SynBioSuite

A web app to support the synthetic biology workflow.

Public Instance

A version of SynBioSuite is available at https://synbiosuite.org.

Frontend

Run Locally

Clone the project

git clone https://github.com/MyersResearchGroup/SynBioSuite

Go to the project directory

cd frontend

Install dependencies

npm install

Add .env file (see Environment Variables section below).

Start the development server

npm run dev

Environment Variables

To run this project, you will need to add the following environment variables to your .env file

VITE_SYNBIOSUITE_API The endpoint for the SynBioSuite Server. When running your own backend server, it should be set to: http://127.0.0.1:5003

VITE_IBIOSIM_API The endpoint for the iBioSim API. The application expects it to be behind an instance of the iBioSim API Connector. A public instance is available here: https://ibiosimconnector-api.azurewebsites.net/api/orchestrators/analyze

VITE_SBOL_CANVAS_URL An instance of SBOLCanvas. A public one is available here: https://sbolcanvas.org

VITE_SEQIMPROVE_URL An instance of SeqImprove. A public one is available here: https://seqimprove.org

Backend

A Python Flask server that supports SynBioSuite's interface with SynBioHub and Flapjack

Run locally using Docker

Go to main directory:

cd backend

Build the image:

docker build -t sbs_server .

Run the image:

docker run -p 5003:5003 sbs_server

The server will be running on localhost:5003

Working with Local Services

If you are running SynBioHub or Flapjack locally, you will need this command to allow the backend to communicate with these other local instances:

docker network connect synbio-network synbiosuite