Skip to content
@NationalGenomicsInfrastructure

National Genomics Infrastructure

The Swedish National Genomics Infrastructure (NGI), a technology platform at SciLifeLab, serving primarily Swedish academia.

Pinned Loading

  1. miarka-provision miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    Jinja 1 16

  2. genomics-status genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    JavaScript 12 22

  3. ngi_reports ngi_reports Public

    Code to generate reports for use by the NGI in SciLifeLab

    Python 5 14

  4. MultiQC_NGI MultiQC_NGI Public

    MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

    Python 4 11

  5. taca-ngi-pipeline taca-ngi-pipeline Public

    Forked from b97pla/taca-ngi-pipeline

    A TACA plugin adding functionality relevant for the ngi_pipeline

    Python 3 13

  6. TACA TACA Public

    Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    Python 14 17

Repositories

Showing 10 of 58 repositories
  • miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    NationalGenomicsInfrastructure/miarka-provision's past year of commit activity
    Jinja 1 16 10 1 Updated Sep 21, 2026
  • ngisweden.se-publications Public

    A GitHub action to fetch a random selection of publications to display on the website

    NationalGenomicsInfrastructure/ngisweden.se-publications's past year of commit activity
    HTML 0 MIT 0 0 8 Updated Sep 21, 2026
  • flowcell_parser Public

    Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

    NationalGenomicsInfrastructure/flowcell_parser's past year of commit activity
    Python 7 MIT 18 1 0 Updated Sep 18, 2026
  • BioMate Public Forked from fagostini/BioMate

    A collection of scripts and utility tools for everyday processing of biological data

    NationalGenomicsInfrastructure/BioMate's past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 18, 2026
  • TACA Public Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    NationalGenomicsInfrastructure/TACA's past year of commit activity
    Python 14 MIT 20 3 1 Updated Sep 17, 2026
  • scilifelab_epps Public Forked from Galithil/scilifelab_epps

    A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

    NationalGenomicsInfrastructure/scilifelab_epps's past year of commit activity
    Python 6 16 0 1 Updated Sep 17, 2026
  • genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    NationalGenomicsInfrastructure/genomics-status's past year of commit activity
    JavaScript 12 MIT 22 0 4 Updated Sep 16, 2026
  • ngi_pipeline Public Forked from mariogiov/ngi_pipeline

    Code driving the production pipeline at SciLifeLab

    NationalGenomicsInfrastructure/ngi_pipeline's past year of commit activity
    Python 7 26 22 0 Updated Sep 16, 2026
  • NGI_scWGS_technote_2025 Public Forked from pontushojer/NGI_scWGS_technote_2025

    Filtes related benchmarking scWGS kits at NGI Stockholm 2025

    NationalGenomicsInfrastructure/NGI_scWGS_technote_2025's past year of commit activity
    HTML 0 1 0 0 Updated Sep 14, 2026
  • taca-ngi-pipeline Public Forked from b97pla/taca-ngi-pipeline

    A TACA plugin adding functionality relevant for the ngi_pipeline

    NationalGenomicsInfrastructure/taca-ngi-pipeline's past year of commit activity
    Python 3 MIT 14 0 0 Updated Sep 2, 2026
View all repositories

Most used topics

Loading…