diff --git a/src/common_access_model/schema/common_access_model.yaml b/src/common_access_model/schema/common_access_model.yaml index e1f8b69..1e27488 100644 --- a/src/common_access_model/schema/common_access_model.yaml +++ b/src/common_access_model/schema/common_access_model.yaml @@ -35,6 +35,7 @@ prefixes: edam: http://edamontology.org OBI: http://purl.obolibrary.org/obo/OBI_ MS: http://purl.obolibrary.org/obo/MS_ + CHMO: http://purl.obolibrary.org/obo/CHMO_ default_prefix: cam default_range: string diff --git a/src/common_access_model/schema/enums/EnumAssayType.yaml b/src/common_access_model/schema/enums/EnumAssayType.yaml index 30fb73e..8134d8b 100644 --- a/src/common_access_model/schema/enums/EnumAssayType.yaml +++ b/src/common_access_model/schema/enums/EnumAssayType.yaml @@ -13,3 +13,10096 @@ enums: is_direct: false relationship_types: - rdfs:subClassOf + permissible_values: + OBI:0000070: + title: assay + description: assay + meaning: OBI:0000070 + CHMO:0000087: + title: fluorescence microscopy assay + description: Any type of light microscopy assay where the specimen can be + made to fluoresce (emit energy as visible light) by illuminating it with + light of specific wavelengths. These specimens are called fluorophores. + meaning: CHMO:0000087 + CHMO:0000089: + title: confocal fluorescence microscopy assay + description: Microscopy where the specimen can be made to fluoresce (emit + energy as visible light) by scanning a gas (Ar or Kr) laser spot of specific + wavelength over its surface and using a spatial pinhole to eliminate out-of-focus + fluorescence. + meaning: CHMO:0000089 + CHMO:0000102: + title: light microscopy assay + description: Microscopy where the specimen is illuminated with visible light + and a system of lenses is used to produce an image. + meaning: CHMO:0000102 + CHMO:0000701: + title: liquid chromatography-tandem mass spectrometry + description: A method where a sample mixture is first separated by liquid + chromatography before being ionised and characterised by mass-to-charge + ratio and relative abundance using two mass spectrometers in series. + meaning: CHMO:0000701 + OBI:0000117: + title: Bernoulli trial + description: An assay where the output data is a datum with one of two values + denoting success and failure. + meaning: OBI:0000117 + OBI:0000182: + title: NMR 3D molecular structure determination assay + description: A 3D molecular structure determination assay that uses magnetic + properties of atomic nuclei to determine the 3D structure and dynamics of + molecules in the input sample. + meaning: OBI:0000182 + OBI:0000185: + title: imaging assay + description: An assay that produces a picture of an entity. + meaning: OBI:0000185 + OBI:0000201: + title: radioactivity detection + description: An assay that measures the amount of radiation in the radioactive + spectrum (alpha, beta or gamma rays) emitted from an input material. + meaning: OBI:0000201 + OBI:0000288: + title: protein-protein interaction detection assay + description: An assay that determines interactions between proteins, such + as protein-protein binding. + meaning: OBI:0000288 + OBI:0000291: + title: transcription factor binding site assay + description: An assay tthat determines DNA regions specifically recognized + by proteins that function as transcription factors + meaning: OBI:0000291 + OBI:0000366: + title: metabolite profiling assay + description: An assay that detects and identifies chemical entities resulting + from biochemical and cellular metabolism + meaning: OBI:0000366 + OBI:0000418: + title: measuring glucose concentration in blood serum assay + description: An assay that determines the concentration of glucose molecules + in a blood serum sample + meaning: OBI:0000418 + OBI:0000424: + title: transcription profiling assay + description: An assay that determines gene expression and transcription activity + using ribonucleic acids collected from a material entity. + meaning: OBI:0000424 + OBI:0000433: + title: DNA sequence feature detection assay + description: An assay with the objective to determine a sequence feature of + DNA + meaning: OBI:0000433 + OBI:0000435: + title: genotyping assay + description: An assay which generates data about a genotype from a specimen + of genomic DNA. A variety of techniques and instruments can be used to produce + information about sequence variation at particular genomic positions. + meaning: OBI:0000435 + OBI:0000438: + title: DNA sequence variation detection assay + description: An assay that measures changes (expansion, amplification, deletion, + mutation) in the sequence of a DNA molecule. + meaning: OBI:0000438 + OBI:0000443: + title: analyte assay + description: An assay with the objective to capture information about the + presence, concentration, or amount of an analyte in an evaluant. + meaning: OBI:0000443 + OBI:0000445: + title: mass measurement assay + description: An assay that determines the mass of an evaluant + meaning: OBI:0000445 + OBI:0000447: + title: intracellular electrophysiology recording assay + description: An electrophysiology assay where the recording location of the + electrode is intracellular. + meaning: OBI:0000447 + OBI:0000454: + title: extracellular electrophysiology recording assay + description: An electrophysiology assay where the recording location of the + electrode is extracellular. + meaning: OBI:0000454 + OBI:0000470: + title: mass spectrometry assay + description: An assay that identifies the amount and type of material entities + present in a sample by fragmenting the sample and measuring the mass-to-charge + ratio of the resulting particles. + meaning: OBI:0000470 + OBI:0000520: + title: clinical chemistry assay + description: An analyte assay which uses analytical methods to produce measurements + and data on the concentration of chemical parameters (analytes) present + in a specimen collected from an organism in order to determine a phenotype + of that organism. + meaning: OBI:0000520 + OBI:0000537: + title: copy number variation profiling assay + description: An assay that determines lost or amplified genomic regions of + DNA by comparing genomic DNA originating from tissues from the same or different + individuals using specific techniques such as CGH, array CGH, SNP genotyping + meaning: OBI:0000537 + OBI:0000615: + title: protein expression profiling assay + description: An assay that determines protein expression and translation activity + using protein extracts collected from a material entity. + meaning: OBI:0000615 + OBI:0000623: + title: NMR spectroscopy assay + description: An assay that exploits the magnetic properties of certain nuclei + (those with a spin) to resonate when placed in particular magnetic field + conditions. Instruments recording NMR spectrum and sets of analysis can + be used to deduce identity of chemical as well as composition of complex + chemical mixtures. + meaning: OBI:0000623 + OBI:0000626: + title: DNA sequencing assay + description: A sequencing assay which determines information on the sequence + of a DNA molecule. + meaning: OBI:0000626 + OBI:0000630: + title: hematology assay + description: An assay that studies phenotypes of an organism involving its + blood and blood producing organs using a variety of techniques and instruments + meaning: OBI:0000630 + OBI:0000634: + title: DNA methylation profiling assay + description: An assay that measures the state of methylation of DNA molecules + using genomic DNA collected from a material entity using a range of techniques + and instrument such as DNA sequencers and often relying on treatment with + bisulfites to ensure cytosine conversion. + meaning: OBI:0000634 + OBI:0000661: + title: enzyme-linked immunosorbent assay + description: An analyte assay where binding of an enzyme linked antibody to + a material entity that is immobilized on solid support is detected utilizing + a chemiluminescent reaction. Depending on the setup, the enzyme-linked antibody + could be binding directly to the analyte, or it serves as a secondary antibody + detecting binding of the primary antibody to the analyte. + meaning: OBI:0000661 + OBI:0000664: + title: BrdU incorporation assay + description: A cell proliferation assay in which cells are cultured in the + presence of BrdU which is incorporated into newly synthesized DNA of replicating + cells (during the S phase of the cell cycle), substituting for thymidine + during DNA replication, which can be quantified by BrdU specific antibodies. + meaning: OBI:0000664 + OBI:0000669: + title: tritiated thymidine incorporation assay + description: A cell proliferation assay in which cells are cultured in the + presence of tritiated thymidine which is incorporated into newly synthesized + DNA of replicating cells (during the S phase of the cell cycle). The radioactivity + of tritiated thymidine in a cell is a proxy for cells that were actively + replicating. + meaning: OBI:0000669 + OBI:0000693: + title: MeDIP-seq assay + description: A DNA methylation profiling assay that identifies methylated + sites in genomic DNA and determines the methylation pattern that affect + gene transcription using immunoprecipitation of methylated genomic DNA, + creation of a library of corresponding DNA fragments (either single or paired-end + fragments) and subsequent sequencing using parallelized sequencing methods. + meaning: OBI:0000693 + OBI:0000695: + title: chain termination sequencing assay + description: A DNA sequencing assay which rely on the use of dideoxynucleotides + used in 4 distinct sequencing reaction on the same DNA sample. The dideoxynucleotides, + once incorporated in the complementary DNA strand being synthesized by the + DNA polymerase prevent any further chain elongation. The newly generated + sequences are resolved on a polyacrylamide gel using electrophoresis and + labels (either fluorochrome or radioactivity) are used to determine the + nucleotide present at a given position + meaning: OBI:0000695 + OBI:0000697: + title: Helicos sequencing assay + description: A DNA sequencing by synthesis assay that identifiies the sequnece + of billions of DNA molecules immobilized to a surface using DNA polymerase + and fluorescently labeled nucleotides added one at a time. The sequencing + process does not require an amplification step and is typically able to + produce reads of 25 base pair length. + meaning: OBI:0000697 + OBI:0000699: + title: survival assessment assay + description: An assay that measures the occurrence of death events in one + or more organisms over time + meaning: OBI:0000699 + OBI:0000705: + title: Edman degradation + description: A sequencing assay in which the amino acid sequence of input + peptides or proteins is determined by iteratively cleaving of the amino-terminal + (N-terminal) residue without disrupting the peptide bonds and identifying + it by e.g. chromatography or electropheresis. + meaning: OBI:0000705 + OBI:0000706: + title: SOLiD sequencing assay + description: A DNA sequencing by ligation assay that identifies sequence information + using primers to hybridize to the P1 adapter sequence within the library + template, fluorescently labeled di-base probes to compete for ligation to + the sequencing primer, multiple cycles of ligation, detection and cleavage + to determine the eventual read length, following a series of ligation cycles, + the extension product is removed and the template is reset with a primer + complementary to the n-1 position for a second round of ligation cycles. + meaning: OBI:0000706 + OBI:0000716: + title: ChIP-seq assay + description: An assay in which chromatin is immunoprecipitated and subsequently + analyzed using a DNA sequencing step to identify which parts of DNA are + part of the isolated chromatin + meaning: OBI:0000716 + OBI:0000721: + title: glucose tolerance test + description: An assay that measures glucose clearance from blood over time + by repeated glucose measurement in blood serum or plasma after the administration + of a glucose bolus in-vivo. This assay can be used to evaluate the severity + of insulin resistance or the efficiency of glucose clearance. + meaning: OBI:0000721 + OBI:0000723: + title: DNA sequencing by ligation assay + description: A DNA sequencing assay that performs chain extension during the + sequencing reaction step using DNA ligase + meaning: OBI:0000723 + OBI:0000724: + title: Solexa sequencing assay + description: A DNA sequencing by synthesis assay that identifies sequence + information using DNA polymerase and reversible terminator, requiring immobilization + of genomic DNA fragments onto a surface and a specific clonal amplification + step known as bridge PCR. Reliance on a reversible terminator allows cycles + of DNA chain extension by DNA polymerase and imaging without the need of + electrophoretic separation of newly synthesized DNA fragment as with Sanger + sequencing. + meaning: OBI:0000724 + OBI:0000730: + title: pyrosequencing assay + description: A DNA sequencing by synthesis assay which sequences a single + strand of DNA by synthesizing the complementary strand along it, one base + pair at a time, and detecting which base was actually added at each step. + The template DNA is immobilized, and solutions of A, C, G, and T nucleotides + are added and removed after the reaction, sequentially. Light is produced + only when the nucleotide solution complements the first unpaired base of + the template. The sequence of solutions which produce chemiluminescent signals + allows the determination of the sequence of the template. ssDNA template + is hybridized to a sequencing primer and incubated with the enzymes DNA + polymerase, ATP sulfurylase, luciferase and apyrase, and with the substrates + adenosine 5-prime phosphosulfate (APS) and luciferin. + meaning: OBI:0000730 + OBI:0000734: + title: DNA sequencing by synthesis assay + description: A DNA sequencing assay that relies on DNA polymerase activity + to perform chain extension during the sequencing reaction step. + meaning: OBI:0000734 + OBI:0000743: + title: immune response assay + description: An assay that determines information about an immune response + meaning: OBI:0000743 + OBI:0000748: + title: bisulfite sequencing assay + description: A DNA methylation profiling assay which determines the methylation + status of genomic DNA using DNA sequencing techniques preceded by a bisulfite + based chemical modification of genomic DNA at CpG island location. + meaning: OBI:0000748 + OBI:0000787: + title: human antithrombin-III in blood assay + description: An assay that measures the amount of antithrombin III in blood. + meaning: OBI:0000787 + OBI:0000802: + title: prothrombin time assay + description: An assay that measures the prothrombin ratio, which is the prothrombin + time for a patient, divided by the result for control plasma. Most commonly + the test is preformed using blood plasma. Blood is drawn into a test tube + containing liquid citrate, which acts as an anticoagulant. An excess of + calcium is added to enable the blood to clot again.Tissue factor (also known + as factor III or thromboplastin) is added, and the time the sample takes + to clot is measured optically as the prothrombin time, which is compared + to a control sample. + meaning: OBI:0000802 + OBI:0000805: + title: antithrombin-III berichrome assay + description: An antithrombin-III (AT-III) assay in which exogenous bovine + thrombin and heparin are added to test plasma to form a thrombin-heparin-AT + complex. The residual thrombin not bound then hydrolyzes the p-nitroalanine + substrate to produce a yellow color, which is read at 405 nm. The intensity + of color produced is inversely proportional to the AT present. A calibration + is done with standard human plasma reagent and results for a given specimen + are reported as a percentage relative to the standard + meaning: OBI:0000805 + OBI:0000808: + title: spectrolyse heparin antifactor-Xa assay + description: An assay that quantitatively measures heparin in human plasma + using Factor Xa and Antithrombin III in excess, where the rate of Factor + Xa inhibition is directly proportional to the heparin concentration. The + residual Factor Xa activity, measured with a Factor Xa-specific chromogenic + substrate, is inversely proportional to the heparin concentration. + meaning: OBI:0000808 + OBI:0000812: + title: measuring neural activity in the caudate nucleus assay + description: An assay that measures neural activity in the caudate nucleus + meaning: