GitHub - Duke-GCB/majoros-python-utils: Majoros lab python modules and scripts

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 87 Commits
Bed3Record.py		Bed3Record.py
Bed6Record.py		Bed6Record.py
BedGene.py		BedGene.py
BedGeneReader.py		BedGeneReader.py
BedReader.py		BedReader.py
CigarOp.py		CigarOp.py
CigarString.py		CigarString.py
Codon.py		Codon.py
CodonIterator.py		CodonIterator.py
ConfigFile.py		ConfigFile.py
DataFrame.py		DataFrame.py
DataFrameRow.py		DataFrameRow.py
EssexNode.py		EssexNode.py
EssexParser.py		EssexParser.py
EssexScanner.py		EssexScanner.py
EssexToken.py		EssexToken.py
Exon.py		Exon.py
FastaReader.py		FastaReader.py
FastaWriter.py		FastaWriter.py
Fastb.py		Fastb.py
FastbTrack.py		FastbTrack.py
FastqReader.py		FastqReader.py
Fisher2x2.py		Fisher2x2.py
GFF3Parser.py		GFF3Parser.py
Gene.py		Gene.py
GffTranscriptReader.py		GffTranscriptReader.py
Integer.py		Integer.py
Interval.py		Interval.py
MatrixMarket.py		MatrixMarket.py
NgramIterator.py		NgramIterator.py
Pipe.py		Pipe.py
ProgramName.py		ProgramName.py
Rex.py		Rex.py
SamMDtagParser.py		SamMDtagParser.py
SamReader.py		SamReader.py
SamRecord.py		SamRecord.py
Shuffler.py		Shuffler.py
SlurmWriter.py		SlurmWriter.py
SmithWaterman.py		SmithWaterman.py
Stan.py		Stan.py
StanParser.py		StanParser.py
Strand.py		Strand.py
SumLogProbs.py		SumLogProbs.py
SummaryStats.py		SummaryStats.py
TempFilename.py		TempFilename.py
Transcript.py		Transcript.py
Translation.py		Translation.py
__init__.py		__init__.py
essex-pretty-print.py		essex-pretty-print.py
extract-gaa.py		extract-gaa.py
fastb-lengths.py		fastb-lengths.py
get-SNP-IDs.py		get-SNP-IDs.py
hello-world.py		hello-world.py
make-bam-slurms.py		make-bam-slurms.py
make-fastqc-slurms.py		make-fastqc-slurms.py
make-star-slurms.py		make-star-slurms.py
new-python-class.py		new-python-class.py
parse-stan.py		parse-stan.py
parse-vcf.py		parse-vcf.py
popstar-step1.py		popstar-step1.py
popstar-step2.py		popstar-step2.py
random-dna.py		random-dna.py
rank-variants.py		rank-variants.py
reverse.py		reverse.py
setup.py		setup.py
sort-matrixmarket.py		sort-matrixmarket.py
summarize-stan.py		summarize-stan.py
template.py		template.py
test-bed.py		test-bed.py
test-essex.py		test-essex.py
test-fasta-reader.py		test-fasta-reader.py
test-fastb.py		test-fastb.py
test-pipe.py		test-pipe.py
test-transcript-reader.py		test-transcript-reader.py