From 55e36eca46088d64f673c556b9440c7dd4bb985a Mon Sep 17 00:00:00 2001 From: Eric Larson Date: Thu, 13 Aug 2026 09:06:03 -0500 Subject: [PATCH 1/6] Add issue-opener when wheels are almost dead --- .github/workflows/ci.yml | 16 + .github/workflows/stale-wheels.yml | 61 ++++ .gitignore | 2 + README.md | 12 + tests/test_check_stale_wheels.py | 120 +++++++ tests/test_check_stale_wheels.py.lock | 428 +++++++++++++++++++++++ tools/check_stale_wheels.py | 476 ++++++++++++++++++++++++++ tools/check_stale_wheels.py.lock | 366 ++++++++++++++++++++ 8 files changed, 1481 insertions(+) create mode 100644 .github/workflows/stale-wheels.yml create mode 100755 tests/test_check_stale_wheels.py create mode 100644 tests/test_check_stale_wheels.py.lock create mode 100755 tools/check_stale_wheels.py create mode 100644 tools/check_stale_wheels.py.lock diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index e4e739b..63e6905 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -15,6 +15,22 @@ concurrency: cancel-in-progress: true jobs: + test-stale-wheels: + name: "test stale wheel check" + # No secrets needed, so this one can also run on forks + runs-on: ubuntu-latest + + steps: + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + + - name: Install the latest version of uv + uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 + with: + python-version: '3.13' + + - name: Run the tests + run: uv run --frozen tests/test_check_stale_wheels.py + test: name: "test upload via action" runs-on: ubuntu-latest diff --git a/.github/workflows/stale-wheels.yml b/.github/workflows/stale-wheels.yml new file mode 100644 index 0000000..e89587f --- /dev/null +++ b/.github/workflows/stale-wheels.yml @@ -0,0 +1,61 @@ +name: Report stale wheels + +on: + # Run daily at 0:23 UTC, an hour before "Remove old wheels" + schedule: + - cron: '23 0 * * *' + workflow_dispatch: + inputs: + dry_run: + description: 'Report findings without opening or closing any issues' + type: boolean + default: true + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +jobs: + report: + + runs-on: ubuntu-latest + if: github.repository_owner == 'scientific-python' + # Needed to open an issue here if we cannot reach a project's own tracker + permissions: + issues: write + + steps: + - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 + + - name: Install the latest version of uv + uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 + with: + python-version: '3.13' + + - name: Check for stale wheels + env: + ISSUE_OPENER_TOKEN: ${{ secrets.ISSUE_OPENER_TOKEN }} + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + run: | + uv run --frozen tools/check_stale_wheels.py ${{ inputs.dry_run && '--dry-run' || '' }} + + # A scheduled job that quietly stops working is exactly the failure mode this + # workflow exists to prevent, so make it noisy about itself too. + - name: Report that this workflow failed + if: failure() + env: + GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} + TITLE: The stale nightly wheel check is failing + RUN_URL: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} + run: | + body="[This run](${RUN_URL}) of \`${GITHUB_WORKFLOW}\` failed, so projects whose nightly + wheels are about to be removed from the channel are no longer being notified." + + number=$(gh issue list --repo "${GITHUB_REPOSITORY}" --state open --json number,title \ + --jq 'map(select(.title == env.TITLE)) | .[0].number // ""') + + if [ -n "${number}" ]; then + gh issue comment "${number}" --repo "${GITHUB_REPOSITORY}" --body "${body}" + else + gh issue create --repo "${GITHUB_REPOSITORY}" --title "${TITLE}" --body "${body}" + fi diff --git a/.gitignore b/.gitignore index 096b5eb..3cf3cb8 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,5 @@ # pixi environments .pixi *.egg-info +__pycache__ +.pytest_cache diff --git a/README.md b/README.md index 9bb9dcf..860da9e 100644 --- a/README.md +++ b/README.md @@ -86,6 +86,18 @@ In addition cron jobs in GitHub repositories will be disabled after a certain am We are not aware of a solution other than regular commit activity to prevent the deactivation of scheduled cron jobs. +### Stale wheel reminders + +So that the removal above does not come as a surprise, a daily job in this repository checks how +long ago each package was last uploaded. If it has been more than **15 days**, the job opens an +issue on that project's own issue tracker naming the date its wheels will be removed, comments once +more at 25 days, and closes the issue automatically once a new wheel is uploaded. Issues are opened +by [@scientific-python-bot][bot]; the repository to report to is taken from the project's PyPI +metadata (`Project-URL`), so keeping those URLs pointed at your GitHub repository is enough to be +reachable. + +[bot]: https://github.com/scientific-python-bot + # Using nightly builds in CI diff --git a/tests/test_check_stale_wheels.py b/tests/test_check_stale_wheels.py new file mode 100755 index 0000000..fa9e85a --- /dev/null +++ b/tests/test_check_stale_wheels.py @@ -0,0 +1,120 @@ +#!