  3. vcf2diploid vcf2diploid Public

    personal genome constructor

    Java 11 11

  4. AGE AGE Public

    a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs)

    C++ 9 7

  5. All2 All2 Public

    A tool for filtering variants from all2all comparison of multiple clones or single cells

    Python 5 2

  6. Leucippus Leucippus Public

    A tool for confirmation of mosaic variants from targeted sequencing

    Java 3 1

Repositories

Showing 10 of 12 repositories
  • VIROnator Public

    A tool for sensitive detection of viral presence in human samples sequenced by WGS

    abyzovlab/VIROnator's past year of commit activity
    Python 1 0 0 0 Updated Oct 3, 2026
  • Web-page Public

    Web content of the page describing the lab

    abyzovlab/Web-page's past year of commit activity
    HTML 0 0 0 0 Updated Sep 28, 2026
  • CNVpytor Public

    a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

    abyzovlab/CNVpytor's past year of commit activity
    Python 217 MIT 29 67 0 Updated Jun 23, 2026
  • CNVpytor-course Public
    abyzovlab/CNVpytor-course's past year of commit activity
    CSS 0 CC-BY-4.0 0 4 2 Updated Jun 6, 2025
  • vcf2diploid Public

    personal genome constructor

    abyzovlab/vcf2diploid's past year of commit activity
    Java 11 11 5 0 Updated May 29, 2025
  • All2 Public

    A tool for filtering variants from all2all comparison of multiple clones or single cells

    abyzovlab/All2's past year of commit activity
    Python 5 MIT 2 0 0 Updated Apr 21, 2022
  • CNVnator Public

    a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

    abyzovlab/CNVnator's past year of commit activity
    C++ 236 66 38 0 Updated Feb 17, 2022
  • CNVpytorVCF Public

    CNVpytor plugin for JBrowse

    abyzovlab/CNVpytorVCF's past year of commit activity
    JavaScript 0 MIT 1 0 0 Updated Feb 9, 2021
  • SCellector Public

    Tool to conduct QC of single cell amplification

    abyzovlab/SCellector's past year of commit activity
    Python 2 3 0 0 Updated Aug 2, 2020
  • Belka Public

    a software that implements RigidFinder, a method to detect protein rigid blocks from two different conformations.

    abyzovlab/Belka's past year of commit activity
    Java 0 0 0 0 Updated Apr 20, 2020
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