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ConesaLab - Genomics of gene expression

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  1. SQANTI3 SQANTI3 Public

    Tool for the Quality Control of Long-Read Defined Transcriptomes

    Python 281 67

  2. MultiPower MultiPower Public

    Statistical power studies for multi-omics experiments.

    R 35 10

  3. tappAS tappAS Public

    This repository contains the source code for the tappAS application. See README for details.

    Java 22 3

  4. acorde acorde Public

    Isoform co-usage networks from single-cell RNA-seq data

    HTML 18 6

  5. SQANTI SQANTI Public

    Python 15 3

  6. TCR_nextflow TCR_nextflow Public

    Nextflow 14 2

Repositories

Showing 10 of 43 repositories
  • join_and_call_paper Public

    Code for the join & call publication

    ConesaLab/join_and_call_paper's past year of commit activity
    Shell 2 MIT 0 0 0 Updated Oct 7, 2026
  • SQANTI-single-cell Public

    Repository for development of new single cell SQANTI tool

    ConesaLab/SQANTI-single-cell's past year of commit activity
    Python 8 MIT 0 1 0 Updated Oct 7, 2026
  • IsoAnnot Public
    ConesaLab/IsoAnnot's past year of commit activity
    Python 11 2 2 0 Updated Oct 7, 2026
  • SQANTI3 Public

    Tool for the Quality Control of Long-Read Defined Transcriptomes

    ConesaLab/SQANTI3's past year of commit activity
    Python 281 GPL-3.0 67 12 (1 issue needs help) 1 Updated Oct 6, 2026
  • PaintOmics Public

    Integrative visualization and analysis of multi-omics data on KEGG, Reactome and MapMan pathways, with an AI agent that interprets the results and cites the literature.

    ConesaLab/PaintOmics's past year of commit activity
    Python 10 GPL-3.0 0 0 1 Updated Oct 5, 2026
  • SQANTI_evidence Public

    Repository to develop the snakemake pipeline to produce an long-reads guided structural annotation

    ConesaLab/SQANTI_evidence's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Sep 17, 2026
  • STIMA Public

    Spatial Transcriptomics Image-based Methods for Alignment

    ConesaLab/STIMA's past year of commit activity
    R 4 0 0 0 Updated Sep 14, 2026
  • Basant-TFM Public

    Supplementary materials for Basant’s MSc thesis (comparing AlphaFold2-predicted structural confidence among FSM, NIC and NNC protein isoforms).

    ConesaLab/Basant-TFM's past year of commit activity
    Promela 0 MIT 0 0 0 Updated Sep 8, 2026
  • ConesaLab/courses-SQANTI_verse's past year of commit activity
    HTML 9 0 0 0 Updated Jul 23, 2026
  • SQANTI-browser Public

    Tool for visualisation of SQANTI3 Long-Read Defined Transcriptomes in the UCSC Genome Browser

    ConesaLab/SQANTI-browser's past year of commit activity
    HTML 10 GPL-3.0 0 0 0 Updated Jul 15, 2026

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