/usr/bin/env python +# /// script +# dependencies = [ +# "PyGithub", +# "pytest", +# "requests", +# ] +# requires-python = ">=3.11" +# +# [tool.uv] +# # month window to find security issues +# exclude-newer = "30 days" +# /// +"""Tests for ``tools/check_stale_wheels.py``.""" + +import sys +from pathlib import Path + +import pytest + +sys.path.insert(0, str(Path(__file__).resolve().parent.parent / "tools")) + +import check_stale_wheels + +# Real metadata, trimmed to the keys that matter. Every case here is one that a +# package on the channel actually exercises. +CASES = { + # The tracker wins over equally valid alternatives. + "scikit-learn": ( + { + "source": "https://github.com/scikit-learn/scikit-learn", + "tracker": "https://github.com/scikit-learn/scikit-learn/issues", + "download": "https://pypi.org/project/scikit-learn/#files", + }, + "scikit-learn/scikit-learn", + ), + # github.com/orgs/ is not a repository, and must not win over the real one. + "scikit_build_core": ( + { + "Discussions": "https://github.com/orgs/scikit-build/discussions", + "Homepage": "https://github.com/scikit-build/scikit-build-core", + }, + "scikit-build/scikit-build-core", + ), + # An unrecognized key ("upstream") must not beat a recognized one. + "scipy-openblas32": ( + { + "homepage": "https://github.com/MacPython/openblas-libs", + "upstream": "https://github.com/OpenMathLib/OpenBLAS", + }, + "MacPython/openblas-libs", + ), + # Deep links are trimmed back to owner/repo. This one is also a repository that + # has since been renamed, which resolve() canonicalizes separately. + "awkward": ( + {"Bug Tracker": "https://github.com/scikit-hep/awkward-1.0/issues"}, + "scikit-hep/awkward-1.0", + ), + # A blob URL is still only useful for the owner/repo part. + "python-flint": ( + { + "Changelog": "https://github.com/flintlib/python-flint/blob/master/README.md#changelog", + "Repository": "https://github.com/flintlib/python-flint", + }, + "flintlib/python-flint", + ), + # home_page is folded in under a key we recognize. + "pyproj": ({"home": "https://github.com/pyproj4/pyproj"}, "pyproj4/pyproj"), + # Hyphenated and spaced spellings of the same keys both count. + "xarray": ( + { + "issue-tracker": "https://github.com/pydata/xarray/issues", + "source-code": "https://github.com/pydata/xarray", + }, + "pydata/xarray", + ), + # A repository visible only through a key that doesn't name it is not trusted; + # such a project needs a PYPI_MAP entry rather than a guess. + "changelog-only": ({"Changelog": "https://github.com/foo/bar/releases"}, None), + # Nothing on GitHub: PYPI_MAP has to cover these. + "icechunk": ({"Homepage": "https://icechunk.io", "Docs": "https://docs.earthmover.io"}, None), + "nothing-at-all": ({}, None), +} + + +@pytest.fixture +def project_urls(monkeypatch): + """Serve canned PyPI metadata instead of hitting the network.""" + + def fake(name): + return CASES[name][0] + + monkeypatch.setattr(check_stale_wheels, "pypi_project_urls", fake) + + +@pytest.mark.parametrize("name", list(CASES)) +def test_repo_from_pypi(project_urls, name): + assert check_stale_wheels.repo_from_pypi(name) == CASES[name][1] + + +@pytest.mark.parametrize( + "url, expected", + [ + ("https://github.com/foo/bar.git", "foo/bar"), + ("http://github.com/foo/bar", "foo/bar"), + ("https://www.github.com/foo/bar", "foo/bar"), + ("https://GitHub.com/Foo/Bar", "Foo/Bar"), + ("https://github.com/foo/bar#readme", "foo/bar"), + ("https://gitlab.com/foo/bar", None), + ("https://github.com/orgs/foo/discussions", None), + ("https://example.com", None), + ], +) +def test_repo_from_pypi_url_forms(monkeypatch, url, expected): + monkeypatch.setattr(check_stale_wheels, "pypi_project_urls", lambda name: {"source": url}) + assert check_stale_wheels.repo_from_pypi("whatever") == expected + + +if __name__ == "__main__": + sys.exit(pytest.main([__file__, "-v"])) diff --git a/tests/test_check_stale_wheels.py.lock b/tests/test_check_stale_wheels.py.lock new file mode 100644 index 0000000..44fa020 --- /dev/null +++ b/tests/test_check_stale_wheels.py.lock @@ -0,0 +1,428 @@ +version = 1 +revision = 3 +requires-python = ">=3.11" + +[options] +exclude-newer = "0001-01-01T00:00:00Z" # This has no effect and is included for backwards compatibility when using relative exclude-newer values. +exclude-newer-span = "P30D" + +[manifest] +requirements = [ + { name = "pygithub" }, + { name = "pytest" }, + { name = "requests" }, +] + +[[package]] +name = "certifi" +version = 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--git a/tools/check_stale_wheels.py b/tools/check_stale_wheels.py new file mode 100755 index 0000000..bb5b195 --- /dev/null +++ b/tools/check_stale_wheels.py @@ -0,0 +1,476 @@ +#!/usr/bin/env python +# /// script +# dependencies = [ +# "PyGithub", +# "requests", +# ] +# requires-python = ">=3.11" +# +# [tool.uv] +# # month window to find security issues +# exclude-newer = "30 days" +# /// +"""Report projects whose nightly wheels are about to be removed from the channel. + +Wheels older than the retention period are deleted by ``remove-wheels.yml``, which +can leave a project with no nightly wheels at all and break downstream CI. This +script runs on a schedule from this repository, finds packages whose most recent +upload is older than the warning threshold, and opens an issue on the project's +own tracker so the maintainers hear about it before the wheels disappear. + +Requires ``ISSUE_OPENER_TOKEN`` (a classic token with the ``public_repo`` scope, +used to open issues on other projects) and ``GITHUB_TOKEN`` (used only to report +here when a project's tracker can't be reached). +""" + +from __future__ import annotations + +import argparse +import os +import re +import sys +import urllib.parse +from collections import defaultdict +from concurrent.futures import ThreadPoolExecutor +from dataclasses import dataclass +from datetime import datetime, timedelta, timezone +from pathlib import Path + +import requests +from github import Auth, Github, GithubException + +ANACONDA_USER = "scientific-python-nightly-wheels" +ANACONDA_API = "https://api.anaconda.org" +CHANNEL_URL = f"https://anaconda.org/{ANACONDA_USER}" +ACTION_URL = "https://github.com/scientific-python/upload-nightly-action" +POLICY_URL = f"{ACTION_URL}#artifact-cleanup-policy-at-the-scientific-python-nightly-wheels-channel" + +# Hidden markers let us find our own issues and comments again without relying on +# the (fuzzy, eventually consistent) search API. +MARKER = "" +FINAL_WARNING_MARKER = "" +REPORT_MARKER = "" + +# Open an issue once wheels are this old, follow up once at FINAL_WARNING_DAYS, and +# keep RETENTION_DAYS in step with remove-wheels.yml, which does the deleting. +WARN_DAYS = 15 +FINAL_WARNING_DAYS = 25 +RETENTION_DAYS = 30 + +# Don't nag again about a package whose issue was closed without a new upload +# until this much time has passed. +RENOTIFY_DAYS = 60 + +# Packages whose GitHub repository can't be discovered from their PyPI metadata. +# Prefer fixing Project-URL metadata upstream over adding entries here. +PYPI_MAP = { + "icechunk": "earth-mover/icechunk", +} + +SCRIPT = Path(__file__).name +IGNORE_FILE = Path(__file__).resolve().parent.parent / "packages-ignore-from-cleanup.txt" +SESSION = requests.Session() +SESSION.headers["User-Agent"] = "scientific-python-upload-nightly-action" + +# Ambient run configuration, set once by main(). +GH: Github = None +LOGIN = "" +DRY_RUN = False + +_GITHUB_REPO_RE = re.compile( + r"^https?://(?:www\.)?github\.com/(?!orgs/)([^/]+)/([^/#?]+)", re.IGNORECASE +) +# Substrings of the Project-URL keys that name a project's own repository, best +# first. Matching on substrings covers "Bug Tracker", "issue-tracker", and friends; +# keys naming something else ("Changelog", "Discussions", "upstream") are ignored. +_REPO_URL_KEYS = ("tracker", "issues", "source", "repository", "homepage", "home") +# Everything we treat as "this package could not be checked" rather than a crash. +REPORTABLE = (GithubException, RuntimeError, requests.RequestException) + + +def fetch(url): + """Read JSON from a public API (anaconda.org, PyPI), or None if missing.""" + response = SESSION.get(url, timeout=60) + if response.status_code == 404: + return None + response.raise_for_status() + return response.json() + + +@dataclass +class Package: + name: str + last_upload: datetime | None = None + repo: object = None # github.Repository, once resolved + status: str = "" + issue_url: str | None = None + error: str | None = None + + def age_days(self, now): + return (now - self.last_upload).days + + +def list_packages(ignored): + return [ + package["name"] + for package in fetch(f"{ANACONDA_API}/packages/{ANACONDA_USER}") + if package["name"] not in ignored + ] + + +def last_upload_time(name): + """Return the newest upload time across every version of ``name``. + + ``latest_version`` is not reliable here: nightly version strings are not + ordered consistently across projects, so an older release can sort last. + """ + package = fetch(f"{ANACONDA_API}/package/{ANACONDA_USER}/{name}") + if package is None: + return None + uploads = [] + for version in package["versions"]: + quoted = urllib.parse.quote(version, safe="") + release = fetch(f"{ANACONDA_API}/release/{ANACONDA_USER}/{name}/{quoted}") + for distribution in (release or {}).get("distributions", []): + uploads.append(datetime.fromisoformat(distribution["upload_time"])) + if not uploads: + return None + return max(uploads).astimezone(timezone.utc) + + +def read_ignored(path): + """Read the package names that are exempt from automated cleanup.""" + names = set() + for line in Path(path).read_text().splitlines(): + line = line.split("#", 1)[0].strip() + if line: + names.add(line) + return names + + +def pypi_project_urls(name): + """Return a package's PyPI Project-URLs, keyed as the project wrote them.""" + info = fetch(f"https://pypi.org/pypi/{urllib.parse.quote(name)}/json") + if info is None: + return {} + urls = dict(info["info"].get("project_urls") or {}) + if info["info"].get("home_page"): + urls.setdefault("home", info["info"]["home_page"]) + return urls + + +def repo_from_pypi(name): + """Find the ``owner/repo`` a package's PyPI metadata points at.""" + candidates = [] + for key, url in pypi_project_urls(name).items(): + match = _GITHUB_REPO_RE.match(str(url)) + if not match: + continue + key = key.strip().lower() + priority = next((i for i, want in enumerate(_REPO_URL_KEYS) if want in key), None) + if priority is None: + continue + owner, repo = match.groups() + candidates.append((priority, owner + "/" + repo.removesuffix(".git"))) + if not candidates: + return None + return min(candidates)[1] + + +def target_repo(name): + """Return the repository to report to, following renames.""" + full_name = PYPI_MAP.get(name) or repo_from_pypi(name) + if full_name is None: + raise RuntimeError( + f"no GitHub repository found in the Project-URL metadata at " + f"https://pypi.org/project/{name}/ — add a tracker, source, repository, or " + f"homepage URL