Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- harp-wasm-experiment Public
Vertical prototype: harp-protocol/harp-device running in the browser via Pyodide, over Web Serial
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- Aind.Behavior.VrForaging.Packaging Public
A repository to package primary data from Aind.Behavior.VrForaging
- openscope-community-predictive-processing Public
This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
- dynamicrouting-encoding-standalone Public Forked from AllenNeuralDynamics/dynamicrouting-encoding-io
- openscope-params Public
- ophys-passive-visual-stim Public
Bonsai workflows for VCO passive visual stimulation used by AIND Ophys
- aind-smartspim-ccf-registration Public
Registration of lightsheet whole brain images to the Allen CCF V3 Atlas
- harp.device.quac Public
0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC
- ctl-claude-skills-pipeline-runs Public
A set of Claude Code skills for processing data for Cell Types and Learning project (aka learning mFISH)
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