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multitrait changes#531

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bhaller wants to merge 292 commits into
masterfrom
multitrait
Open

multitrait changes#531
bhaller wants to merge 292 commits into
masterfrom
multitrait

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@bhaller

@bhaller bhaller commented Jul 2, 2025

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This branch is the long-term branch for changes to implement multiple phenotypic traits in SLiM; it will likely become SLiM 5.1 or SLiM 6.0. It is is active development, and will often not build; it is not recommended for end users until further notice.

@codecov

codecov Bot commented Dec 21, 2025

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Codecov Report

❌ Patch coverage is 77.23343% with 79 lines in your changes missing coverage. Please review.
✅ Project coverage is 76.77%. Comparing base (4e2be2e) to head (4e02d60).

Files with missing lines Patch % Lines
core/haplosome.cpp 66.04% 55 Missing ⚠️
core/community_eidos.cpp 79.59% 10 Missing ⚠️
core/community.cpp 93.24% 5 Missing ⚠️
core/genomic_element.cpp 50.00% 3 Missing ⚠️
core/haplosome.h 50.00% 2 Missing ⚠️
core/interaction_type.cpp 90.90% 2 Missing ⚠️
core/chromosome.cpp 92.85% 1 Missing ⚠️
core/genomic_element_type.cpp 92.30% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #531      +/-   ##
==========================================
+ Coverage   75.85%   76.77%   +0.92%     
==========================================
  Files         114      118       +4     
  Lines       72808    78599    +5791     
  Branches    12877    14242    +1365     
==========================================
+ Hits        55230    60348    +5118     
- Misses      17578    18251     +673     
Files with missing lines Coverage Δ
core/chromosome.h 50.37% <100.00%> (+1.89%) ⬆️
core/community.h 100.00% <ø> (ø)
core/genomic_element.h 100.00% <ø> (ø)
core/genomic_element_type.h 100.00% <ø> (ø)
core/individual.cpp 60.89% <ø> (+5.86%) ⬆️
core/individual.h 32.75% <ø> (ø)
core/interaction_type.h 90.32% <ø> (ø)
core/log_file.cpp 29.52% <100.00%> (ø)
core/log_file.h 100.00% <ø> (ø)
core/main.cpp 10.97% <ø> (ø)
... and 18 more

... and 65 files with indirect coverage changes

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bhaller and others added 30 commits June 13, 2026 18:40
boolean not bool in schema types
small update to implementation of mutation storing
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2 participants