there, or add an entry to PYPI_MAP in {SCRIPT}" + ) + repo = GH.get_repo(full_name) + if repo.archived: + raise RuntimeError(f"repository {repo.full_name} is archived") + if not repo.has_issues: + raise RuntimeError(f"repository {repo.full_name} has issues disabled") + return repo + + +def resolve(name): + """Look up when a package was last uploaded and where to report about it.""" + package = Package(name=name) + try: + package.last_upload = last_upload_time(name) + if package.last_upload is None: + raise RuntimeError("no wheels found on the channel") + package.repo = target_repo(name) + except REPORTABLE as exc: + package.status = "error" + package.error = f"`{name}`: {exc}" + return package + + +def bot_issues(repo): + """Return this bot's issues on ``repo`` that carry our marker, newest first. + + Deliberately unbounded in time: an issue we opened months ago and never + commented on again is exactly the one we must find, both to close it when + wheels reappear and to avoid opening a duplicate beside it. The list stays + short in practice, since a well-behaved run opens at most one per repository. + """ + issues = repo.get_issues(state="all", creator=LOGIN, sort="created", direction="desc") + return [ + issue for issue in issues if issue.pull_request is None and MARKER in (issue.body or "") + ] + + +def describe(packages): + names = [f"`{package.name}`" for package in packages] + if len(names) == 1: + return names[0] + return ", ".join(names[:-1]) + " and " + names[-1] + + +def issue_title(stale, age): + names = ", ".join(package.name for package in stale) + return f"No {names} nightly wheels uploaded in {age} days" + + +def issue_body(stale, age, removal_date): + uploads = "\n".join(f"- `{package.name}`: {package.last_upload:%Y-%m-%d}" for package in stale) + return f"""\ +{MARKER} +The most recent {describe(stale)} nightly wheels on the \ +[`{ANACONDA_USER}`]({CHANNEL_URL}) channel were uploaded **{age} days ago**: + +{uploads} + +Wheels are [removed after {RETENTION_DAYS} days]({POLICY_URL}), so unless a new nightly is \ +uploaded before **{removal_date:%Y-%m-%d}** there will be no wheels left on the channel at all, \ +and downstream projects that test against nightlies will fail to install them. + +Some things worth checking: + +- Is the workflow that builds and uploads the nightly wheels failing? +- Was its scheduled run \ +[disabled by GitHub](https://docs.github.com/en/actions/how-tos/manage-workflow-runs/disable-and-enable-a-workflow) \ +after a period of repository inactivity? +- Has there simply been nothing to build? Uploading on a fixed cadence even when nothing has \ +changed keeps the channel populated for downstream users. + +This issue was opened automatically from [scientific-python/upload-nightly-action]({ACTION_URL}), \ +and will be closed automatically once a new wheel is uploaded. +""" + + +def create_issue(repo, title, body): + if DRY_RUN: + print(f" [dry run] would open an issue on {repo.full_name}: {title}") + return None + return repo.create_issue(title=title, body=body).html_url + + +def comment(issue, body): + if DRY_RUN: + print(f" [dry run] would comment on {issue.html_url}") + return + issue.create_comment(body) + + +def close_issue(issue, body): + comment(issue, body) + if DRY_RUN: + print(f" [dry run] would close {issue.html_url}") + return + issue.edit(state="closed", state_reason="completed") + + +def handle_fresh(packages, issues): + """Close any issue we opened now that new wheels have shown up.""" + for package in packages: + package.status = "ok" + open_issues = [issue for issue in issues if issue.state == "open"] + if not open_issues: + return + newest = max(package.last_upload for package in packages) + for issue in open_issues: + for package in packages: + package.status = "resolved" + package.issue_url = issue.html_url + close_issue( + issue, f"New nightly wheels were uploaded on {newest:%Y-%m-%d}. Thanks! Closing." + ) + + +def handle_stale(repo, stale, issues, now): + age = max(package.age_days(now) for package in stale) + oldest = min(package.last_upload for package in stale) + removal_date = oldest + timedelta(days=RETENTION_DAYS) + open_issues = [issue for issue in issues if issue.state == "open"] + + def mark(status, url): + for package in stale: + package.status = status + package.issue_url = url + + if not open_issues: + recent = [issue for issue in issues if (now - issue.created_at).days < RENOTIFY_DAYS] + if recent: + # An issue we opened was closed without new wheels appearing; give the + # project some quiet before raising it again. + mark("muted", recent[0].html_url) + return + url = create_issue( + repo, + issue_title(stale, age), + issue_body(stale, age, removal_date), + ) + mark("opened", url) + return + + issue = open_issues[0] + mark("reported", issue.html_url) + if age < FINAL_WARNING_DAYS: + return + if any(FINAL_WARNING_MARKER in (item.body or "") for item in issue.get_comments()): + return + mark("final warning", issue.html_url) + comment( + issue, + f"{FINAL_WARNING_MARKER}\nStill no new nightly wheels for {describe(stale)}. The " + f"remaining wheels are scheduled to be removed from the channel on " + f"**{removal_date:%Y-%m-%d}**.", + ) + + +def handle_repo(repo, packages, now): + """Open, update, or close one issue for every package built from ``repo``.""" + stale = [package for package