Issues

• Document boolean frame masks, including NumPy arrays, in the User Guide.

  MDAnalysis/UserGuide#445 · Filter by author sici17 opened on Sep 29, 2026

• [CI] black in pre-commit broken

  continuous integrationdefect
  Bug

  MDAnalysis/UserGuide#444 · Filter by author orbeckst opened on Sep 3, 2026

• Add mmcif/PDBx functionality

  next-release
  MDAnalysis/UserGuide#441 · Filter by author BradyAJohnston opened on Sep 2, 2026
  

• Incorrect time unit in RMSD example

  MDAnalysis/UserGuide#438 · Filter by author orbeckst opened on May 31, 2026

• Wrong psi angle in the illustration of dihedral angles in the user guide

  MDAnalysis/UserGuide#437 · Filter by author HoaSoup opened on Apr 7, 2026

• Error when trying to build PDF file with user guide

  defect
  MDAnalysis/UserGuide#435 · Filter by author DariuszKamil opened on Mar 6, 2026
  3

• Make a 2.10 release

  MDAnalysis/UserGuide#433 · Filter by author IAlibay opened on Nov 3, 2025
  2

• Add UserGuide documentation for IMDReader - reading streaming data with IMDv3 protocol

  MDAnalysis/UserGuide#427 · Filter by author amruthesht opened on Jul 25, 2025
  2

  

• Migrate content from API to UG - modules 1, 2, 3, 4

  SDG23
  MDAnalysis/UserGuide#417 · Filter by author namiroues opened on Mar 29, 2025

• "Building MDAnalysis" in the "Contributing to the main codebase" tutorial breaks when installing optional dependencies

  defectdeveloper-docs
  MDAnalysis/UserGuide#416 · Filter by author FNNunes opened on Mar 26, 2025
  3

• Remove dev versions automatically, or document manual removal

  MDAnalysis/UserGuide#412 · Filter by author lilyminium opened on Mar 10, 2025

• Removing material for modules moved to MDAKits?

  analysis
  MDAnalysis/UserGuide#395 · Filter by author fiona-naughton opened on Oct 22, 2024
  3

• duplicate labels

  defectgood-first-issue
  MDAnalysis/UserGuide#375 · Filter by author orbeckst opened on Aug 15, 2024
  2

• Update guessing docs

  MDAnalysis/UserGuide#365 · Filter by author lilyminium opened on Mar 25, 2024
  2

• Userguide is failing to deploy

  continuous integration
  MDAnalysis/UserGuide#362 · Filter by author IAlibay opened on Jan 15, 2024
  8

  

• update FAQ / basic philosophy

  MDAnalysis/UserGuide#341 · Filter by author orbeckst opened on Nov 7, 2023
  1

• Detail the deployment workflow

  MDAnalysis/UserGuide#340 · Filter by author IAlibay opened on Oct 29, 2023
  3

• Info about different options to load GROMACS data

  MDAnalysis/UserGuide#337 · Filter by author hp115 opened on Sep 29, 2023
  1

• [user story] The process of a PR (core repo)

  MDAnalysis/UserGuide#334 · Filter by author IAlibay opened on Sep 29, 2023
  5

• [user story] The process of a PR (userguide)

  MDAnalysis/UserGuide#333 · Filter by author IAlibay opened on Sep 29, 2023
  1

• How to use internal links in Jupyter notebooks

  MDAnalysis/UserGuide#332 · Filter by author lilyminium opened on Sep 29, 2023

• [User Story] Contributing data

  MDAnalysis/UserGuide#329 · Filter by author IAlibay opened on Sep 29, 2023

• [User Story] Non-code contributions

  MDAnalysis/UserGuide#328 · Filter by author IAlibay opened on Sep 29, 2023
  2

• Contributing documentation story

  MDAnalysis/UserGuide#327 · Filter by author lilyminium opened on Sep 29, 2023

• Units user story

  MDAnalysis/UserGuide#326 · Filter by author lilyminium opened on Sep 29, 2023
  1