OBI:0000812 + OBI:0000820: + title: activated partial thromboplastin time assay + description: An assay that evaluates blood coagulation by measuring the time + required for the appearance of fibrin strands following the mixing blood + or plasma with phospholipid platelet substitute (e.g., crude cephalins, + soybean phosphatides). It is a test of the intrinsic pathway (factors VIII, + IX, XI, and XII) and the common pathway (fibrinogen, prothrombin, factors + V and X) of blood coaguation . It is used as a screening test and to monitor + heparin therapy. + meaning: OBI:0000820 + OBI:0000823: + title: thrombin time assay + description: An assay that measures the time between the addition of the thrombin + and the clot formation in plasma. + meaning: OBI:0000823 + OBI:0000854: + title: western blot assay + description: An analyte assay that detects specific peptides in an input material + by separating it using gel electrophoresis, transfering the separated molecules + to a membrane, and staining them with_ antibodies specific to the analyte + molecules. + meaning: OBI:0000854 + OBI:0000860: + title: northern blot assay + description: An assay that determines the presence of gene transcripts by + hybridizing labeled RNA or DNA probes against messenger RNAs isolated from + tissue or cell cultures, resolved on denaturing gel, transfered by a blotting + procedure to a solid support. Detection of hybridization signals is carried + out by immunofluorescence or radioactivity measurements using photographic + films or digital imaging devices such as Phosphor Imager. + meaning: OBI:0000860 + OBI:0000865: + title: 96-well neutralization assay + description: A serum neutralization of viral infectivity assay which is performed + in a 96-well plate. + meaning: OBI:0000865 + OBI:0000870: + title: single-nucleotide-resolution nucleic acid structure mapping assay + description: An assay that provides information about the secondary structure + of nucleic acids using chemical or enzymatic probing to establish the extent + of base-pairing or solvent accessiblity. + meaning: OBI:0000870 + OBI:0000871: + title: viral hemagglutination assay + description: An assay that quantifies viruses by their hemagglutination activity. + meaning: OBI:0000871 + OBI:0000872: + title: serum neutralization of viral infectivity assay + description: An analyte assay that measures virus-neutralizing abilities of + different sera. Different dilutions of serum are mixed with virus and used + to infect cells. At the lower dilutions, antibodies will block infection, + but at higher dilutions, there will be too few antibodies to have an effect.The + neutralization titer is expressed as the reciprocal of the highest dilution + at which virus infection is blocked. + meaning: OBI:0000872 + OBI:0000874: + title: detection of specific nucleic acid polymers with complementary probes + description: An analyte assay in which a specified input material (the evaluant) + is examined for the presence or quantity of specified nucleic acid polymers, + which are identified based on the use of complementary nucleic acid probes. + meaning: OBI:0000874 + OBI:0000875: + title: viral hemagglutination inhibition assay + description: An assay that measures the ability of an evaluant to inhibit + hemagglutination by a virus. Hemagglutinin is a viral protein which binds + to sialic acid receptors on cells or to erythrocytes, causing the cells + to clump. Loss of clumping indicates that the evaluant blocks binding of + hemagglutinin to sialic acid receptors. + meaning: OBI:0000875 + OBI:0000882: + title: cell-cell killing assay + description: A cytometry assay that monitors a cell population to track how + many are killed by other cells. + meaning: OBI:0000882 + OBI:0000883: + title: in vivo cell killing assay + description: A cell killing assay that measures if and how many target cells + are killed within an organism. + meaning: OBI:0000883 + OBI:0000891: + title: cell proliferation assay + description: A cytometry assay which measures the degreee to which input cells + are replicating. + meaning: OBI:0000891 + OBI:0000892: + title: Southern blot assay + description: An analyte assay that detects the presence of a specific sequence + in a DNA sample, which has been digested by restriction enzymes, resolved + by gel electrophoresis, and blotted to a solid support, followed by hybridization + of a probe raised against a specific sequence and detected with fluorescence + or radioactivity. + meaning: OBI:0000892 + OBI:0000893: + title: real time polymerase chain reaction assay + description: An assay, based on the PCR, that amplifies and simultaneously + quantifies a specific DNA molecule based on the use of complementary probes/primers. + It enables both detection and quantification (as absolute number of copies + or relative amount when normalized to DNA input or additional normalizing + genes) of one or more specific sequences in a DNA sample. + meaning: OBI:0000893 + OBI:0000897: + title: DEPC structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay which determines nucleic acid secondary structure at a nucleotide + resolution scale using DEPC as reagent and chemical probe + meaning: OBI:0000897 + OBI:0000903: + title: in vitro cell killing assay + description: A cell killing assay that measures if and how many target cells + are actively killed by other cells in a cell culture. + meaning: OBI:0000903 + OBI:0000904: + title: reporter cell line analyte detection bioassay + description: An analyte assay in which a cell line whose growth is known to + be affected by the presence of a specific type of material (the anlyte) + is cultured in the presence of an input material (the evaluant) in order + to detect presence of the analyte in the evaluant. + meaning: OBI:0000904 + OBI:0000910: + title: radio immuno assay + description: An assay in which a radioactive labeled antigen or antibody is + used to determine the interaction between an antigen and its receptor. This + can be used to detect the presence of an antigen of interest in an input + sample or determine the specificity of an input antibody. + meaning: OBI:0000910 + OBI:0000911: + title: real time reverse-transcription polymerase chain reaction assay + description: An assay that uses a reverse transcription step (an RNA strand + is reverse transcribed into its DNA complement using the enzyme reverse + transcriptase) before a PCR assay. + meaning: OBI:0000911 + OBI:0000912: + title: X-ray crystallography 3D molecular structure determination assay + description: A 3D molecular structure determination assay in which the diffraction + of pattern of X-ray beams in a crystal of purified material entities is + used to resolve the 3-dimensional structure of the material entity of interest. + meaning: OBI:0000912 + OBI:0000913: + title: promoter activity detection by reporter gene assay + description: An assay in which the activity of a promoter in a cell is monitored + by using a reporter gene that was inserted in a genomic location under control + of the promoter and whose expression can be easily detected based on qualities + or functions of the gene. + meaning: OBI:0000913 + OBI:0000916: + title: flow cytometry assay + description: A cytometry assay in which an input cell population is put in + solution, is passed by a laser, and optical sensors are used to detect scattering + of the laser light and/or fluorescence of specific markers to count and + characterize the particles in solution. + meaning: OBI:0000916 + OBI:0000920: + title: cytometric bead array assay + description: An analyte assay in which a series of beads coated with antibodies, + antigens, or other small molecules are used to detect an analyte of interest. + meaning: OBI:0000920 + OBI:0000923: + title: surface plasmon resonance binding assay + description: A binding assay that uses the detection of electromagnetic waves + in a surface to detect material entities adsorbed to the surface, which + change the local optical index of refraction. + meaning: OBI:0000923 + OBI:0000944: + title: handedness assay + description: An assay that measures the unequal distribution of fine motor + skill between the left and right hands typically in human subjects by means + of some questionnaire and scoring procedure. + meaning: OBI:0000944 + OBI:0000957: + title: self reported handedness assessment + description: An assay where a person makes a statement that indicates what + handedness he has from a choice of different categories. + meaning: OBI:0000957 + OBI:0000964: + title: in live cell assay + description: An assay in which a measurement is made by observing entities + located in a live cell. + meaning: OBI:0000964 + OBI:0000966: + title: in live organism assay + description: An assay in which a measurement is made by observing entities + located in an organism. + meaning: OBI:0000966 + OBI:0000975: + title: cell-cell binding detection by flow cytometry assay + description: A binding assay which uses a flow cytometer to detect pairs of + cells that are bound to each other by staining them with different fluorescent + labels. + meaning: OBI:0000975 + OBI:0000978: + title: in container assay + description: An assay in which a measurement is made by observing entities + located in a container. + meaning: OBI:0000978 + OBI:0001001: + title: Edinburgh handedness assay + description: An assay that uses a set of questions (the Edinburgh Handedness + inventory) to generate a score that can be used to assess the dominance + of a person's right or left hand in everyday activities. The inventory can + be used by an observer assessing the person, or by a person self-reporting + hand use. The latter method tends to be less reliable due to a person over-attributing + tasks to the dominant hand. + meaning: OBI:0001001 + OBI:0001005: + title: RNASE CL3 structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNAse CL3 as reagent and enzymatic probe. + meaning: OBI:0001005 + OBI:0001006: + title: CMCT structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay which uses CMCT as reagent and chemical probe to generate data and + information at nucleotide resolution scale contributing to the determination + of nucleic acid secondary structure + meaning: OBI:0001006 + OBI:0001008: + title: MPE-Fe(II) structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using Fe-MP as reagent and chemical probe. + meaning: OBI:0001008 + OBI:0001011: + title: ENU structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines the secondary structure of a nucleic acid at the nucleotide + resolution scale which uses ENU as reagent and chemical probe + meaning: OBI:0001011 + OBI:0001012: + title: RNASE V1 structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNAse V1 as reagent and enzymatic probe + meaning: OBI:0001012 + OBI:0001013: + title: kethoxal structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at nucleotide resolution + scale using kethoxal as reagent and chemical probe + meaning: OBI:0001013 + OBI:0001014: + title: single-nucleotide-resolution nucleic acid structure mapping assay using + enzymatic probing + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines structural information about the RNA species under + study using proteins acting as enzymatic probes. + meaning: OBI:0001014 + OBI:0001015: + title: DMS structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay which determins nucleic acid secondary structure at a nucleotide resolution + scale using DMS as reagent and chemical probe + meaning: OBI:0001015 + OBI:0001016: + title: DNASE 1 structure mapping assay + description: A single-nucleotide-resolution deoxyribonucleic acid structure + mapping assay which uses DNAse 1 as reagent and enzymatic probe to generate + data and information at nucleotide resolution scale contributing to the + determination of nucleic acid secondary structure + meaning: OBI:0001016 + OBI:0001017: + title: single-nucleotide-resolution nucleic acid structure mapping assay using + chemical probing + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines structural information about the RNA species under + study using small chemical compounds acting as chemical probes. + meaning: OBI:0001017 + OBI:0001018: + title: Rhodium DNA structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using Rhodium as reagent and chemical probe. + meaning: OBI:0001018 + OBI:0001019: + title: RNA ADA I RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNA adenosine deaminase I as reagent and enzymatic probe. + meaning: OBI:0001019 + OBI:0001020: + title: Lead structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at nucleotide resolution + scale using lead as reagent and chemical probe + meaning: OBI:0001020 + OBI:0001021: + title: RNASE T2 structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNAse T2 as reagent and enzymatic probe + meaning: OBI:0001021 + OBI:0001022: + title: gene dosage assay + description: An assay that measures changes in phenotype due to increased + or decreased dosage of a single allele of a gene. + meaning: OBI:0001022 + OBI:0001023: + title: Fe-BABE RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic secondary structure at a nucleotide resolution + scale using Fe-BABE as reagent and chemical probe. + meaning: OBI:0001023 + OBI:0001024: + title: RNASE U2 structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using RNAase U2 as reagent and enzymatic probe + meaning: OBI:0001024 + OBI:0001025: + title: binding constant determination assay + description: A binding assay where the specified output is a binding constant + meaning: OBI:0001025 + OBI:0001026: + title: NMIA RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using NMIA as reagent and chemical probe + meaning: OBI:0001026 + OBI:0001027: + title: Terbium RNA structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using Terbium as reagent and chemical probe + meaning: OBI:0001027 + OBI:0001029: + title: OH-radical structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay hat determines nucleic acid secondary structure at a nucleotide resolution + scale using hydroxyl radical as reagent and chemical probe + meaning: OBI:0001029 + OBI:0001030: + title: RNASE T1 structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale uses RNAse T1 as reagent and enzymatic probe. + meaning: OBI:0001030 + OBI:0001035: + title: Nuclease S1 structure mapping assay + description: A single-nucleotide-resolution deoxyribonucleic acid structure + mapping assay that determines nucleic acid secondary structure at a nucleotide + resolution scale using DNAse 1 as reagent and enzymatic probe. + meaning: OBI:0001035 + OBI:0001038: + title: Ruthenium structure mapping assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that determines nucleic acid secondary structure at a nucleotide resolution + scale using Rhutenium as reagent and chemical probe + meaning: OBI:0001038 + OBI:0001039: + title: inline probing RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at nucleotide resolution + scale using intromolecular reactivity + meaning: OBI:0001039 + OBI:0001145: + title: 3D structure determination of bound molecular complex assay + description: A 3D molecular structure determination assay in which a complex + of 2 or more molecular enties is characterized which provides information + on their binding configuration. + meaning: OBI:0001145 + OBI:0001146: + title: binding assay + description: An assay with the objective to characterize the disposition of + two or more material entities to form a complex. + meaning: OBI:0001146 + OBI:0001158: + title: age determination assay + description: An assay that determines the duration of part of the life of + an organism, where the initial time point is the beginning of some transitional + state (such as birth or when planted). + meaning: OBI:0001158 + OBI:0001170: + title: reverse transcription polymerase chain reaction assay + description: An assay that determines the concentration of RNA in a sample + in which an RNA strand is first reverse transcribed into its DNA complement + (complementary DNA, or cDNA) using the enzyme reverse transcriptase, and + the resulting cDNA is amplified using traditional or real-time PCR. + meaning: OBI:0001170 + OBI:0001177: + title: RNA sequencing assay + description: An assay that determines the sequence of an RNA molecule. + meaning: OBI:0001177 + OBI:0001178: + title: efficacy of epitope intervention experiment + description: An assay that tests if inducing an epitope specific