in packages if package.age_days(now) >= WARN_DAYS] + try: + issues = bot_issues(repo) + if stale: + handle_stale(repo, stale, issues, now) + for package in packages: + if package not in stale: + package.status = "ok" + else: + handle_fresh(packages, issues) + except REPORTABLE as exc: + for package in packages: + package.status = "error" + package.error = f"`{package.name}` ({repo.full_name}): {exc}" + + +def write_summary(packages, now): + lines = [ + f"## Nightly wheel freshness ({now:%Y-%m-%d})", + "", + "| Package | Last upload | Age (days) | Repository | Status |", + "| --- | --- | --- | --- | --- |", + ] + epoch = datetime.min.replace(tzinfo=timezone.utc) + for package in sorted(packages, key=lambda p: p.last_upload or epoch): + age = "?" if package.last_upload is None else package.age_days(now) + upload = "?" if package.last_upload is None else f"{package.last_upload:%Y-%m-%d}" + name = package.repo.full_name if package.repo else None + repo = f"[{name}](https://github.com/{name})" if name else "—" + status = package.status + if package.issue_url: + status = f"[{status}]({package.issue_url})" + if package.error: + # Keep the table readable; the full text, including how to fix it, goes + # in the issue report_errors opens. + status = f"error: {package.error.split(': ', 1)[-1].split(' — ')[0]}" + elif age != "?" and age >= WARN_DAYS: + age = f"**{age}**" + lines.append(f"| {package.name} | {upload} | {age} | {repo} | {status} |") + summary = "\n".join(lines) + print(summary) + if os.environ.get("GITHUB_STEP_SUMMARY"): + with open(os.environ["GITHUB_STEP_SUMMARY"], "a") as fid: + fid.write(summary + "\n") + + +def report_errors(errors): + """Open (or update) an issue here about projects we could not reach. + + This uses GITHUB_TOKEN rather than the bot's token: the thing that failed may + well be the bot's token itself. + """ + run_id = os.environ.get("GITHUB_RUN_ID") + check = "stale wheel check" + if run_id: + server = os.environ.get("GITHUB_SERVER_URL", "https://github.com") + check = f"[{check}]({server}/{os.environ['GITHUB_REPOSITORY']}/actions/runs/{run_id})" + body = ( + f"{REPORT_MARKER}\nThese packages are on the " + f"[`{ANACONDA_USER}`]({CHANNEL_URL}) channel, but the " + f"{check} could not work out where to report about them, so " + f"nobody will hear from us when their wheels are about to be removed:\n\n" + + "\n".join(f"- {error}" for error in errors) + + "\n\nThis list is rewritten on every run, and the issue can be closed once it is empty." + ) + if DRY_RUN: + print(f"\n[dry run] could not report on {len(errors)} project(s):\n{body}") + return + home = Github(auth=Auth.Token(os.environ["GITHUB_TOKEN"])).get_repo( + os.environ.get("GITHUB_REPOSITORY", "scientific-python/upload-nightly-action") + ) + existing = [ + issue + for issue in home.get_issues(state="open") + if issue.pull_request is None and REPORT_MARKER in (issue.body or "") + ] + if not existing: + create_issue(home, "Could not report stale nightly wheels", body) + elif existing[0].body != body: + # Rewrite rather than comment: this runs daily, and an unfixed package would + # otherwise collect a comment a day. Editing notifies nobody. + existing[0].edit(body=body) + + +def main(argv=None): + global GH, LOGIN, DRY_RUN + + parser = argparse.ArgumentParser(description=__doc__) + parser.add_argument( + "--dry-run", + action="store_true", + help="report what would happen without opening, commenting on, or closing issues", + ) + args = parser.parse_args(argv) + + DRY_RUN = args.dry_run + for name in ("ISSUE_OPENER_TOKEN", "GITHUB_TOKEN"): + if not os.environ.get(name): + parser.error(f"{name} is not set") + + GH = Github(auth=Auth.Token(os.environ["ISSUE_OPENER_TOKEN"])) + # An unusable token (usually expired) fails the run, which the workflow turns + # into an issue; report_errors only covers projects we could not reach. + LOGIN = GH.get_user().login + print(f"Acting as {LOGIN}") + + names = list_packages(read_ignored(IGNORE_FILE)) + + now = datetime.now(timezone.utc) + # Most of the runtime is the ~5 read-only lookups each package needs; writes + # below stay serial. + with ThreadPoolExecutor(max_workers=4) as pool: + packages = list(pool.map(resolve, names)) + + # Several packages can be built from one repository; report them together. + by_repo = defaultdict(list) + for package in packages: + if package.repo is not None: + by_repo[package.repo.full_name].append(package) + for group in by_repo.values(): + handle_repo(group[0].repo, group, now) + + write_summary(packages, now) + errors = [package.error for package in packages if package.error] + if errors: + report_errors(errors) + return 0 + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/tools/check_stale_wheels.py.lock b/tools/check_stale_wheels.py.lock new file mode 100644 index 0000000..484d6f7 --- /dev/null +++ b/tools/check_stale_wheels.py.lock @@ -0,0 +1,366 @@ +version = 1 +revision = 3 +requires-python = ">=3.11" + +[options] +exclude-newer = "0001-01-01T00:00:00Z" # This has no effect and is included for backwards compatibility when using relative exclude-newer values. 