fix/ipf for low quality data - #214

Merged

singjc merged 7 commits into

PyProphet:masterfrom

singjc:split/ipf-experimental

Jun 18, 2026

Commits on Jun 17, 2026

feat: add experimental IPF grouped FDR and filtering
singjc
committed
911143b

Commits on Jun 18, 2026

refactor: simplify grouped FDR strategy by removing phospho-loss option and related checks
singjc
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052c588
refactor: remove unused pre-BM hypothesis filter tests and related functions
singjc
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9bddfa2
fix: update .gitignore to include tools directory and restore generated API docs
singjc
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dcd2554
Merge branch 'master' into split/ipf-experimental
singjc
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d8a8507
refactor: enhance get_feature_mapping_across_runs function and improve IPF q-value computation with strategy parameter
singjc
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663ffd8
Merge branch 'split/ipf-experimental' of github.com:singjc/pyprophet into split/ipf-experimental
singjc
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4a91751