immune response + in an organism has an effect, such as the ability to prevent, treat or exacerbate + diseases in the organism. + meaning: OBI:0001178 + OBI:0001179: + title: epitope protection from infectious challenge experiment + description: An epitope protection experiment in which the ability of the + epitope to protect the host from an infection is assessed. + meaning: OBI:0001179 + OBI:0001183: + title: epitope protection from tumor challenge experiment + description: An epitope protection experiment in which the ability of the + epitope to protect the host from developing tumors is assessed. + meaning: OBI:0001183 + OBI:0001184: + title: epitope protection experiment + description: An efficacy of epitope intervention experiment that tests the + efficacy of inducing an immune epitope response to prevent disease in a + host. + meaning: OBI:0001184 + OBI:0001186: + title: epitope protection from infectious challenge experiment based on pathogen + burden + description: An epitope protection from infectious challenge experiment in + which the readout is a reduction in the presence of pathogens in the host + compared to controls. + meaning: OBI:0001186 + OBI:0001187: + title: infectious agent detection assay + description: An assay that measures the presence or amount of an infectious + agent in an evaluant + meaning: OBI:0001187 + OBI:0001188: + title: epitope disease exacerbation experiment + description: An efficacy of epitope intervention experiment that tests the + ability of inducing an epitope immune response to increase the severity + of an existing disease in the host. + meaning: OBI:0001188 + OBI:0001189: + title: epitope protection experiment based on survival + description: An epitope protection experiment that determines the success + of the epitope intervention based on increased survival of the host. + meaning: OBI:0001189 + OBI:0001190: + title: epitope treatment experiment + description: An epitope intervention experiment that tests the ability of + inducing an epitope immune response to treat an existing disease in the + host. + meaning: OBI:0001190 + OBI:0001194: + title: ELISPOT assay measuring epitope specific transforming growth factor-beta + production by T cells + description: An enzyme-linked immunospot assay that detects transforming growth + factor-beta production by T cells. + meaning: OBI:0001194 + OBI:0001196: + title: cytometric bead array assay measuring epitope specific IP-10 production + by T cells + description: A cytometric bead array assay that detects IP-10 production by + T cells. + meaning: OBI:0001196 + OBI:0001198: + title: assay measuring epitope specific interleukin-27 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-27 production by T cells. + meaning: OBI:0001198 + OBI:0001203: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific transforming growth factor-beta production by + T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects transforming growth factor-beta production by T cells. + meaning: OBI:0001203 + OBI:0001206: + title: ELISPOT assay measuring epitope specific granulocyte macrophage colony-stimulating + factor production by T cells + description: An enzyme-linked immunospot assay that detects granulocyte macrophage + colony stimulating factor production by T cells. + meaning: OBI:0001206 + OBI:0001209: + title: assay measuring epitope specific interleukin-10 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-10 production by T cells. + meaning: OBI:0001209 + OBI:0001210: + title: cytometric bead array assay measuring epitope specific transforming + growth factor-beta production by T cells + description: A cytometric bead array assay that detects transforming growth + factor-beta production by T cells + meaning: OBI:0001210 + OBI:0001215: + title: intracellular material detection assay measuring epitope specific perforin + release + description: A flow cytometry assay that detects epitope specific perforin + release by T cells. + meaning: OBI:0001215 + OBI:0001216: + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-2 production by T cells + description: A reporter cell line analyte detection bioassay that detects + interleukin-2 production by T cells. + meaning: OBI:0001216 + OBI:0001217: + title: assay measuring epitope specific interleukin-22 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-22 production by T cells. + meaning: OBI:0001217 + OBI:0001218: + title: assay measuring epitope specific interleukin-8 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-8 production by T cells. + meaning: OBI:0001218 + OBI:0001220: + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-10 production by T cells + description: A reporter cell line analyte detection bioassay that detects + interleukin-10 production by T cells. + meaning: OBI:0001220 + OBI:0001221: + title: ChIP-chip by SNP array assay + description: A ChIP-ChIP assay in which immunoprecipitated chromatin is run + on a SNP array to detect polymorphism specific DNA elements in the isolated + chromatin + meaning: OBI:0001221 + OBI:0001222: + title: ELISA measuring epitope specific RANTES production by T cells + description: An enzyme-linked immunosorbent assay that detects RANTES production + by T cells. + meaning: OBI:0001222 + OBI:0001223: + title: cytometric bead array assay measuring epitope specific interleukin-1 + beta production by T cells + description: A cytometric bead array assay that detects interleukin-1 beta + production by T cells. + meaning: OBI:0001223 + OBI:0001227: + title: ELISPOT assay measuring epitope specific interleukin-6 production by + T cells + description: An enzyme-linked immunospot assay that detects interleukin-6 + production by T cells + meaning: OBI:0001227 + OBI:0001228: + title: in vivo assay measuring epitope specific helper T cell enhancement + of a B cell mediated immune response + description: A T cell epitope specific helper activity assay that detects + the ability of a T cell epitope to enhance an antibody response. + meaning: OBI:0001228 + OBI:0001229: + title: plasmon resonance assay measuring the dissociation constant [KD] of + a T cell epitope:MHC:TCR complex + description: A surface plasmon resonance binding assay that measures the dissociation + constant [KD] of an epitope:MHC complex binding with a T cell receptor. + meaning: OBI:0001229 + OBI:0001230: + title: assay measuring epitope specific interleukin-5 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-5 production by T cells. + meaning: OBI:0001230 + OBI:0001231: + title: ELISA measuring epitope specific transforming growth factor-beta production + by T cells + description: An enzyme-linked immunosorbent assay that detects transforming + growth factor-beta production by T cells. + meaning: OBI:0001231 + OBI:0001232: + title: assay measuring epitope specific RANTES production by T cells + description: A T cell epitope specific cytokine production assay that detects + RANTES production by T cells. + meaning: OBI:0001232 + OBI:0001233: + title: assay measuring epitope specific granulocyte macrophage colony stimulating + factor production by T cells + description: A T cell epitope specific cytokine production assay that detects + granulocyte macrophage colony stimulating factor production by T cells. + meaning: OBI:0001233 + OBI:0001235: + title: transcription profiling by tiling array assay + description: A transcription profiling by array assay that uses a tiling path + array. + meaning: OBI:0001235 + OBI:0001236: + title: ELISA measuring epitope specific interleukin-22 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-22 + production by T cells. + meaning: OBI:0001236 + OBI:0001237: + title: assay measuring epitope specific interleukin-21 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-21 production by T cells. + meaning: OBI:0001237 + OBI:0001238: + title: ELISA measuring epitope specific interleukin-9 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-9 + production by T cells. + meaning: OBI:0001238 + OBI:0001240: + title: intracellular cytokine staining assay measuring epitope specific interleukin-6 + production by T cells + description: A flow cytometry assay that detects interleukin-6 production + by T cells. + meaning: OBI:0001240 + OBI:0001241: + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-4 production by T cells + description: A reporter cell line analyte detection bioassay that detects + interleukin-4 production by T cells. + meaning: OBI:0001241 + OBI:0001242: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific tumor necrosis factor alpha production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects tumor necrosis factor alpha production by T cells. + meaning: OBI:0001242 + OBI:0001243: + title: cytometric bead array assay measuring epitope specific monocyte chemotactic + protein-1 production by T cells + description: A cytometric bead array assay that detects monocyte chemotactic + protein-1 production by T cells. + meaning: OBI:0001243 + OBI:0001244: + title: ELISA measuring epitope specific interleukin-23 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-23 + production by T cells. + meaning: OBI:0001244 + OBI:0001245: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific perforin release + description: A detection of specific nucleic acids with complementary probes + assay that detects epitope specific perforin release by T cells. + meaning: OBI:0001245 + OBI:0001246: + title: ELISA measuring epitope specific tumor necrosis factor superfamily + cytokine production by T cells + description: An enzyme-linked immunosorbent assay that detects tumor necrosis + factor superfamily cytokine production by T cells. + meaning: OBI:0001246 + OBI:0001247: + title: genotyping by high throughput sequencing assay + description: A genotyping assay that uses a high througput sequencer + meaning: OBI:0001247 + OBI:0001248: + title: ChIP-chip assay + description: An assay in which chromatin is immunoprecipitated and subsequently + analyzed using a DNA microarray to identify which parts of DNA are part + of the isolated chromatin + meaning: OBI:0001248 + OBI:0001251: + title: assay measuring epitope specific interleukin-13 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-13 production by T cells. + meaning: OBI:0001251 + OBI:0001253: + title: assay measuring interleukin-9 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-9 production by T cells. + meaning: OBI:0001253 + OBI:0001255: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-5 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-5 production by T cells. + meaning: OBI:0001255 + OBI:0001260: + title: ELISA measuring epitope specific interleukin-3 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-3 + production by T cells. + meaning: OBI:0001260 + OBI:0001261: + title: ELISA measuring epitope specific interleukin-1 alpha production by + T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-1 + alpha production by T cells. + meaning: OBI:0001261 + OBI:0001263: + title: in vivo assay measuring epitope specific helper T cell enhancement + of a T cell mediated immune response + description: A T cell epitope specific helper activity assay that detects + the ability of a T cell epitope to enhance a T cell response. + meaning: OBI:0001263 + OBI:0001264: + title: assay measuring epitope specific transforming growth factor-beta production + by T cells + description: A T cell epitope specific cytokine production assay that detects + transforming growth factor-beta production by T cells. + meaning: OBI:0001264 + OBI:0001266: + title: DNA methylation profiling by high throughput sequencing assay + description: A DNA methylation profiling assay in which the methylation state + of DNA is determined and can be compared between samples using sequencing + based technology + meaning: OBI:0001266 + OBI:0001268: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-12 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-12 production by T cells. + meaning: OBI:0001268 + OBI:0001269: + title: assay measuring epitope specific cytotoxic T cell degranulation + description: A T cell epitope dependent biological activity assay that detects + cytotoxic T cell degranulation. + meaning: OBI:0001269 + OBI:0001270: + title: cell culture analyte detection bioassay measuring epitope specific + transforming growth factor-beta production by T cells + description: A reporter cell line analyte detection bioassay that detects + transforming growth factor-beta production by T cells. + meaning: OBI:0001270 + OBI:0001271: + title: transcription profiling by RNA sequencing assay + description: A type of transcription profiling assay where transcripts are + extracted from a sample, usually (but not always) transformed into cDNA, + and then sequenced. Sequence reads are generally mapped to a reference and + quantified to establish levels of gene transcription. + meaning: OBI:0001271 + OBI:0001272: + title: ELISPOT assay measuring epitope specific tumor necrosis factor superfamily + cytokine production by T cells + description: An enzyme-linked immunospot assay that detects tumor necrosis + factor superfamily cytokine production by T cells. + meaning: OBI:0001272 + OBI:0001273: + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-5 production by T cells + description: A reporter cell line analyte detection bioassay that detects + interleukin-5 production by T cells. + meaning: OBI:0001273 + OBI:0001274: + title: genotyping by array assay + description: A genotyping assay that uses an array + meaning: OBI:0001274 + OBI:0001276: + title: assay measuring epitope specific chemokine (C-C motif) ligand 1 production + by T cells + description: A T cell epitope specific cytokine production assay that detects + production of chemokine (C-C motif) ligand 1 by T cells. + meaning: OBI:0001276 + OBI:0001277: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-2 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-2 production by T cells. + meaning: OBI:0001277 + OBI:0001279: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-22 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-22 production by T cells. + meaning: OBI:0001279 + OBI:0001280: + title: assay measuring epitope specific interleukin-16 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-16 production by T cells. + meaning: OBI:0001280 + OBI:0001281: + title: ELISA measuring epitope specific IP-10 production by T cells + description: An enzyme-linked immunosorbent assay that detects IP-10 production + by T cells. + meaning: OBI:0001281 + OBI:0001282: + title: translation profiling assay + description: An assay in which surface-bound, translationally competent ribosome + complexes are used to generate a translation profile for mRNA, which mRNA + may be a single molecular species, or a combination of species, including + complex mixtures such as those found in the set of mRNAs isolated from a + cell or tissue. One or more components of the surface-bound ribosome complex + may be labeled at specific positions to permit analysis of multiple or single + molecules for determination of ribosomal conformational changes and translation + kinetics. Translation profiles are used as the basis for comparison of an + mRNA or set of mRNA species. The translation profile can be used to determine + such characteristics as kinetics of initiation, kinetic of elongation, identity + of the polypeptide product, and the like. Analysis of translation profiles + may be used to determine differential gene expression, optimization of mRNA + sequences for expression, screening drug candidates for an effect on translation. + meaning: OBI:0001282 + OBI:0001283: + title: ELISA measuring epitope specific interleukin-15 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-15 + production by T cells. + meaning: OBI:0001283 + OBI:0001284: + title: cytometric bead array assay measuring epitope specific interleukin-12 + production by T cells + description: A cytometric bead array assay that detects interleukin-12 production + by T cells. + meaning: OBI:0001284 + OBI:0001288: + title: ELISA measuring epitope specific lymphotoxin A production by T cells + description: An enzyme-linked immunosorbent assay that detects lymphotoxin + A production by T cells. + meaning: OBI:0001288 + OBI:0001289: + title: cytometric bead array assay measuring epitope specific interleukin-5 + production by T cells + description: A cytometric bead array assay that detects interleukin-5 production + by T cells. + meaning: OBI:0001289 + OBI:0001291: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-17 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-17 production by T cells. + meaning: OBI:0001291 + OBI:0001292: + title: assay measuring epitope specific interleukin-15 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-15 production by T cells. + meaning: OBI:0001292 + OBI:0001295: + title: assay measuring epitope specific interleukin-17 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-17 production by T cells. + meaning: OBI:0001295 + OBI:0001296: + title: cytometric bead array assay measuring epitope specific interleukin-17 + production by T cells + description: A cytometric bead array assay that detects interleukin-17 production + by T cells. + meaning: OBI:0001296 + OBI:0001297: + title: cytometric bead array assay measuring epitope specific interleukin-10 + production by T cells + description: A cytometric bead array assay that detects interleukin-10 production + by T cells. + meaning: OBI:0001297 + OBI:0001298: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-21 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-21 production by T cells. + meaning: OBI:0001298 + OBI:0001299: + title: intracellular cytokine staining assay measuring epitope specific interleukin-5 + production by T cells + description: A flow cytometry assay that detects interleukin-5 production + by T cells. + meaning: OBI:0001299 + OBI:0001300: + title: cytometric bead array assay measuring epitope specific interleukin-2 + production by T cells + description: A cytometric bead array assay that detects interleukin-2 production + by T cells. + meaning: OBI:0001300 + OBI:0001301: + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-16 production by T cells + description: A reporter cell line analyte detection bioassay that detects + interleukin-16 production by T cells. + meaning: OBI:0001301 + OBI:0001302: + title: ELISA measuring epitope specific macrophage inflammatory protein-1 + alpha production by T cells + description: An enzyme-linked immunosorbent assay that detects macrophage + inflammatory protein-1 alpha production by T cells. + meaning: OBI:0001302 + OBI:0001303: + title: intracellular cytokine staining assay measuring epitope specific granulocyte + macrophage colony-stimulating factor production by T cells + description: A flow cytometry assay that detects granulocyte macrophage colony + stimulating factor production by T cells. + meaning: OBI:0001303 + OBI:0001304: + title: RNAi profiling by array assay + description: An assay in which double stranded RNA is synthesized with a sequence + complementary to a gene(s) of interest and introduced into a cell or organism, + where it is recognized as exogenous genetic material and activates the RNAi + pathway resulting in knockdown of the transcripts and providing a means + to study downstream changes in gene expression. + meaning: OBI:0001304 + OBI:0001308: + title: assay measuring epitope specific IP-10 production by T cells + description: A T cell epitope specific cytokine production assay that detects + IP-10 production by T cells. + meaning: OBI:0001308 + OBI:0001309: + title: intracellular cytokine staining assay measuring epitope specific interleukin-13 + production by T cells + description: A flow cytometry assay that detects interleukin-13 production + by T cells. + meaning: OBI:0001309 + OBI:0001311: + title: X-ray crystallography assay determining the 3D structure of a T cell + epitope:MHC:TCR complex + description: A X-ray crystallography 3D molecular structure determination + assay that characterizes the 3-dimensional molecular structure of a T cell + epitope:MHC:TCR complex. + meaning: OBI:0001311 + OBI:0001315: + title: ELISA measuring epitope specific chemokine (C-C motif) ligand 1 production + by T cells + description: An enzyme-linked immunosorbent assay that detects chemokine (C-C + motif) ligand 1 production by T cells. + meaning: OBI:0001315 + OBI:0001317: + title: flow cytometry assay measuring cell-cell binding of a T cell epitope:MHC:TCR + complex + description: A flow cytometry assay that measures the cell-cell binding of + an epitope:MHC complex binding with a T cell receptor. + meaning: OBI:0001317 + OBI:0001318: + title: proteomic profiling by array assay + description: An assay that detects proteins in a sample (quantified or otherwise + analyzed), e.g. antibody profiling using an array based technology. + meaning: OBI:0001318 + OBI:0001319: + title: cell culture analyte detection bioassay measuring epitope specific + interferon-gamma production by T cells + description: A reporter cell line analyte detection bioassay that detects + interferon-gamma production by T cells. + meaning: OBI:0001319 + OBI:0001322: + title: ELISPOT assay measuring epitope specific granzyme B release by T cells + description: An enzyme-linked immunospot assay that detects epitope specific + granzyme B release by T cells. + meaning: OBI:0001322 + OBI:0001324: + title: in vivo assay measuring T cell epitope specific tolerance induction + description: An efficacy of T cell epitope intervention experiment that uses + a tolerance induction intervention experiment. + meaning: OBI:0001324 + OBI:0001325: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific RANTES production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects RANTES production by T cells. + meaning: OBI:0001325 + OBI:0001326: + title: cytometric bead array assay measuring epitope specific interleukin-4 + production by T cells + description: A cytometric bead array assay that detects interleukin-4 production + by T cells + meaning: OBI:0001326 + OBI:0001327: + title: assay measuring epitope specific lymphotoxin A production by T cells + description: A T cell epitope specific cytokine production assay that detects + lymphotoxin A production by T cells. + meaning: OBI:0001327 + OBI:0001330: + title: ELISA measuring epitope specific chemokine (C-X-C motif) ligand 9 production + by T cells + description: An enzyme-linked immunosorbent assay that detects chemokine (C-X-C + motif) ligand 9 production by T cells. + meaning: OBI:0001330 + OBI:0001332: + title: DNA methylation profiling by array assay + description: A DNA methylation profiling assay in which the methylation state + of DNA is determined and can be compared between samples using array technology + meaning: OBI:0001332 + OBI:0001333: + title: assay measuring epitope specific macrophage inflammatory protein-1 + alpha production by T cells + description: A T cell epitope specific cytokine production assay that detects + macrophage inflammatory protein-1 alpha production by T cells. + meaning: OBI:0001333 + OBI:0001335: + title: microRNA profiling by array assay + description: An assay that analyses the microRNA component of the transcriptome + using a microRNA array. + meaning: OBI:0001335 + OBI:0001339: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-4 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-4 production by T cells. + meaning: OBI:0001339 + OBI:0001341: + title: cell culture analyte detection bioassay measuring epitope specific + granulocyte macrophage colony-stimulating factor production by T cells + description: A reporter cell line analyte detection bioassay that detects + granulocyte macrophage colony stimulating factor production by T cells. + meaning: OBI:0001341 + OBI:0001342: + title: intracellular cytokine staining assay measuring epitope specific interleukin-21 + production by T cells + description: A flow cytometry assay that detects interleukin-21 production + by T cells. + meaning: OBI:0001342 + OBI:0001343: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific monocyte chemotactic protein-1 production by + T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects monocyte chemotactic protein-1 production by T cells. + meaning: OBI:0001343 + OBI:0001344: + title: ELISA measuring epitope specific monocyte chemotactic protein-1 production + by T cells + description: An enzyme-linked immunosorbent assay that detects monocyte chemotactic + protein-1 production by T cells. + meaning: OBI:0001344 + OBI:0001345: + title: assay measuring epitope specific chemokine (C-C motif) ligand 4 production + by T cells + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 4 production by T cells. + meaning: OBI:0001345 + OBI:0001346: + title: ELISA measuring epitope specific interleukin-21 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-21 + production by T cells. + meaning: OBI:0001346 + OBI:0001348: + title: in vivo skin test assay measuring T cell epitope specific type IV hypersensitivity + description: An efficacy of T cell epitope intervention experiment that detects + epitope specific type IV hypersensitivity. + meaning: OBI:0001348 + OBI:0001349: + title: cytometric bead array assay measuring epitope specific interleukin-13 + production by T cells + description: A cytometric bead array assay that detects interleukin-13 production + by T cells. + meaning: OBI:0001349 + OBI:0001350: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interferon-gamma production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interferon-gamma production by T cells. + meaning: OBI:0001350 + OBI:0001353: + title: cytometric bead array assay measuring epitope specific tumor necrosis + factor alpha production by T cells + description: A cytometric bead array assay that detects tumor necrosis factor + alpha production by T cells. + meaning: OBI:0001353 + OBI:0001354: + title: ELISPOT assay measuring epitope specific interleukin-17 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-17 + production by T cells. + meaning: OBI:0001354 + OBI:0001356: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interferon-beta production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interferon-beta production by T cells. + meaning: OBI:0001356 + OBI:0001357: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific granulocyte macrophage colony-stimulating factor + production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects granulocyte macrophage colony stimulating factor production + by T cells. + meaning: OBI:0001357 + OBI:0001359: + title: ELISA measuring epitope specific interleukin-8 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-8 + production by T cells. + meaning: OBI:0001359 + OBI:0001360: + title: cytometric bead array assay measuring epitope specific interleukin-6 + production by T cells + description: A cytometric bead array assay that detects interleukin-6 production + by T cells. + meaning: OBI:0001360 + OBI:0001361: + title: transcription profiling by RT-PCR assay + description: A transcription profiling assay that uses reverse transcription + PCR (RT-PCR). + meaning: OBI:0001361 + OBI:0001363: + title: assay measuring epitope specific interleukin-23 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-23 production by T cells. + meaning: OBI:0001363 + OBI:0001367: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-10 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-10 production by T cells. + meaning: OBI:0001367 + OBI:0001368: + title: cytometric bead array assay measuring epitope specific tumor necrosis + factor superfamily cytokine production by T cells + description: A cytometric bead array assay that detects tumor necrosis factor + superfamily cytokine production by T cells. + meaning: OBI:0001368 + OBI:0001370: + title: intracellular cytokine staining assay measuring epitope specific chemokine + (C-C motif) ligand 4 production by T cells + description: A flow cytometry assay that detects chemokine (C-C motif) ligand + 4 production by T cells. + meaning: OBI:0001370 + OBI:0001376: + title: intracellular cytokine staining assay measuring epitope specific interleukin-3 + production by T cells + description: A flow cytometry assay that detects interleukin-3 production + by T cells. + meaning: OBI:0001376 + OBI:0001378: + title: ELISA measuring epitope specific chemokine (C-C motif) ligand 4 production + by T cells + description: An enzyme-linked immunosorbent assay that detects chemokine (C-C + motif) ligand 4 production by T cells. + meaning: OBI:0001378 + OBI:0001379: + title: cytometric bead array assay measuring epitope specific interferon-gamma + production by T cells + description: A cytometric bead array assay that detects interferon-gamma production + by T cells. + meaning: OBI:0001379 + OBI:0001380: + title: assay measuring epitope specific interleukin-18 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-18 production by T cells. + meaning: OBI:0001380 + OBI:0001382: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-27 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-27 production by T cells. + meaning: OBI:0001382 + OBI:0001383: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific IP-10 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects IP-10 production by T cells. + meaning: OBI:0001383 + OBI:0001384: + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-3 production by T cells + description: A reporter cell line analyte detection bioassay that detects + interleukin-3 production by T cells. + meaning: OBI:0001384 + OBI:0001385: + title: intracellular cytokine staining assay measuring epitope specific tumor + necrosis factor superfamily cytokine production by T cells + description: A flow cytometry assay that detects tumor necrosis factor superfamily + cytokine production by T cells. + meaning: OBI:0001385 + OBI:0001388: + title: assay measuring epitope specific interleukin-1 alpha production by + T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-1 alpha production by T cells. + meaning: OBI:0001388 + OBI:0001389: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-6 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-6 production by T cells. + meaning: OBI:0001389 + OBI:0001390: + title: assay measuring epitope specific interferon-beta production by T cells + description: A T cell epitope specific cytokine production assay that detects + interferon-beta production by T cells. + meaning: OBI:0001390 + OBI:0001391: + title: assay measuring epitope specific interleukin-12 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-12 production by T cells. + meaning: OBI:0001391 + OBI:0001392: + title: in vivo assay measuring epitope specific T cell killing + description: An in vivo cell killing assay that measures the killing of antigen + presenting cells (APC) by T cells whose TCR recognizes an epitope presented + by the APC. + meaning: OBI:0001392 + OBI:0001393: + title: comparative genomic hybridization by array assay + description: An assay that measures changes in DNA sequence copy number using + a microarray. For example the analysis of LOH in tumor cells vs a non diseased + sample or the comparison of clinical isolated of disease causing bacteria. + meaning: OBI:0001393 + OBI:0001395: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-23 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-23 production by T cells. + meaning: OBI:0001395 + OBI:0001397: + title: cytometric bead array assay measuring epitope specific granulocyte + colony stimulating factor production by T cells + description: A cytometric bead array assay that detects granulocyte colony + stimulating factor production by T cells. + meaning: OBI:0001397 + OBI:0001400: + title: assay measuring epitope specific tumor necrosis factor superfamily + cytokine production by T cells + description: A T cell epitope specific cytokine production assay that detects + tumor necrosis factor superfamily cytokine production by T cells. + meaning: OBI:0001400 + OBI:0001402: + title: promoter activity detection by reporter gene assay measuring epitope + specific interleukin-2 production by T cells + description: A promoter activity detection by reporter gene assay that detects + interleukin-2 production by T cells. + meaning: OBI:0001402 + OBI:0001405: + title: cytometric bead array assay measuring epitope specific macrophage inflammatory + protein-1 alpha production by T cells + description: A cytometric bead array assay that detects macrophage inflammatory + protein-1 alpha production by T cells. + meaning: OBI:0001405 + OBI:0001406: + title: assay measuring epitope specific interleukin-3 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-3 production by T cells. + meaning: OBI:0001406 + OBI:0001407: + title: assay measuring epitope specific T cell activation + description: A T cell epitope dependent biological activity assay that detects + T cell activation. + meaning: OBI:0001407 + OBI:0001412: + title: cytometric bead array assay measuring epitope specific RANTES production + by T cells + description: A cytometric bead array assay that detects RANTES production + by T cells. + meaning: OBI:0001412 + OBI:0001413: + title: cell culture analyte detection bioassay measuring epitope specific + interleukin-6 production by T cells + description: A reporter cell line analyte detection bioassay that detects + interleukin-6 production by T cells. + meaning: OBI:0001413 + OBI:0001414: + title: assay measuring epitope specific interferon-gamma production by T cells + description: A T cell epitope specific cytokine production assay that detects + interferon-gamma production by T cells. + meaning: OBI:0001414 + OBI:0001416: + title: assay measuring epitope specific tumor necrosis factor alpha production + by T cells + description: An assay of epitope specific tumor necrosis factor alpha production + by T cells that detects tumor necrosis factor production. + meaning: OBI:0001416 + OBI:0001419: + title: ChIP-chip by tiling array assay + description: A ChIP-ChIP assay in which immunoprecipitated chromatin is run + on a tiling array that covers stretches of DNA to to detect which elements + in those stretches are present in the isolated chromatin + meaning: OBI:0001419 + OBI:0001423: + title: intracellular material detection measuring epitope specific granzyme + B release by T cells + description: A flow cytometry assay that detects epitope specific granzyme + B release by T cells + meaning: OBI:0001423 + OBI:0001433: + title: radio immuno assay measuring epitope specific interferon-gamma production + by T cells + description: A radio immuno assay that detects interferon-gamma production + by T cells. + meaning: OBI:0001433 + OBI:0001436: + title: assay measuring epitope specific granzyme B release by T cells + description: A T cell epitope specific cytotoxic T cell degranulation assay + that detects granzyme B release by T cells. + meaning: OBI:0001436 + OBI:0001437: + title: intracellular cytokine staining assay measuring epitope specific chemokine + (C-X-C motif) ligand 9 production by T cells + description: A flow cytometry assay that detects chemokine (C-X-C motif) ligand + 9 production by T cells. + meaning: OBI:0001437 + OBI:0001438: + title: ELISA measuring epitope specific macrophage inflammatory protein-1 + gamma production by T cells + description: An enzyme-linked immunosorbent assay that detects macrophage + inflammatory protein-1 gamma production by T cells. + meaning: OBI:0001438 + OBI:0001445: + title: assay measuring epitope specific interleukin-2 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-2 production by T cells. + meaning: OBI:0001445 + OBI:0001449: + title: assay measuring epitope specific interleukin-1 beta production by T + cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-1 beta production by T cells. + meaning: OBI:0001449 + OBI:0001450: + title: assay measuring epitope specific interleukin-4 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-4 production by T cells. + meaning: OBI:0001450 + OBI:0001451: + title: assay measuring epitope specific interleukin-6 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-6 production by T cells. + meaning: OBI:0001451 + OBI:0001452: + title: cell culture analyte detection bioassay measuring epitope specific + tumor necrosis factor alpha production by T cells + description: A reporter cell line analyte detection bioassay that detects + tumor necrosis factor alpha production by T cells. + meaning: OBI:0001452 + OBI:0001453: + title: intracellular cytokine staining assay measuring epitope specific lymphotoxin + A production by T cells + description: A flow cytometry assay that detects lymphotoxin A production + by T cells. + meaning: OBI:0001453 + OBI:0001455: + title: ELISPOT assay measuring epitope specific interleukin-5 production by + T cells + description: An enzyme-linked immunospot assay that detects interleukin-5 + production by T cells. + meaning: OBI:0001455 + OBI:0001456: + title: assay measuring epitope specific macrophage inflammatory protein-1 + gamma production by T cells + description: A T cell epitope specific cytokine production assay that detects + macrophage inflammatory protein-1 gamma production by T cells. + meaning: OBI:0001456 + OBI:0001457: + title: cytometric bead array assay measuring epitope specific interleukin-8 + production by T cells + description: A cytometric bead array assay that detects interleukin-8 production + by T cells. + meaning: OBI:0001457 + OBI:0001459: + title: assay measuring epitope specific chemokine (C-X-C motif) ligand 9 production + by T cells + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-X-C motif) ligand 9 production by T cells. + meaning: OBI:0001459 + OBI:0001461: + title: ELISA measuring epitope specific granzyme B release by T cells + description: An enzyme-linked immunosorbent assay that detects epitope specific + granzyme B release by T cells. + meaning: OBI:0001461 + OBI:0001463: + title: transcription profiling by array assay + description: A transcription profiling assay that uses array technology. + meaning: OBI:0001463 + OBI:0001465: + title: assay measuring epitope specific monocyte chemotactic protein-1 production + by T cells + description: A T cell epitope specific cytokine production assay that detects + monocyte chemotactic protein-1 production by T cells. + meaning: OBI:0001465 + OBI:0001466: + title: intracellular cytokine staining assay measuring epitope specific interleukin-12 + production by T cells + description: A flow cytometry assay that detects interleukin-12 production + by T cells. + meaning: OBI:0001466 + OBI:0001467: + title: in vivo assay measuring T cell epitope specific disease exacerbation + description: An efficacy of T cell epitope intervention experiment that uses + a disease exacerbation in vivo intervention experiment. + meaning: OBI:0001467 + OBI:0001469: + title: monospecific T cell recognition assay measuring MHC ligand processing + and presentation + description: A MHC ligand processing and presentation assay in which the presence + of a specific ligand in an eluate is detected using the response of T cells + that are known to be monospecific for that ligand as a readout. + meaning: OBI:0001469 + OBI:0001473: + title: in vivo assay measuring T cell epitope specific protection after tumor + burden challenge + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge using tumor burden. + meaning: OBI:0001473 + OBI:0001475: + title: in vivo assay measuring T cell epitope specific protection from infectious + challenge based on pathogen burden + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge using pathogen burden. + meaning: OBI:0001475 + OBI:0001476: + title: phage display binding assay + description: A binding assay in which a collection of phages expressing a + library of different peptides or protein fragnments is used to infect cells, + followed by screening for cells that bind a protein of interest, and identifiying + the sequence of infecting phages to determine a suitable binding partner. + meaning: OBI:0001476 + OBI:0001478: + title: mass spectrometry assay measuring MHC ligand processing and presentation + description: A MHC ligand processing and presentation assay that uses a mass + spectrometry assay to identify eluted ligands + meaning: OBI:0001478 + OBI:0001482: + title: intracellular cytokine staining assay measuring epitope specific transforming + growth factor-beta production by T cells + description: A flow cytometry assay that detects transforming growth factor-beta + production by T cells. + meaning: OBI:0001482 + OBI:0001484: + title: assay measuring T cell epitope specific in vivo activity + description: A T cell epitope dependent biological activity determination + assay that uses an in vivo intervention experiment. + meaning: OBI:0001484 + OBI:0001488: + title: epitope tolerance induction experiment + description: An efficacy of epitope intervention experiment that tests the + ability of the intervention to decrease an existing immune response + meaning: OBI:0001488 + OBI:0001489: + title: mass spectrometry assay measuring MHC ligand processing and presentation + of MHC ligands eluted from cellular MHC + description: A mass spectrometry of MHC ligands assay that identifies eluted + ligands from cell bound MHC. + meaning: OBI:0001489 + OBI:0001490: + title: cytometric bead array measuring epitope specific granulocyte macrophage + colony-stimulating factor production by T cells + description: A cytometric bead array assay that detects granulocyte macrophage + colony stimulating factor production by T cells. + meaning: OBI:0001490 + OBI:0001491: + title: binding assay using radioactivity detection + description: A binding assay that uses radioactivity detection as an indicator + of binding. + meaning: OBI:0001491 + OBI:0001492: + title: in vivo assay measuring T cell epitope specific protection based on + survival + description: An in vivo assay measuring T cell epitope specific protection + from other challenge using survival. + meaning: OBI:0001492 + OBI:0001493: + title: cell bound MHC competitive binding assay of a MHC:ligand complex using + T cell epitope recognition + description: A cell bound MHC binding assay that uses a T cell epitope recognition + assay. + meaning: OBI:0001493 + OBI:0001495: + title: in vivo assay measuring epitope specific T cell helper activity + description: A T cell epitope dependent biological activity assay that detects + the ability of epitope specific helper T cells to enhance either B cell + or T cell adaptive immune response function. + meaning: OBI:0001495 + OBI:0001496: + title: intracellular cytokine staining assay measuring epitope specific interleukin-22 + production by T cells + description: A flow cytometry assay that detects interleukin-22 production + by T cells. + meaning: OBI:0001496 + OBI:0001497: + title: assay measuring epitope specific perforin release by T cells + description: A T cell epitope specific cytotoxic T cell degranulation assay + that detects perforin release by T cells. + meaning: OBI:0001497 + OBI:0001499: + title: binding assay using fluorescence detection + description: A binding assay that uses fluorescence detection as an indicator + of binding. + meaning: OBI:0001499 + OBI:0001500: + title: coelution assay measuring MHC ligand processing and presentation using + T cell recognition of HPLC fractionated eluate compared to synthetic ligand + description: A MHC ligand processing and presentation assay in which an HPL + chromatography is run to separate an input mixture of ligands eluted from + MHC into fractions. These fractions are tested for recognition by T cells + and compared to the recognition of a synthetic ligand that is presumed to + be the recognized epitope. Identical HPLC fractionation and T cell recognition + patterns confirm that the specific ligand was presented by MHC molecules. + meaning: OBI:0001500 + OBI:0001501: + title: fluorescence detection assay + description: An assay in which a material's fluorescence is determined. + meaning: OBI:0001501 + OBI:0001507: + title: in vivo assay measuring T cell epitope specific treatment of disease + description: An efficacy of T cell epitope intervention experiment that detects + a decrease in disease. + meaning: OBI:0001507 + OBI:0001509: + title: Edman degradation assay measuring MHC ligand processing and presentation + description: A MHC ligand processing and presentation assay that uses Edman + degradation to identify the eluted ligands + meaning: OBI:0001509 + OBI:0001510: + title: mass spectrometry assay measuring MHC ligand processing and presentation + of MHC ligands eluted from secreted MHC + description: A mass spectrometry of MHC ligands that identifies eluted ligands + from secreted MHC. + meaning: OBI:0001510 + OBI:0001512: + title: cytometric bead array assay measuring epitope specific interleukin-17A + production by T cells + description: A cytometric bead array assay that detects interleukin-17A production + by T cells. + meaning: OBI:0001512 + OBI:0001513: + title: radioactivity detection assay measuring competitive binding of a purified-MHC:ligand + complex + description: A radioactivity detection assay that detects loss of binding + of a known reference ligand to purified-MHC due to competition by the ligand + under investigation. + meaning: OBI:0001513 + OBI:0001516: + title: radioactivity detection assay measuring half maximal effective concentration + [EC50] to determine direct binding of a cell-lysate-MHC:ligand complex + description: A radioactivity detection assay that measures half maximal effective + concentration (EC50) to detect the direct binding of a cell-lysate-MHC molecule + with a ligand. + meaning: OBI:0001516 + OBI:0001517: + title: radioactivity detection assay measuring half maximal inhibitory concentration + [IC50] to determine competitive binding of a cell-bound-MHC:ligand complex + description: A radioactivity detection assay that measures half maximal inhibitory + concentration (IC50) to detect the loss of binding of a known reference + ligand to cell-bound-MHC due to competition by the ligand under investigation. + meaning: OBI:0001517 + OBI:0001519: + title: fluorescence detection assay measuring direct binding of a cell-lysate-MHC:ligand + complex + description: A fluorescence detection assay that detects direct binding of + a cell-lysate-MHC molecule with a ligand. + meaning: OBI:0001519 + OBI:0001520: + title: fluorescence detection assay measuring half maximal inhibitory concentration + [IC50] to determine competitive binding of a cell-bound-MHC:ligand complex + description: A fluorescence detection assay that measures half maximal inhibitory + concentration (IC50) to detect the loss of binding of a known reference + ligand to cell-bound-MHC due to competition by the ligand under investigation. + meaning: OBI:0001520 + OBI:0001521: + title: ELISA measuring epitope specific granulocyte colony stimulating factor + production by T cells + description: An enzyme-linked immunosorbent assay that detects granulocyte + colony stimulating factor production by T cells. + meaning: OBI:0001521 + OBI:0001523: + title: cytometric bead array assay measuring epitope specific interleukin-17F + production by T cells + description: A cytometric bead array assay that detects interleukin-17F production + by T cells. + meaning: OBI:0001523 + OBI:0001524: + title: fluorescence detection assay measuring equilibrium association constant + [KA] to determine direct binding of a cell-bound-MHC:ligand complex + description: A fluorescence detection assay that measures equilibrium association + constant (KA) to detect the direct binding of a cell-bound-MHC molecule + with a ligand. + meaning: OBI:0001524 + OBI:0001531: + title: fluorescence detection assay measuring half life to determine direct + binding of a purified-MHC:ligand complex + description: A fluorescence detection assay that measures half life to detect + the direct binding of a purified-MHC molecule with a ligand. + meaning: OBI:0001531 + OBI:0001532: + title: cytometric bead array assay measuring epitope specific interleukin-9 + production by T cells + description: A cytometric bead array assay that detects interleukin-9 production + by T cells. + meaning: OBI:0001532 + OBI:0001534: + title: fluorescence detection assay measuring competitive binding of a purified-MHC:ligand + complex + description: A fluorescence detection assay that detects loss of binding of + a known reference ligand to purified-MHC due to competition by the ligand + under investigation. + meaning: OBI:0001534 + OBI:0001537: + title: fluorescence detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a purified-MHC:ligand complex + description: A fluorescence detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to purified-MHC due to competition by the ligand under investigation. + meaning: OBI:0001537 + OBI:0001539: + title: fluorescence detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a cell-bound-MHC:ligand complex + description: A fluorescence detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to cell-bound-MHC due to competition by the ligand under investigation. + meaning: OBI:0001539 + OBI:0001541: + title: fluorescence detection assay measuring binding on rate [kon] to determine + direct binding of a purified-MHC:ligand complex + description: A fluorescence detection