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b2fd76cd72102e03eac9a16699d68f1c22fcb887 Mon Sep 17 00:00:00 2001 From: Eric Larson Date: Thu, 13 Aug 2026 11:44:10 -0500 Subject: [PATCH 2/6] FIX: Refactor existing action and DRY --- .github/workflows/ci.yml | 46 ++++++++++++++++++++++++++++ .github/workflows/keep-alive.yml | 9 ++++++ .github/workflows/remove-wheels.yml | 9 ++++++ .github/workflows/report-failure.yml | 42 +++++++++++++++++++++++++ .github/workflows/stale-wheels.yml | 28 +++++------------ 5 files changed, 114 insertions(+), 20 deletions(-) create mode 100644 .github/workflows/report-failure.yml diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 63e6905..1e1f90a 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -35,6 +35,12 @@ jobs: name: "test upload via action" runs-on: ubuntu-latest if: github.repository == 'scientific-python/upload-nightly-action' + # Pull requests from forks and from Dependabot are not given secrets, so there + # they check that the action refuses to run rather than really uploading + env: + HAS_TOKEN: ${{ secrets.UPLOAD_TOKEN != '' }} + outputs: + uploaded: ${{ steps.record.outputs.uploaded }} steps: - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1 @@ -63,19 +69,41 @@ jobs: - name: List contents of wheel run: python -m zipfile --list dist/test_package-*.whl + - name: Test that an upload without a token is refused + id: no_token + if: env.HAS_TOKEN != 'true' + continue-on-error: true + uses: ./_action_path/ + with: + artifacts_path: dist + anaconda_nightly_upload_token: '' + + - name: Check that the upload was refused + if: env.HAS_TOKEN != 'true' + env: + OUTCOME: ${{ steps.no_token.outcome }} + run: | + if [ "${OUTCOME}" != "failure" ]; then + echo "::error::the action did not refuse to upload without a token" + exit 1 + fi + - name: Test upload + if: env.HAS_TOKEN == 'true' uses: ./_action_path/ with: artifacts_path: dist anaconda_nightly_upload_token: ${{ secrets.UPLOAD_TOKEN }} - name: Test upload that forces removal first + if: env.HAS_TOKEN == 'true' uses: ./_action_path/ with: artifacts_path: dist anaconda_nightly_upload_token: ${{ secrets.UPLOAD_TOKEN }} - name: Build v0.0.2 wheel and sdist + if: env.HAS_TOKEN == 'true' run: | # Bump version to avoid wheel name conflicts sed -i 's/0.0.1/0.0.2/g' _action_path/tests/test_package/pyproject.toml @@ -83,6 +111,7 @@ jobs: uv tool run --from build pyproject-build --installer=uv --outdir ./dist _action_path/tests/test_package - name: Test upload with non-main label + if: env.HAS_TOKEN == 'true' uses: ./_action_path/ with: artifacts_path: dist @@ -90,6 +119,7 @@ jobs: anaconda_nightly_upload_labels: test - name: Build v0.0.3 wheel and sdist + if: env.HAS_TOKEN == 'true' run: | # Bump version to avoid wheel name conflicts sed -i 's/0.0.2/0.0.3/g' _action_path/tests/test_package/pyproject.toml @@ -97,15 +127,22 @@ jobs: uv tool run --from build pyproject-build --installer=uv --outdir ./dist _action_path/tests/test_package - name: Test upload with multiple labels + if: env.HAS_TOKEN == 'true' uses: ./_action_path/ with: artifacts_path: dist anaconda_nightly_upload_token: ${{ secrets.UPLOAD_TOKEN }} anaconda_nightly_upload_labels: dev,test + - name: Record whether anything was uploaded + id: record + run: echo "uploaded=${HAS_TOKEN}" | tee -a "${GITHUB_OUTPUT}" + cleanup: runs-on: ubuntu-latest needs: [test] + # Nothing to clean up when the uploads were skipped for lack of a token + if: needs.test.outputs.uploaded == 'true' # Set required workflow secrets in the environment for additional security # https://github.com/scientific-python/upload-nightly-action/settings/environments environment: @@ -123,3 +160,12 @@ jobs: anaconda --token ${{ secrets.ANACONDA_TOKEN }} remove \ --force \ "scientific-python-nightly-wheels/test-package" + + report-failure: + needs: [test-stale-wheels, test, cleanup] + if: failure() && github.event_name == 'schedule' + permissions: + issues: write + uses: ./.github/workflows/report-failure.yml + with: + title: 'The scheduled CI run is failing' diff --git a/.github/workflows/keep-alive.yml b/.github/workflows/keep-alive.yml index 9704f6e..e30d7e6 100644 --- a/.github/workflows/keep-alive.yml +++ b/.github/workflows/keep-alive.yml @@ -36,3 +36,12 @@ jobs: user_name: 'github-actions[bot]' user_email: 'github-actions[bot]@users.noreply.github.com' commit_message: Keep repo GitHub Actions alive + + report-failure: + needs: [deploy] + if: failure() && github.event_name == 'schedule' + permissions: + issues: write + uses: ./.github/workflows/report-failure.yml + with: + title: 'The workflow keep-alive is failing' diff --git a/.github/workflows/remove-wheels.yml b/.github/workflows/remove-wheels.yml index 00af0f7..be6fb6f 100644 --- a/.github/workflows/remove-wheels.yml +++ b/.github/workflows/remove-wheels.yml @@ -109,3 +109,12 @@ jobs: done fi + + report-failure: + needs: [remove] + if: failure() && github.event_name == 'schedule' + permissions: + issues: write + uses: ./.github/workflows/report-failure.yml + with: + title: 'The old wheel cleanup is failing' diff --git a/.github/workflows/report-failure.yml b/.github/workflows/report-failure.yml new file mode 100644 index 0000000..d77ce98 --- /dev/null +++ b/.github/workflows/report-failure.yml @@ -0,0 +1,42 @@ +name: Report a failing workflow + +# Called by the scheduled workflows in this repository when they fail. A cron job +# that quietly stops working can go unnoticed for months, which is the very thing +# this repository nags other projects about. + +on: + workflow_call: + inputs: + title: + description: 'Title of the issue to open, and to reuse while it stays open' + required: true + type: string + +jobs: + report: + + runs-on: ubuntu-latest + permissions: + issues: write + + steps: + - name: Open or update an issue + env: + GH_TOKEN: ${{ github.token }} + TITLE: ${{ inputs.title }} + RUN_URL: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} + run: | + body="\`${GITHUB_WORKFLOW}\` failed, most recently in [this run](${RUN_URL}). + + Until it is fixed, whatever that workflow keeps an eye on is unattended." + + number=$(gh issue list --repo "${GITHUB_REPOSITORY}" --state open --json number,title \ + --jq 'map(select(.title == env.TITLE)) | .