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IntGenomicsLab
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lrsomatic
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Add savana module
- #189
#189
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ljwharbers
merged 7 commits into
IntGenomicsLab:dev
IntGenomicsLab/lrsomatic:dev
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YannVRB:add-savana-module
YannVRB/lrsomatic:add-savana-module
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Sep 22, 2026
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Add savana module
#189
ljwharbers
merged 7 commits into
IntGenomicsLab:dev
IntGenomicsLab/lrsomatic:dev
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YannVRB:add-savana-module
YannVRB/lrsomatic:add-savana-module
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Commits on Sep 2, 2026
Add SAVANA structural variant and copy-number calling
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Fix savana/cna's --ref_index arg and add test-profile chromosome scoping
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Add CHM13 CI test profile for SAVANA integration
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Commits on Sep 3, 2026
Address review: fix one-sample bug, wrong CNA input, PacBio classification, add contigs/g1000_vcf
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Commits on Sep 9, 2026
Address round-2 review: fix chm13.nf.test's double -profile, tune SAVANA's test-profile coverage floors
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Commits on Sep 21, 2026
Merge origin/dev into add-savana-module
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Fix VEP_SAVANA call for dev's new ENSEMBLVEP_VEP signature; regenerate snapshots
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