assay measuring binding on rate (kon) + to detect direct binding of a purified-MHC:ligand complex. + meaning: OBI:0001541 + OBI:0001542: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-13 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-13 production by T cells. + meaning: OBI:0001542 + OBI:0001543: + title: fluorescence detection assay measuring equilibrium dissociation constant + [KD] to determine direct binding of a purified-MHC:ligand complex approximated + by EC50 + description: A fluorescence detection assay that measures equilibrium dissociation + constant (KD) to detect direct binding of a purified-MHC molecule with a + ligand and provides EC50 values determined under assay conditions where + the EC50 approximates a KD value. + meaning: OBI:0001543 + OBI:0001544: + title: radioactivity detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a cell-lysate-MHC:ligand complex + description: A radioactivity detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to cell-lysate-MHC due to competition by the ligand under investigation. + meaning: OBI:0001544 + OBI:0001545: + title: intracellular cytokine staining assay measuring epitope specific macrophage + inflammatory protein-1 alpha production by T cells + description: A flow cytometry assay that detects macrophage inflammatory protein-1 + alpha production by T cells. + meaning: OBI:0001545 + OBI:0001549: + title: radioactivity detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a cell-bound-MHC:ligand complex + description: A radioactivity detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to cell-bound-MHC due to competition by the ligand under investigation. + meaning: OBI:0001549 + OBI:0001550: + title: assay measuring binding of a cell-bound-MHC:ligand complex + description: A qualitative binding assay that detects the binding of a cell-bound-MHC + molecule with a ligand. + meaning: OBI:0001550 + OBI:0001552: + title: intracellular cytokine staining assay measuring epitope specific tumor + necrosis factor (ligand) superfamily member 11 production by T cells + description: A flow cytometry assay that detects tumor necrosis factor (ligand) + superfamily member 11 production by T cells. + meaning: OBI:0001552 + OBI:0001553: + title: assay measuring a binding constant of a MHC:ligand complex + description: A MHC:ligand binding assay that measures a binding constant. + meaning: OBI:0001553 + OBI:0001555: + title: assay measuring binding of a purified-MHC:ligand complex + description: A qualitative binding assay that detects the binding of a purified-MHC + molecule with a ligand. + meaning: OBI:0001555 + OBI:0001556: + title: radioactivity detection assay measuring direct binding of a cell-lysate-MHC:ligand + complex + description: A radioactivity detection assay that detects direct binding of + a cell-lysate-MHC molecule with a ligand. + meaning: OBI:0001556 + OBI:0001558: + title: radioactivity detection assay measuring half life to determine direct + binding of a cell-bound-MHC:ligand complex + description: A radioactivity detection assay that measures half life to detect + the direct binding of a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001558 + OBI:0001559: + title: fluorescence detection assay measuring half life to determine direct + binding of a cell-bound-MHC:ligand complex + description: A fluorescence detection assay that measures half life to detect + the direct binding of a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001559 + OBI:0001561: + title: fluorescence detection assay measuring half maximal effective concentration + [EC50] to determine direct binding of a cell-bound-MHC:ligand complex + description: A fluorescence detection assay that measures half maximal effective + concentration (EC50) to detect direct binding of a cell-bound-MHC molecule + with a ligand. + meaning: OBI:0001561 + OBI:0001562: + title: intracellular cytokine staining assay measuring epitope specific interleukin-17F + production by T cells + description: A flow cytometry assay that detects interleukin-17F production + by T cells. + meaning: OBI:0001562 + OBI:0001564: + title: radioactivity detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a purified-MHC:ligand complex approximated + by IC50 + description: A radioactivity detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to purified-MHC due to competition by the ligand under investigation and + provides IC50 values determined under assay conditions where the IC50 approximates + a KD value. + meaning: OBI:0001564 + OBI:0001565: + title: radioactivity detection assay measuring half life to determine direct + binding of a cell-lysate-MHC:ligand complex + description: A radioactivity detection assay that measures half life to detect + the direct binding of a cell-lysate-MHC molecule with a ligand. + meaning: OBI:0001565 + OBI:0001567: + title: radioactivity detection assay measuring binding off rate [koff] to + determine direct binding of a cell-lysate-MHC:ligand complex + description: A radioactivity detection assay that measures binding off rate + [koff] to detect direct binding of a cell-lysate-MHC molecule with a ligand. + meaning: OBI:0001567 + OBI:0001568: + title: radioactivity detection assay measuring half maximal inhibitory concentration + [IC50] to determine competitive binding of a purified-MHC:ligand complex + description: A radioactivity detection assay that measures half maximal inhibitory + concentration (IC50) to detect the loss of binding of a known reference + ligand to purified-MHC due to competition by the ligand under investigation. + meaning: OBI:0001568 + OBI:0001569: + title: fluorescence detection assay measuring binding off rate [koff] to determine + direct binding of a purified-MHC:ligand complex + description: A fluorescence detection assay that measures binding off rate + [koff] to detect direct binding of a purified-MHC molecule with a ligand. + meaning: OBI:0001569 + OBI:0001570: + title: assay measuring epitope specific vascular endothelial growth factor + production by T cells + description: A T cell epitope specific cytokine production assay that detects + vascular endothelial growth factor production by T cells. + meaning: OBI:0001570 + OBI:0001577: + title: cytometric bead array assay measuring epitope specific intracellular + cytokine staining (ICS) IL-22 production by T cells + description: A cytometric bead array assay that detects interleukin-22 production + by T cells. + meaning: OBI:0001577 + OBI:0001578: + title: ELISA measuring epitope specific vascular endothelial growth factor + production by T cells + description: An enzyme-linked immunosorbent assay that detects vascular endothelial + growth factor production by T cells. + meaning: OBI:0001578 + OBI:0001579: + title: assay measuring binding of a cell-lysate-MHC:ligand complex + description: A qualitative binding assay that detects the binding of a cell-lysate-MHC + molecule with a ligand. + meaning: OBI:0001579 + OBI:0001584: + title: phage display binding assay measuring binding of a purified-MHC:ligand + complex + description: A phage display binding assay that detects direct binding of + a purified-MHC molecule with a ligand. + meaning: OBI:0001584 + OBI:0001585: + title: cytometric bead array assay measuring epitope specific interleukin-7 + production by T cells + description: A cytometric bead array assay that detects interleukin-7 production + by T cells. + meaning: OBI:0001585 + OBI:0001586: + title: radioactivity detection assay measuring half life to determine direct + binding of a purified-MHC:ligand complex + description: A radioactivity detection assay that measures half life to detect + the direct binding of a purified-MHC molecule with a ligand. + meaning: OBI:0001586 + OBI:0001587: + title: assay measuring epitope specific interleukin-7 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-7 production by T cells. + meaning: OBI:0001587 + OBI:0001589: + title: intracellular cytokine staining assay measuring epitope specific interleukin-17A + production by T cells + description: A flow cytometry assay that detects interleukin-17A production + by T cells. + meaning: OBI:0001589 + OBI:0001590: + title: fluorescence detection assay measuring direct binding of a purified-MHC:ligand + complex + description: A fluorescence detection assay that detects direct binding of + a purified-MHC molecule with a ligand. + meaning: OBI:0001590 + OBI:0001591: + title: direct binding assay + description: A binding assay that measures the formation or disassociation + of a complex of 2 material entities directly without use of a competitve + ligand. + meaning: OBI:0001591 + OBI:0001592: + title: fluorescence detection assay measuring half maximal effective concentration + [EC50] to determine direct binding of a purified-MHC:ligand complex + description: A fluorescence detection assay that measures half maximal effective + concentration (EC50) to detect direct binding of a purified-MHC molecule + with a ligand. + meaning: OBI:0001592 + OBI:0001593: + title: competitive inhibition of binding assay + description: A binding assay that detects the inhibition of binding between + 2 material entities known to form a complex by the addition of a third material + entity of interest. Inhibition of binding between the 2 materials reflects + binding by the third material. + meaning: OBI:0001593 + OBI:0001594: + title: fluorescence detection assay measuring competitive binding of a cell-bound-MHC:ligand + complex + description: A fluorescence detection assay that detects loss of binding of + a known reference ligand to cell-bound-MHC due to competition by the ligand + under investigation. + meaning: OBI:0001594 + OBI:0001595: + title: X-ray crystallography assay determining the 3D structure of a MHC:ligand + complex + description: A X-ray crystallography 3D molecular structure determination + assay that characterizes the 3-dimensional molecular structure of a MHC:ligand + complex. + meaning: OBI:0001595 + OBI:0001597: + title: cell bound MHC competitive binding assay measuring half maximal inhibitory + concentration [IC50] of a MHC:ligand complex using T cell epitope recognition + description: A cell bound MHC ligand binding half maximal inhibitory concentration + (IC50) determination assay that uses a T cell epitope recognition assay + to measure ligand binding. + meaning: OBI:0001597 + OBI:0001599: + title: radioactivity detection assay measuring competitive binding of a cell-bound-MHC:ligand + complex + description: A radioactivity detection assay that detects loss of binding + of a known reference ligand to cell-bound-MHC due to competition by the + ligand under investigation. + meaning: OBI:0001599 + OBI:0001600: + title: assay measuring epitope specific granulocyte colony stimulating factor + production by T cells + description: A T cell epitope specific cytokine production assay that detects + granulocyte colony stimulating factor production by T cells. + meaning: OBI:0001600 + OBI:0001601: + title: cytometric bead array assay measuring epitope specific intracellular + cytokine staining (ICS) IL-21 production by T cells + description: A cytometric bead array assay that detects interleukin-21 production + by T cells. + meaning: OBI:0001601 + OBI:0001602: + title: radioactivity detection assay measuring direct binding of a cell-bound-MHC:ligand + complex + description: A radioactivity detection assay that detects direct binding of + a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001602 + OBI:0001604: + title: fluorescence detection assay measuring 50% dissociation of binding + temperature [Tm] of a purified-MHC:ligand complex + description: A fluorescence detection assay that measures the 50% dissociation + of binding temperature of a purified-MHC molecule with a ligand. + meaning: OBI:0001604 + OBI:0001606: + title: fluorescence detection assay measuring direct binding of a cell-bound-MHC:ligand + complex + description: A fluorescence detection assay that detects direct binding of + a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001606 + OBI:0001607: + title: assay measuring epitope specific tumor necrosis factor (ligand) superfamily + member 11 production by T cells + description: An assay of epitope specific tumor necrosis factor (ligand) superfamily + member 11 production by T cells that detects tumor necrosis factor production. + meaning: OBI:0001607 + OBI:0001608: + title: radioactivity detection assay measuring direct binding of a purified-MHC:ligand + complex + description: A radioactivity detection assay that detects direct binding of + a purified-MHC molecule with a ligand. + meaning: OBI:0001608 + OBI:0001609: + title: intracellular cytokine staining assay measuring epitope specific interleukin-8 + production by T cells + description: A flow cytometry assay that detects interleukin-8 production + by T cells. + meaning: OBI:0001609 + OBI:0001610: + title: cytometric bead array assay measuring epitope specific intracellular + cytokine staining (ICS) IL-23 production by T cells + description: A cytometric bead array assay that detects interleukin-23 production + by T cells. + meaning: OBI:0001610 + OBI:0001613: + title: fluorescence detection assay measuring half maximal inhibitory concentration + [IC50] to determine competitive binding of a purified-MHC:ligand complex + description: A fluorescence detection assay that measures half maximal inhibitory + concentration (IC50) to detect the loss of binding of a known reference + ligand to purified-MHC due to competition by the ligand under investigation. + meaning: OBI:0001613 + OBI:0001624: + title: organism species detection assay + description: An organism detection assay that identifies the organism species + in a specimen. + meaning: OBI:0001624 + OBI:0001630: + title: analytical chromatography + description: An analyte assay that uses a biomaterial's preferential affinity + for either the mobile phase or the stationary phase to separate it from + other materials and thereby detect its presence in an input material. + meaning: OBI:0001630 + OBI:0001631: + title: electron microscopy imaging assay + description: An imaging assay in which an electrons are used to probe the + density, shape and composition of an input material which are detected in + an electron microscope and utilized to produce an image of the material. + meaning: OBI:0001631 + OBI:0001632: + title: immuno staining assay + description: A assay detecting a molecular label assay in which the label + is attached to an antibody so that substances are marked based on the antibody's + binding specificity. + meaning: OBI:0001632 + OBI:0001634: + title: calorimetric binding assay + description: A binding assay in which the heat generated or absorbed during + a binding event is measured, which allows determination of binding constants, + reaction stoichiometry, enthalpy and entropy. + meaning: OBI:0001634 + OBI:0001635: + title: antibody binding detection by fluorescence quenching + description: A binding assay in which affinity is measured by detecting a + change in fluorescence (usually quenching) that occurs upon binding of the + antibody to the ligand. The fluorescent signal that is affected by binding + is either from an exogenous fluorophore attached to the ligand, or is the + intrisic fluorescence of aromatic (tryptophan) residues on the binding site + of the antibody (no conjugated fluorophore necessary) or, less commonly, + on the ligand binding region (epitope). + meaning: OBI:0001635 + OBI:0001638: + title: antigen inhibition assay measuring the dissociation constant [KD] of + a B cell epitope:antibody complex approximated by IC50 + description: A B cell epitope equilibrium dissociation constant (KD) assay + that provides IC50 values determined under assay conditions where the IC50 + approximates a KD value using a B cell epitope antigen inhibition of binding + assay. + meaning: OBI:0001638 + OBI:0001639: + title: assay measuring epitope specific Ig-mediated histamine release + description: A B cell epitope specific activation of additional immune response + assay that detects histamine release in vitro. + meaning: OBI:0001639 + OBI:0001640: + title: assay measuring epitope specific immunoglobulin-mediated antigen activation + description: A B cell epitope dependent biological activity determination + assay that detects antigen activation. + meaning: OBI:0001640 + OBI:0001641: + title: assay measuring epitope specific complement-dependent cytotoxicity + description: A B