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Probabilistic Models in Biology

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  1. scLVM scLVM Public

    scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources, thereby allowing for the correction of confounding sources…

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  2. peer peer Public

    Forked from mz2/peer

    A factor analysis package

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  3. deeprvat deeprvat Public

    Python 51 10

  4. limix-backup limix-backup Public

    C++ 45 11

  5. pygp pygp Public

    A Gaussian process toolbox in python

    Python 42 9

  6. bicycle bicycle Public

    Bicycle: Intervention-Based Causal Discovery with Cycles

    Jupyter Notebook 39 7

Repositories

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  • Health-Privacy-Challenge Public

    Code and documentation for the CAMDA Health Privacy Challenge and reproduction of the accompanying paper.

    PMBio/Health-Privacy-Challenge's past year of commit activity
    Python 9 BSD-3-Clause 8 0 1 Updated Sep 30, 2026
  • cellina-reproducibility Public

    Repository to reproduce results for cellina

    PMBio/cellina-reproducibility's past year of commit activity
    Jupyter Notebook 0 0 0 2 Updated Sep 30, 2026
  • cellina Public
    PMBio/cellina's past year of commit activity
    Python 7 BSD-3-Clause 0 0 3 Updated Sep 30, 2026
  • LIVI Public

    LIVI is an interpretable deep learning framework that enables trans-eQTL mapping at single-cell resolution.

    PMBio/LIVI's past year of commit activity
    Python 12 BSD-3-Clause 1 0 0 Updated Sep 13, 2026
  • scptseq Public

    A toolkit for processing and analyzing scPT-seq data.

    PMBio/scptseq's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 9, 2026
  • interp-extrap-perturb Public

    https://interp-extrap-perturb.readthedocs.io

    PMBio/interp-extrap-perturb's past year of commit activity
    Jinja 9 MIT 2 0 0 Updated Sep 7, 2026
  • GBM_analysis Public

    Notebooks and scripts used to analyse GBM multi-ome atlas

    PMBio/GBM_analysis's past year of commit activity
    Jupyter Notebook 3 MIT 2 0 0 Updated Aug 14, 2026
  • segger Public Forked from dpeerlab/segger

    GNN-based cell segmentation of spatial transcriptomics data

    PMBio/segger's past year of commit activity
    Python 1 11 0 0 Updated Jul 5, 2026
  • spaceTree Public
    PMBio/spaceTree's past year of commit activity
    Jupyter Notebook 8 MIT 1 1 0 Updated Jun 3, 2026
  • deeprvat Public
    PMBio/deeprvat's past year of commit activity
    Python 51 10 3 2 Updated May 8, 2026
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