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SMD Bioinformatics Lund

Bioinformatic team at Section for Molecular Diagnostics, Laboratory Services, Region Skåne, Lund

17 followers
Sweden

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gens gens Public

TypeScript 21 10
nextflow_wgs nextflow_wgs Public

Nextflow 10 6
nextflow_microwgs nextflow_microwgs Public

Perl 2 1
nextflow_tumwgs nextflow_tumwgs Public

Perl 2 2
SomaticPanelPipeline SomaticPanelPipeline Public

Nextflow 1 1

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Showing 10 of 75 repositories

jasentool Public
Helper tool for all of jasen's needs

SMD-Bioinformatics-Lund/jasentool's past year of commit activity

Python 0 GPL-3.0 0 5 0 Updated Oct 2, 2026
nallo Public Forked from genomic-medicine-sweden/nallo
An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.

SMD-Bioinformatics-Lund/nallo's past year of commit activity

Nextflow 0 MIT 25 0 0 Updated Oct 2, 2026
coyote_cli Public
command line interface for coyote

SMD-Bioinformatics-Lund/coyote_cli's past year of commit activity

Python 0 1 4 1 Updated Oct 2, 2026
nextflow_wgs Public

SMD-Bioinformatics-Lund/nextflow_wgs's past year of commit activity

Nextflow 10 6 125 (2 issues need help) 3 Updated Oct 2, 2026
coyote3 Public
Coyote3 is a secure, scalable, and extensible web application designed as a one-stop solution for genomic variant interpretation, data management, and clinical reporting. Built by the @SMD-Bioinformatics-Lund, Lund,

SMD-Bioinformatics-Lund/coyote3's past year of commit activity

Python 0 3 55 (2 issues need help) 1 Updated Oct 1, 2026
eyrie Public
Visualisation software for trana output

SMD-Bioinformatics-Lund/eyrie's past year of commit activity

HTML 4 MIT 1 4 1 Updated Sep 30, 2026
bonsai Public
Visualize and analyze resistance and outbreak of bacterial pathogen

SMD-Bioinformatics-Lund/bonsai's past year of commit activity

Python 8 GPL-3.0 5 50 5 Updated Sep 29, 2026
gens Public

SMD-Bioinformatics-Lund/gens's past year of commit activity

TypeScript 21 MPL-2.0 10 68 1 Updated Sep 28, 2026
bonsai-sdk Public
bonsai-libs is the shared Python library for the Bonsai platform. It provides common building blocks used by Bonsai services and tools.

SMD-Bioinformatics-Lund/bonsai-sdk's past year of commit activity

Python 1 GPL-3.0 0 0 1 Updated Sep 27, 2026
bonsai-prp Public
Pipeline output Processing Program for Bonsai

SMD-Bioinformatics-Lund/bonsai-prp's past year of commit activity

Python 0 GPL-3.0 2 7 1 Updated Sep 27, 2026

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