cell epitope specific activation of additional immune response + assay that detects complement-dependent cytotoxicity in vitro . + meaning: OBI:0001641 + OBI:0001642: + title: assay measuring epitope specific antibody-dependent cellular cytotoxicity + description: A B cell epitope specific activation of additional immune response + assay that detects antibody-dependent cellular cytotoxicity in vitro. + meaning: OBI:0001642 + OBI:0001643: + title: assay measuring epitope specific immunoglobulin-mediated neutralization + description: A B cell epitope dependent biological activity determination + assay that detects neutralization of the antigen. + meaning: OBI:0001643 + OBI:0001644: + title: assay measuring epitope specific opsonization + description: A B cell epitope specific activation of additional immune response + assay that detects opsonization in vitro . + meaning: OBI:0001644 + OBI:0001645: + title: calorimetry assay measuring binding of a B cell epitope:antibody complex + description: A calorimetric binding assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001645 + OBI:0001646: + title: electron microscopy assay determining the 3D structure of a B cell + epitope:antibody complex + description: An electron-microscopy 3D molecular structure determination assay + that characterizes the 3-dimensional molecular structrue of a B cell epitope:antibody + complex + meaning: OBI:0001646 + OBI:0001647: + title: NMR assay determining the 3D structure of a B cell epitope:antibody + complex + description: A nuclear magnetic resonance 3D molecular structure determination + assay that characterizes the 3-dimensional structure of a B cell epitope:antibody + complex. + meaning: OBI:0001647 + OBI:0001648: + title: cross blocking assay measuring binding of a B cell epitope:antibody + complex + description: A cross-blocking assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001648 + OBI:0001649: + title: RIA measuring binding of a B cell epitope:antibody complex + description: A radio immuno assay that detects the binding of an antigen with + an antibody. + meaning: OBI:0001649 + OBI:0001650: + title: immunoblot assay measuring binding of a B cell epitope:antibody complex + description: An immunoblot assay that detects the binding of an antigen with + an antibody. + meaning: OBI:0001650 + OBI:0001651: + title: plasmon resonance assay measuring binding of a B cell epitope:antibody + complex + description: A surface plasmon resonance binding assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0001651 + OBI:0001652: + title: immuno staining assay measuring binding of a B cell epitope:antibody + complex + description: An immuno staining assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001652 + OBI:0001653: + title: immunoprecipitation assay measuring binding of a B cell epitope:antibody + complex + description: An immunoprecipitation assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001653 + OBI:0001654: + title: mass spectrometry assay measuring binding of a B cell epitope:antibody + complex + description: A mass spectrometry assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001654 + OBI:0001655: + title: phage display assay measuring binding of a B cell epitope:antibody + complex + description: A phage display binding assay that detects the binding of an + antigen with an antibody. + meaning: OBI:0001655 + OBI:0001656: + title: electron microscopy assay measuring binding of a B cell epitope:antibody + complex + description: An electron microscopy imaging assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0001656 + OBI:0001657: + title: ELISA measuring binding of a B cell epitope:antibody complex + description: An enzyme-linked immunosorbent assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0001657 + OBI:0001658: + title: ELISPOT assay measuring binding of a B cell epitope:antibody complex + description: An enzyme-linked immunospot assay that detects the binding of + an antigen with an antibody. + meaning: OBI:0001658 + OBI:0001659: + title: flow cytometry assay measuring binding of a B cell epitope:antibody + complex + description: A flow cytometry assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001659 + OBI:0001660: + title: intracellular material detection assay measuring epitope specific granzyme + A release by T cells + description: A flow cytometry assay that detects epitope specific granzyme + A release by T cells. + meaning: OBI:0001660 + OBI:0001661: + title: chromatography assay measuring binding of a B cell epitope:antibody + complex + description: An analytical chromatography assay that detects the binding of + an antigen with an antibody. + meaning: OBI:0001661 + OBI:0001662: + title: NMR assay measuring binding of a B cell epitope:antibody complex + description: A B cell epitope qualitative binding to antibody assay that uses + a nuclear magnetic resonance assay. + meaning: OBI:0001662 + OBI:0001663: + title: ELISA measuring epitope specific granulysin release by T cells + description: An enzyme-linked immunosorbent assay that detects epitope specific + granulysin release by T cells. + meaning: OBI:0001663 + OBI:0001664: + title: intracellular material detection assay measuring epitope specific granulysin + release by T cells + description: A flow cytometry assay that detects epitope specific granulysin + release by T cells. + meaning: OBI:0001664 + OBI:0001665: + title: fluorescence detection assay measuring binding off rate [koff] to determine + direct binding of a cell-bound-MHC:ligand complex + description: A fluorescence detection assay that measures binding off rate + [koff] to detect direct binding of a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001665 + OBI:0001666: + title: fluorescence detection assay measuring binding on rate [kon] to determine + direct binding of a cell-bound-MHC:ligand complex + description: A fluorescence detection assay that measures binding on rate + (kon) to detect direct binding of a cell-bound-MHC molecule with a ligand. + meaning: OBI:0001666 + OBI:0001667: + title: fluorescence detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a purified-MHC:ligand complex approximated + by IC50 + description: A fluorescence detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to purified-MHC due to competition by the ligand under investigation and + provides IC50 values determined under assay conditions where the IC50 approximates + a KD value. + meaning: OBI:0001667 + OBI:0001668: + title: split-ubiquitin assay + description: A binding assay that screens membrane soluble proteins by fusion + of two integral membrane proteins (bait and prey) to two different ubiquitin + moieties. One moiety is also fused to a transcription factor (TF) that can + be cleaved off by ubiquitin specific proteases. Upon bait and prey interaction, + Nub and Cub-moieties assemble, reconstituting the split-ubiquitin. The reconstituted + split-ubiquitin molecule is recognized by ubiquitin specific proteases, + which cleave off the reporter protein, allowing it to induce the transcription + of reporter genes. + meaning: OBI:0001668 + OBI:0001669: + title: far-western blot assay + description: An assay that measures protein-protein interactions by separating + target proteins on an SDS-PAGE gel, transfering them to a solid substrate, + hybridizing with a protein probe and visualizing bound proteins using a + probe-directed antibody. This is a adaptation on the western blot assay. + meaning: OBI:0001669 + OBI:0001670: + title: RNA protection assay + description: An assay that determines the presence and estimates abundance + of transcript species by first creating an homo or heteroduplex by adding + a specific, complementary sequence to the sequence of interest and then + exposing the mixture of ribonuclease, which will degrade only single stranded + molecules. A detection step will reveal if the sample contained a sequence + of interest. + meaning: OBI:0001670 + OBI:0001671: + title: electrophoretic mobility shift assay + description: An assay that measures information about Protein-DNA or Protein-RNA + interactions using gel electrophoresis and relying on the fact the molecular + interactions will cause the heterodimer to be retarded on the gel when compared + to controls corresponding to protein extract alone and protein extract + + neutral nucleic acid. + meaning: OBI:0001671 + OBI:0001672: + title: gene knock-down assay + description: An assay which transiently disrupts gene transcripts by expressing + antisense RNA constructs or delivering RNA interfering molecules in cells. + meaning: OBI:0001672 + OBI:0001673: + title: nano-cap analysis of gene expression assay + description: A transcription profiling by RNA sequencing assay that is performed + using a very low amount (nanogram scale) of mRNA samples using Cap analysis + gene expression (CAGE). + meaning: OBI:0001673 + OBI:0001674: + title: cap analysis of gene expression assay + description: A transcription profiling by RNA sequencing assay which measures + RNA transcript abundances in biological samples by extracting 5' ends of + capped transcripts, RTPCR and sequence those. Copy numbers of CAGE tags + provide a way of quantification and provide a measure of expression of the + transcriptome + meaning: OBI:0001674 + OBI:0001675: + title: ELISA measuring epitope specific interleukin-17A production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-17A + production by T cells. + meaning: OBI:0001675 + OBI:0001676: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-7 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-7 production by T cells. + meaning: OBI:0001676 + OBI:0001679: + title: yeast 2-hybrid assay + description: An assay that detects protein protein interactions and protein + DNA interactions by testing for physical interactions (such as binding) + between two proteins or a single protein and a DNA molecule, respectively. + The premise behind the test is the activation of downstream reporter gene(s) + by the binding of a transcription factor onto an upstream activating sequence + (UAS). For two-hybrid screening, the transcription factor is split into + two separate fragments, called the binding domain (BD) and activating domain + (AD). The BD is the domain responsible for binding to the UAS and the AD + is the domain responsible for the activation of transcription. The Y2H is + thus a protein-fragment complementation assay. + meaning: OBI:0001679 + OBI:0001680: + title: Sos-recruitment assay + description: A binding assay that detects interacting proteins for a targeted + domain where mammalian guanyl nucleotide exchange factor (GEF) Sos is recruited + to the Saccharomyces cerevisiae plasma membrane harboring a temperature-sensitive + Ras GEF, Cdc25-2, allowing growth at the nonpermissive temperature using + the Sos recruitment system, a kind of yeast 2 hybrid system. + meaning: OBI:0001680 + OBI:0001681: + title: yeast one-hybrid assay + description: An assay that determines protein DNA interactions using a single + fusion protein in which the activating domain is linked directly to the + binding domain. + meaning: OBI:0001681 + OBI:0001682: + title: bacterial one-hybrid assay + description: An assay that identifies the sequence-specific target site of + a DNA-binding domain. In this system, a given transcription factor (TF) + is expressed as a fusion to a subunit of RNA polymerase. In parallel, a + library of randomized oligonucleotides representing potential TF target + sequences, is cloned into a separate vector containing the selectable genes + HIS3 and URA3. If the DNA-binding domain (bait) binds a potential DNA target + site (prey) in vivo, it will recruit RNA polymerase to the promoter and + activate transcription of the reporter genes in that clone. The two reporter + genes, HIS3 and URA3, allow for positive and negative selections, respectively. + At the end of the process, positive clones are sequenced and examined with + motif-finding tools in order to resolve the favoured DNA target sequence + meaning: OBI:0001682 + OBI:0001683: + title: chromosome organization assay by fluorescence in-situ hybridization + description: An in-situ hybridization assay that uses fluorescence to detect + chromosomal integrity + meaning: OBI:0001683 + OBI:0001684: + title: methylation-specific polymerase chain reaction assay + description: An assay that uses initial modification of DNA by sodium bisulfite, + converting all unmethylated, but not methylated, cytosines to uracil, and + subsequent amplification with primers specific for methylated versus unmethylated + DNA. + meaning: OBI:0001684 + OBI:0001685: + title: amplification of intermethylated sites assay + description: An assay that estimates genome-wide DNA methylation and measures + methylation of DNA sequences. AIMS is based on the differential enzymatic + digestion of genomic DNA with methylation-sensitive and methylation-insensitive + isoschizomers followed by restrained PCR amplification of methylated sequences. + meaning: OBI:0001685 + OBI:0001686: + title: in-situ hybridization assay + description: An assay that localizes a specific DNA or RNA sequence within + a portion or section of tissue using artificially induced nucleic hybridization. + meaning: OBI:0001686 + OBI:0001689: + title: cytochalasin-induced inhibition of actin polymerization assay + description: 'An assay which uses compound cytochalasin (CHEBI: 23528) to + block actin polymerization-dependent cell motility (GO:0070358) and actin + filament polymerization (GO:0030041).' + meaning: OBI:0001689 + OBI:0001692: + title: in vivo assay measuring B cell epitope specific protection from fertility + description: An efficacy of B cell epitope intervention experiment that uses + a epitope protection experiment based on reduction of fertility. + meaning: OBI:0001692 + OBI:0001693: + title: in vivo assay measuring B cell epitope specific tolerance induction + description: An efficacy of B cell epitope intervention experiment that uses + a tolerance induction intervention experiment. + meaning: OBI:0001693 + OBI:0001694: + title: in vivo assay measuring B cell epitope specific induction of hypersensitivity + description: An efficacy of B cell epitope intervention experiment that detects + a hypersensitivity response by monitoring skin reactions. + meaning: OBI:0001694 + OBI:0001695: + title: assay measuring epitope specific immune complex formation + description: A B cell epitope specific activation of additional immune response + assay that detects agglutination in vitro. + meaning: OBI:0001695 + OBI:0001696: + title: in vivo assay measuring B cell epitope specific protection based on + survival + description: An in vivo assay measuring B cell epitope specific protection + from other challenge using survival. + meaning: OBI:0001696 + OBI:0001697: + title: in vivo assay measuring B cell epitope specific treatment of disease + description: An efficacy of B cell epitope intervention experiment that detects + a decrease in disease. + meaning: OBI:0001697 + OBI:0001698: + title: assay measuring B cell epitope specific in vivo activity + description: A B cell epitope dependent biological activity determination + assay that uses an in vivo intervention experiment. + meaning: OBI:0001698 + OBI:0001699: + title: antibody cross-blocking assay + description: A competitive inhibition of binding assay in which two antibodies + that are known to bind the same antigen are tested for the ability of one + antibody to inhibit binding of the other antibody to the antigen, thereby + determining if they have overlapping binding sites. + meaning: OBI:0001699 + OBI:0001700: + title: immunoprecipitation assay + description: An analyte assay in which an input material is mixed with antibodies + and bound antigen:antibody complexes are separated out using immunoprecipitation. + Either the antibody has known specificy, and the antigen mixture is tested + for the presence of a specific antigen, or the antigen solution is well + defined and the antibody solution is tested for the presence of antigen + specific antibodies. + meaning: OBI:0001700 + OBI:0001701: + title: antigen inhibition assay measuring binding of a B cell epitope:antibody + complex + description: A B cell epitope qualitative binding to antibody assay that measures + the ability of an antigen to inhibit antibody binding to a known ligand. + meaning: OBI:0001701 + OBI:0001703: + title: assay measuring qualitative binding of a B cell epitope:antibody