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17 changes: 16 additions & 1 deletion .github/workflows/R-CMD-check.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -40,11 +40,15 @@ jobs:
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
# Use CRAN's macOS binaries with CRAN R's bundled OpenMP runtime.
# Keep Posit Package Manager enabled on Linux and Windows.
use-public-rspm: ${{ runner.os != 'macOS' }}

- uses: r-lib/actions/setup-r-dependencies@v2
if: matrix.config.r == 'release'
with:
# Do not restore macOS binaries from the previous repository setup.
cache-version: ${{ runner.os == 'macOS' && '2' || '1' }}
extra-packages: any::rcmdcheck
needs: check

Expand All @@ -54,6 +58,17 @@ jobs:
extra-packages: any::rcmdcheck, cran/ggrepel@0.9.6
needs: check

- name: Verify macOS dependencies load
if: runner.os == 'macOS'
shell: Rscript {0}
run: |
print(R.version)
print(getOption("repos"))
library(Rtsne)
library(dotCall64)
library(SeuratObject)
library(Seurat)

- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
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2 changes: 1 addition & 1 deletion DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ Version: 0.5.1
Description: CyteTypeR is the R version of CyteType python package.
Authors@R:
person("Nygen Analytics AB", , ,"contact@nygen.io", role = c("aut", "cre"))
License: MIT + file LICENSE
License: file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends:
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