Run ClairS-TO's Verdict against CHM13 instead of GRCh38 only - #197

Merged

ljwharbers merged 14 commits into

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feat/clairsto-verdict-chm13

Sep 21, 2026

Commits on Sep 17, 2026

Run ClairS-TO's Verdict against CHM13 instead of GRCh38 only

ljwharbers
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claude
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e759b5e
Restore the ClairS-TO output filenames that 0.5.1 renamed

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ac2812b
Join the Verdict resource channels instead of merging them

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d310ddb
Regenerate the pipeline snapshots for ClairS-TO 0.5.1

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5993fd6
Run ClairS-TO once per tumour-only sample on CHM13

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3a6248b
Trim inline comments in the files this PR touches

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663550c
Find the Verdict resource files inside the directory UNZIP hands over

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51a6516

Commits on Sep 18, 2026

Pin the ClairS-TO image that CI can actually read

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cc2eb06
Tag ClairS-TO calls from ASCAT's purity and copy number when ASCAT runs

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8ec352a
Merge origin/dev into the ClairS-TO Verdict CHM13 branch

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500e9c0
Say in the docs what --skip_ascat's purity estimate is still worth

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eb09016
Build the Verdict resource set only when ClairS-TO reads it

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a58d1f2
Publish the tables Verdict tagged from on --skip_ascat runs too

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8a3d5ca
Cover both germline tagging paths with a stub nf-test

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8a63f78