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@NL-BioImaging

NL-BioImaging AM

NL-BioImaging AM is a distributed research infrastructure aimed at promoting progress in the most cutting edge microscopy technologies and providing open access

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  1. biomero biomero Public

    BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

    Python 29 6

  2. OMERO.forms OMERO.forms Public

    Extension to OMERO.web to enhance metadata input and provide provenance

    Python 9 8

  3. NL-BIOMERO NL-BIOMERO Public

    Forked from ome/docker-example-omero-grid

    NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurations and Compose files to deploy OMERO + BIOMERO subsystems …

    Shell 13 5

  4. omero-deployment-kit omero-deployment-kit Public

    deployment solution for OMERO designed for research institutions that require production-ready OMERO server with minimal hassle

    Jinja 7 1

  5. biomero-workflows biomero-workflows Public

    Gather workflows that can be used in BIOMERO

  6. NL-BioImageAnalysis-course2026 NL-BioImageAnalysis-course2026 Public

    Repository for the NL-BioImageAnalysis-course

    Jupyter Notebook 2

Repositories

Showing 10 of 28 repositories
  • BIOMERO.ZarrViewer Public

    BIOMERO OME-Zarr Viewer Extension

    NL-BioImaging/BIOMERO.ZarrViewer's past year of commit activity
    JavaScript 0 AGPL-3.0 0 2 0 Updated Oct 16, 2026
  • NL-BIOMERO Public Forked from ome/docker-example-omero-grid

    NL‑BIOMERO delivers a full containerized stack to run OMERO together with the BIOMERO 2.0 framework. It provides Docker/Podman configurations and Compose files to deploy OMERO + BIOMERO subsystems (importer, analyzer, OMERO.web plugin, databases, and auxiliary services) — the recommended starting point for a FAIR‑oriented bioimaging setup.

    NL-BioImaging/NL-BIOMERO's past year of commit activity
    Shell 13 16 1 3 Updated Oct 15, 2026
  • OMERO.biomero Public

    Plugin adding monitored, in-place uploads and workflows to OMERO Webclient

    NL-BioImaging/OMERO.biomero's past year of commit activity
    JavaScript 2 AGPL-3.0 1 2 4 Updated Oct 15, 2026
  • OMERO.Analysis Public

    Analyse OMERO data

    NL-BioImaging/OMERO.Analysis's past year of commit activity
    JavaScript 0 0 0 0 Updated Oct 15, 2026
  • fair-segmentation Public

    FAIR organelle segmentation pipeline

    NL-BioImaging/fair-segmentation's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Oct 15, 2026
  • napari-meta-tiff Public

    napari tiff reader with extended metadata

    NL-BioImaging/napari-meta-tiff's past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 15, 2026
  • OMERO.DataQueryWorker Public

    Hardened bounded-query service for immutable DuckDB, SQLite, and CSV sources

    NL-BioImaging/OMERO.DataQueryWorker's past year of commit activity
    Python 0 0 0 0 Updated Oct 15, 2026
  • fair-metadata-integration Public
    NL-BioImaging/fair-metadata-integration's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 14, 2026
  • biomero-template-container Public

    BIOMERO template container

    NL-BioImaging/biomero-template-container's past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Oct 14, 2026
  • biomero-converter Public

    Convert db image format to Ome-Tiff and Ome-Zarr

    NL-BioImaging/biomero-converter's past year of commit activity
    Python 1 Apache-2.0 0 1 0 Updated Oct 14, 2026
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