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Fix regional overlap validation and suboptimal output filtering
- #253
#253
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martin-raden
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Oct 5, 2026
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Fix regional overlap validation and suboptimal output filtering
#253
martin-raden
merged 9 commits into
master
BackofenLab/IntaRNA:master
from
docs/212-overlap-analysis
BackofenLab/IntaRNA:docs/212-overlap-analysis
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Commits on Oct 2, 2026
docs: analyze output overlap behavior for issue 212
Alexander-Mitrofanov
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docs: define distinct boundaries for suboptimal predictions
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fix: enumerate finalized heuristic ensemble site energies
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fix: reject regional merging with unsupported overlap constraints
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fix: validate output sites in heuristic suboptimal selection
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fix: enforce a global energy window when merging regions
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docs: retain and explain restricted enumeration limits
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test: verify overlap filtering against the tiny structure oracle
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fix: normalize single-pair suboptimals before reporting
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