various improvements july26 - #59
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## spectra_analysis.py - add find_shift ## spectra.py - add shift() ## spectra_container.py - add align_spectra to average and subtraction - add plot() ## tests - add tests
## hdfmap_generic.py - add ROI_SUFFIXES ## nexus_scan.py - add rois() ## nxxas_loader.py - add custom ROI on i16 vortext load.
## experiment.py - replaced _scan_numbers with all_scan_numbers - allow scans to be loaded from NexusScan objects - add get_scan_number() - add get_nearby_scan_numbers() - improved find_scans - add get_value_changes() Add examples and tests. All tests pass. ## xas/container_functions.py - add find_similar_measurements
Fix for #51
Also add tests for NexusScan and improve doc strings
## nexus_scan.py - add NexusScan.start_end_duration() - add default to NexusScan.times() - add NexusScan.get_scan_time() ## file_functions.py - add get_file_time() ## exp_plot_manager.py - add use_time option to ExperimentPlotManager.metadata
## nexus_scan.py - add NexusScan.replace_default_names() ## misc_functions.py - add multi_replace() ## fit_functions.py - add guess for model_fit() ## fitting/results.py - add yinit parameter ## Examples - improve example_peak_fits.py - improve peak_fitting.md - add example_peak_fits2.py as old version
## nexus_scan.py - add NexusScan.replace_default_names() - change to NexusScan.get_plot_axis() to include expressions. ## misc_functions.py - add multi_replace() ## fit_functions.py - add guess for model_fit() ## fitting/results.py - add yinit parameter ## Examples - improve example_peak_fits.py - improve peak_fitting.md - add example_peak_fits2.py as old version
…26' into dp/various_xas_improvements_july26 # Conflicts: # mmg_toolbox/nexus/nexus_scan.py
## nexus_scan.py - add NexusScan.save(), .save_nxdata(), and .save_csv() - add load functions to load the saved data. - add tests All tests pass.
## tkgui/widgets/scan_selector.py - add copy scan number and copy metadata to right click menu
## Added misc/phase_plates.py - misc is location or arbitary analysis code - plate_plates.py contains normalisation "vimpire teeth" analysis from Py16.plotqbpm - Code needs refinement but it works - Tests needed - Fix for issue #34 ## scripts - added qbpm_script.py
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Various improvements and fixes, plus additions to the documentation and examples.
Alignment for XAS Spectra
ROI definition improvements
2D mesh grids
NexusScan Time functions
NexusScan improvements
New misc functions
TKGUI