[0].number // ""') + + # Rewrite rather than comment, so a workflow that fails every day does not + # collect a comment a day + if [ -n "${number}" ]; then + gh issue edit "${number}" --repo "${GITHUB_REPOSITORY}" --body "${body}" + else + gh issue create --repo "${GITHUB_REPOSITORY}" --title "${TITLE}" --body "${body}" + fi diff --git a/.github/workflows/stale-wheels.yml b/.github/workflows/stale-wheels.yml index e89587f..7d5761d 100644 --- a/.github/workflows/stale-wheels.yml +++ b/.github/workflows/stale-wheels.yml @@ -39,23 +39,11 @@ jobs: run: | uv run --frozen tools/check_stale_wheels.py ${{ inputs.dry_run && '--dry-run' || '' }} - # A scheduled job that quietly stops working is exactly the failure mode this - # workflow exists to prevent, so make it noisy about itself too. - - name: Report that this workflow failed - if: failure() - env: - GH_TOKEN: ${{ secrets.GITHUB_TOKEN }} - TITLE: The stale nightly wheel check is failing - RUN_URL: ${{ github.server_url }}/${{ github.repository }}/actions/runs/${{ github.run_id }} - run: | - body="[This run](${RUN_URL}) of \`${GITHUB_WORKFLOW}\` failed, so projects whose nightly - wheels are about to be removed from the channel are no longer being notified." - - number=$(gh issue list --repo "${GITHUB_REPOSITORY}" --state open --json number,title \ - --jq 'map(select(.title == env.TITLE)) | .[0].number // ""') - - if [ -n "${number}" ]; then - gh issue comment "${number}" --repo "${GITHUB_REPOSITORY}" --body "${body}" - else - gh issue create --repo "${GITHUB_REPOSITORY}" --title "${TITLE}" --body "${body}" - fi + report-failure: + needs: [report] + if: failure() && github.event_name == 'schedule' + permissions: + issues: write + uses: ./.github/workflows/report-failure.yml + with: + title: 'The stale nightly wheel check is failing' From 55a2560b15ec173892e14cad6394b4662cdf7879 Mon Sep 17 00:00:00 2001 From: Eric Larson Date: Thu, 13 Aug 2026 11:49:38 -0500 Subject: [PATCH 3/6] Add agents MDs --- AGENTS.md | 59 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ CLAUDE.md | 1 + 2 files changed, 60 insertions(+) create mode 100644 AGENTS.md create mode 100644 CLAUDE.md diff --git a/AGENTS.md b/AGENTS.md new file mode 100644 index 0000000..7f1c515 --- /dev/null +++ b/AGENTS.md @@ -0,0 +1,59 @@ +# Notes for agents + +Guidance for automated contributors working in this repository. +Written for someone who can read the code but has no way to know the conventions or the reasoning behind them. + +## What is here + +`action.yml` and `upload_wheels.sh` are the published action itself, which projects call from their own workflows to upload nightly wheels. +Everything else exists to look after the [`scientific-python-nightly-wheels`](https://anaconda.org/scientific-python-nightly-wheels) channel those uploads land on. + +`.github/workflows/remove-wheels.yml` deletes wheels beyond the retention policy, daily at 01:23 UTC. +`tools/check_stale_wheels.py` warns projects before that deletion strands them, daily at 00:23 UTC. +The hour between the two is deliberate: a package must be flagged before it can be deleted, and a fully deleted package disappears from the channel listing where we would no longer see it at all. + +`.github/workflows/report-failure.yml` is a reusable workflow every scheduled workflow calls when it fails. +This repository nags other projects about silently broken automation, so its own cron jobs must not fail quietly. +It is called as a job rather than used as a composite action because `ci.yml` checks out to `_action_path` and `remove-wheels.yml` does not check out at all. + +## Conventions + +Pin third-party actions to a full commit SHA with a `# vX.Y.Z` comment; Dependabot updates them monthly as a single group. + +Python scripts declare their dependencies in a PEP 723 header with a committed `.lock` beside them, and run under `uv run --frozen`. +Refresh one with `uv lock --script --upgrade`, because Dependabot does not track these lock files. +This matches `scientific-python/issue-from-pytest-log-action`, which is worth reading for the house style. + +Pin versions exactly, as `pixi.toml` does, and keep the `exclude-newer` windows in place — they exist to surface security issues rather than to chase releases. + +Format Python with `ruff format --line-length 100`; there is no ruff configuration in the repository yet, so pass the length explicitly. + +## Things that will catch you out + +Pull requests from forks *and* from Dependabot receive no secrets, so a job keyed on `github.event.pull_request.head.repo.fork` still breaks for Dependabot. +Gate on the secret instead, as `ci.yml` does with `HAS_TOKEN: ${{ secrets.UPLOAD_TOKEN != '' }}`, and have the tokenless path assert the action refuses to upload. + +A called workflow's token is capped by the calling job's, so a job that calls `report-failure.yml` must itself declare `permissions: issues: write`. + +The anaconda.org API's `latest_version` is not the most recently uploaded version, because nightly version strings do not sort consistently across projects. +Take the maximum `upload_time` across every version instead. + +That API carries no repository URL for these packages — `home`, `dev_url`, and `source_git_url` are all null — so `check_stale_wheels.py` resolves the target repository from PyPI `Project-URL` metadata, with `PYPI_MAP` covering the one package that has none. + +PyGithub serializes every request through an internal connection lock, so threading does not speed up the GitHub half of a run. +A full stale wheel check takes about two minutes, which is fine for a daily job. + +## Working on the stale wheel check + +Run it with `ISSUE_OPENER_TOKEN` and `GITHUB_TOKEN` set, and keep `--dry-run` on unless you intend to open issues in other projects' trackers. +Dry runs still authenticate and still read issues; they only skip writes. + +The thresholds are constants at the top of the script rather than command line options, by request: add an option only when something actually needs to vary. +`RETENTION_DAYS` must stay in step with the 30 days in `remove-wheels.yml` and the policy section of `README.md`. + +Tests live in `tests/test_check_stale_wheels.py` and run with `uv run --frozen tests/test_check_stale_wheels.py`. +They stub the network, so they are fast and safe to run anywhere. +Every case in them is a real package whose metadata would break a naive implementation; add to that table rather than replacing it when the resolution logic changes. + +Issues opened in other projects are posted by [@scientific-python-bot](https://github.com/scientific-python-bot) using a classic token with the `public_repo` scope, stored as the `ISSUE_OPENER_TOKEN` secret. +Be conservative with anything that posts outward: those messages arrive unsolicited in other maintainers' inboxes. diff --git a/CLAUDE.md b/CLAUDE.md new file mode 100644 index 0000000..8b7cbf4 --- /dev/null +++ b/CLAUDE.md @@ -0,0 +1 @@ +See [AGENTS.md](AGENTS.md). From ad04c64441c72196645b7919c863025a18bd0202 Mon Sep 17 00:00:00 2001 From: Eric Larson Date: Thu, 13 Aug 2026 20:53:04 -0500 Subject: [PATCH 4/6] FIX: Req not lock --- .github/dependabot.yml | 12 + .github/workflows/ci.yml | 4 +- .github/workflows/stale-wheels.yml | 4 +- AGENTS.md | 10 +- requirements.txt | 11 + tests/test_check_stale_wheels.py | 12 - tests/test_check_stale_wheels.py.lock | 428 -------------------------- tools/check_stale_wheels.py | 11 - tools/check_stale_wheels.py.lock | 366 ---------------------- 9 files changed, 33 insertions(+), 825 deletions(-) create mode 100644 requirements.txt delete mode 100644 tests/test_check_stale_wheels.py.lock delete mode 100644 tools/check_stale_wheels.py.lock diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 452301c..bb8d0fb 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -11,3 +11,15 @@ updates: - "*" labels: - "github-actions" + + # Maintain the pinned dependencies of the Python tools + - package-ecosystem: "pip" + directory: "/" + schedule: + interval: "monthly" + groups: + python: + patterns: + - "*" + labels: + - "chore" diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1e1f90a..c676099 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -26,10 +26,10 @@ jobs: - name: Install the latest version of uv uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: - python-version: '3.13' + python-version: '3.14' - name: Run the tests - run: uv run --frozen tests/test_check_stale_wheels.py + run: uv run --with-requirements requirements.txt tests/test_check_stale_wheels.py test: name: "test upload via action" diff --git a/.github/workflows/stale-wheels.yml b/.github/workflows/stale-wheels.yml index 7d5761d..4e6bfa4 100644 --- a/.github/workflows/stale-wheels.yml +++ b/.github/workflows/stale-wheels.yml @@ -30,14 +30,14 @@ jobs: - name: Install the latest version of uv uses: astral-sh/setup-uv@c771a70e6277c0a99b617c7a806ffedaca235ff9 # v9.0.0 with: - python-version: '3.13' + python-version: '3.14' - name: Check for stale wheels env: ISSUE_OPENER_TOKEN: ${{ secrets.ISSUE_OPENER_TOKEN }} GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} run: | - uv run --frozen tools/check_stale_wheels.py ${{ inputs.dry_run && '--dry-run' || '' }} + uv run --with-requirements requirements.txt tools/check_stale_wheels.py ${{ inputs.dry_run && '--dry-run' || '' }} report-failure: needs: [report] diff --git a/AGENTS.md b/AGENTS.md index 7f1c515..ffb298c 100644 --- a/AGENTS.md +++ b/AGENTS.md @@ -20,11 +20,13 @@ It is called as a job rather than used as a composite action because `ci.yml` ch Pin third-party actions to a full commit SHA with a `# vX.Y.Z` comment; Dependabot updates them monthly as a single group. -Python scripts declare their dependencies in a PEP 723 header with a committed `.lock` beside them, and run under `uv run --frozen`. -Refresh one with `uv lock --script --upgrade`, because Dependabot does not track these lock files. -This matches `scientific-python/issue-from-pytest-log-action`, which is worth reading for the house style. +Run the Python tools with `uv run --with-requirements requirements.txt