complex + description: An assay that detects the binding of an antigen with an antibody, + and produces a qualitative measurement of the binding as an output. + meaning: OBI:0001703 + OBI:0001704: + title: assay measuring epitope specific activation of additional immune response + in vitro + description: A B cell epitope dependent biological activity determination + assay that detects secondary in vitro activity. + meaning: OBI:0001704 + OBI:0001705: + title: assay measuring epitope specific antigen inhibition of antibody activity + description: A B cell epitope dependent biological activity determination + assay that detects inhibition of the antibody's activity by the antigen. + meaning: OBI:0001705 + OBI:0001706: + title: assay measuring biological activity resulting from B cell epitope:antibody + binding + description: A B cell epitope assay that measures the immune response process + resulting from the binding of an antibody receptor to epitope or recognition + of the epitope. + meaning: OBI:0001706 + OBI:0001708: + title: assay measuring the dissociation constant [KD] of a B cell epitope:antibody + complex + description: A B cell epitope binding constant determination assay that measures + the dissociation constant KD. + meaning: OBI:0001708 + OBI:0001709: + title: assay measuring a binding constant of a B cell epitope:antibody complex + description: A B cell epitope recognition assay that quantitavely characterizes + the binding of an antibody / BCR with a ligand by determining a binding + constant. + meaning: OBI:0001709 + OBI:0001710: + title: in vivo assay measuring B cell epitope specific protection from challenge + description: An efficacy of B cell epitope intervention experiment that uses + a epitope protection experiment. + meaning: OBI:0001710 + OBI:0001711: + title: in vivo assay measuring B cell epitope specific disease exacerbation + description: An efficacy of B cell epitope intervention experiment that uses + a disease exacerbation in vivo intervention experiment. + meaning: OBI:0001711 + OBI:0001718: + title: assay measuring the on rate [kon] of a B cell epitope:antibody complex + description: A B cell epitope binding constant determination assay that measures + the on rate. + meaning: OBI:0001718 + OBI:0001719: + title: assay measuring the association constant [KA] of a B cell epitope:antibody + complex + description: A B cell epitope binding constant determination assay that measures + the association constant KA. + meaning: OBI:0001719 + OBI:0001721: + title: 3D molecular structure determination assay of an antigen:antibody complex + description: A 3D structure determination of bound molecular complex assay + that characterizes the 3-dimensional structure of an antigen:antobody complex. + meaning: OBI:0001721 + OBI:0001723: + title: assay measuring the off rate [koff] of a B cell epitope:antibody complex + description: A B cell epitope binding constant determination assay that measures + the off rate. + meaning: OBI:0001723 + OBI:0001724: + title: viral hemagglutination inhibition assay measuring binding of a B cell + epitope:antibody complex + description: A viral hemagglutination inhibition assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0001724 + OBI:0001726: + title: quenching assay measuring binding of a B cell epitope:antibody complex + description: A fluorescence quenching assay that detects the binding of an + antigen with an antibody. + meaning: OBI:0001726 + OBI:0001727: + title: RIA measuring the dissociation constant [KD] of a B cell epitope:antibody + complex + description: A radio immuno assay that measures the dissociation constant + [KD] of an antigen binding with an antibody. + meaning: OBI:0001727 + OBI:0001728: + title: ELISA measuring the dissociation constant [KD] of a B cell epitope:antibody + complex + description: An enzyme-linked immunosorbent assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0001728 + OBI:0001729: + title: quenching assay measuring the dissociation constant [KD] of a B cell + epitope:antibody complex + description: A fluorescence quenching assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0001729 + OBI:0001730: + title: surface plasmon resonance assay measuring the association constant + [KA] of a B cell epitope:antibody complex + description: A surface plasmon resonance binding assay that measures the association + constant [KA] of an antigen binding with an antibody. + meaning: OBI:0001730 + OBI:0001731: + title: surface plasmon resonance assay measuring the dissociation constant + [KD] of a B cell epitope:antibody complex + description: A surface plasmon resonance binding assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0001731 + OBI:0001732: + title: quenching assay measuring the association constant [KA] of a B cell + epitope:antibody complex + description: A fluorescence quenching assay that measures the association + constant [KA] of an antigen binding with an antibody. + meaning: OBI:0001732 + OBI:0001733: + title: calorimetry assay measuring the association constant [KA] of a B cell + epitope:antibody complex + description: A calorimetric binding assay that measures the association constant + [KA] of an antigen binding with an antibody. + meaning: OBI:0001733 + OBI:0001734: + title: calorimetry assay measuring the dissociation constant [KD] of a B cell + epitope:antibody complex + description: A calorimetric binding assay that measures the dissociation constant + [KD] of an antigen binding with an antibody. + meaning: OBI:0001734 + OBI:0001735: + title: ELISA measuring the association constant [KA] of a B cell epitope:antibody + complex + description: An enzyme-linked immunosorbent assay that measures the association + constant [KA] of an antigen binding with an antibody. + meaning: OBI:0001735 + OBI:0001736: + title: RIA measuring the association constant [KA] of a B cell epitope:antibody + complex + description: A radio immuno assay that measures the association constant [KA] + of an antigen binding with an antibody. + meaning: OBI:0001736 + OBI:0001738: + title: X-ray crystallography assay determining the 3D structure of a B cell + epitope:antibody complex + description: A X-ray crystallography 3D molecular structure determination + assay that characterizes the 3-dimensional molecular structrue of a B cell + epitope:antibody complex. + meaning: OBI:0001738 + OBI:0001739: + title: surface plasmon resonance assay measuring the off rate [koff] of a + B cell epitope:antibody complex + description: A surface plasmon resonance binding assay that measures the off + rate [koff] of an antigen binding with an antibody. + meaning: OBI:0001739 + OBI:0001740: + title: quenching assay measuring the off rate [koff] of a B cell epitope:antibody + complex + description: A fluorescence quenching assay that measures the off rate [koff] + of an antigen binding with an antibody. + meaning: OBI:0001740 + OBI:0001741: + title: surface plasmon resonance assay measuring the on rate [kon] of a B + cell epitope:antibody complex + description: A surface plasmon resonance binding assay that measures the on + rate [kon] of an antigen binding with an antibody. + meaning: OBI:0001741 + OBI:0001742: + title: quenching assay measuring the on rate [kon] of a B cell epitope:antibody + complex + description: A fluorescence quenching assay that measures the on rate [kon] + of an antigen binding with an antibody. + meaning: OBI:0001742 + OBI:0001743: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-1 beta production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-1 beta production by T cells. + meaning: OBI:0001743 + OBI:0001744: + title: intracellular cytokine staining assay measuring epitope specific interleukin-1 + alpha production by T cells + description: A flow cytometry assay that detects interleukin-1 alpha production + by T cells. + meaning: OBI:0001744 + OBI:0001745: + title: ELISPOT assay measuring epitope specific interleukin-1 alpha production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-1 + alpha production by T cells. + meaning: OBI:0001745 + OBI:0001746: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-1 alpha production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-1 alpha production by T cells. + meaning: OBI:0001746 + OBI:0001747: + title: cytometric bead array assay measuring epitope specific interleukin-1 + alpha production by T cells + description: A cytometric bead array assay that detects interleukin-1 alpha + production by T cells. + meaning: OBI:0001747 + OBI:0001748: + title: ELISPOT assay measuring epitope specific interferon-beta production + by T cells + description: An enzyme-linked immunospot assay that detects interferon-beta + production by T cells. + meaning: OBI:0001748 + OBI:0001749: + title: intracellular cytokine staining assay measuring epitope specific interferon-beta + production by T cells + description: A flow cytometry assay that detects interferon-beta production + by T cells. + meaning: OBI:0001749 + OBI:0001750: + title: intracellular cytokine staining assay measuring epitope specific granulocyte + colony stimulating factor production by T cells + description: A flow cytometry assay that detects granulocyte colony stimulating + factor production by T cells. + meaning: OBI:0001750 + OBI:0001751: + title: ELISA measuring epitope specific interferon-beta production by T cells + description: An enzyme-linked immunosorbent assay that detects interferon-beta + production by T cells. + meaning: OBI:0001751 + OBI:0001752: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific granulocyte colony stimulating factor production + by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects granulocyte colony stimulating factor production by + T cells. + meaning: OBI:0001752 + OBI:0001753: + title: ELISPOT assay measuring epitope specific granulocyte colony stimulating + factor production by T cells + description: An enzyme-linked immunospot assay that detects granulocyte colony + stimulating factor production by T cells. + meaning: OBI:0001753 + OBI:0001754: + title: cytometric bead array assay measuring epitope specific chemokine (C-X-C + motif) ligand 9 production by T cells + description: A cytometric bead array assay that detects chemokine (C-X-C motif) + ligand 9 production by T cells. + meaning: OBI:0001754 + OBI:0001756: + title: ELISPOT assay measuring epitope specific chemokine (C-X-C motif) ligand + 9 production by T cells + description: An enzyme-linked immunospot assay that detects chemokine (C-X-C + motif) ligand 9 production by T cells. + meaning: OBI:0001756 + OBI:0001757: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-X-C motif) ligand 9 production by + T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-X-C motif) ligand 9 production by T cells. + meaning: OBI:0001757 + OBI:0001758: + title: ELISPOT assay measuring epitope specific chemokine (C-C motif) ligand + 4 production by T cells + description: An enzyme-linked immunospot assay that detects chemokine (C-C + motif) ligand 4 production by T cells. + meaning: OBI:0001758 + OBI:0001759: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-X-C motif) ligand 12 production + by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-X-C motif) ligand 12 production by T cells. + meaning: OBI:0001759 + OBI:0001760: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-X-C motif) ligand 13 production + by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-X-C motif) ligand 13 production by T cells. + meaning: OBI:0001760 + OBI:0001761: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-X-C motif) ligand 16 production + by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-X-C motif) ligand 16 production by T cells. + meaning: OBI:0001761 + OBI:0001762: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 21 production by + T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 21 production by T cells. + meaning: OBI:0001762 + OBI:0001763: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 22 production by + T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 22 production by T cells. + meaning: OBI:0001763 + OBI:0001764: + title: cytometric bead array assay measuring epitope specific chemokine (C-C + motif) ligand 4 production by T cells + description: A cytometric bead array assay that detects chemokine (C-C motif) + ligand 4 production by T cells. + meaning: OBI:0001764 + OBI:0001765: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 4 production by + T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 4 production by T cells. + meaning: OBI:0001765 + OBI:0001766: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific vascular endothelial growth factor production + by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects vascular endothelial growth factor production by T cells. + meaning: OBI:0001766 + OBI:0001767: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 19 production by + T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 19 production by T cells. + meaning: OBI:0001767 + OBI:0001768: + title: intracellular cytokine staining assay measuring epitope specific chemokine + (C-C motif) ligand 1 production by T cells + description: A flow cytometry assay that detects chemokine (C-C motif) ligand + 1 production by T cells. + meaning: OBI:0001768 + OBI:0001770: + title: intracellular cytokine staining assay measuring epitope specific vascular + endothelial growth factor production by T cells + description: A flow cytometry assay that detects vascular endothelial growth + factor production by T cells. + meaning: OBI:0001770 + OBI:0001771: + title: ELISPOT assay measuring epitope specific vascular endothelial growth + factor production by T cells + description: An enzyme-linked immunospot assay that detects vascular endothelial + growth factor production by T cells. + meaning: OBI:0001771 + OBI:0001772: + title: assay measuring epitope specific interleukin-17F production by T cells + description: An assay of epitope specific interleukin-17 production by T cells + that detects interleukin-17F production. + meaning: OBI:0001772 + OBI:0001773: + title: assay measuring epitope specific interleukin-17A production by T cells + description: An assay of epitope specific interleukin-17 production by T cells + that detects interleukin-17A production. + meaning: OBI:0001773 + OBI:0001774: + title: assay measuring epitope specific chemokine (C-C motif) ligand 21 production + by T cells + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 21 production by T cells. + meaning: OBI:0001774 + OBI:0001775: + title: assay measuring epitope specific chemokine (C-C motif) ligand 19 production + by T cells + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 19 production by T cells. + meaning: OBI:0001775 + OBI:0001776: + title: assay measuring epitope specific chemokine (C-X-C motif) ligand 12 + production by T cells + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-X-C motif) ligand 12 production by T cells. + meaning: OBI:0001776 + OBI:0001777: + title: assay measuring epitope specific chemokine (C-C motif) ligand 22 production + by T cells + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 22 production by T cells. + meaning: OBI:0001777 + OBI:0001778: + title: assay measuring epitope specific chemokine (C-X-C motif) ligand 16 + production by T cells + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-X-C motif) ligand 16 production by T cells. + meaning: OBI:0001778 + OBI:0001779: + title: assay measuring epitope specific chemokine (C-X-C motif) ligand 13 + production by T cells + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-X-C motif) ligand 13 production by T cells. + meaning: OBI:0001779 + OBI:0001780: + title: ELISPOT assay measuring epitope specific macrophage inflammatory protein-1 + alpha production by T cells + description: An enzyme-linked immunospot assay that detects macrophage inflammatory + protein-1 alpha production by T cells. + meaning: OBI:0001780 + OBI:0001781: + title: cytometric bead array assay measuring epitope specific macrophage inflammatory + protein-1 gamma production by T cells + description: A cytometric bead array assay that detects macrophage inflammatory + protein-1 gamma production by T cells. + meaning: OBI:0001781 + OBI:0001782: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific macrophage inflammatory protein-1 gamma production + by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects macrophage inflammatory protein-1 gamma production by + T cells. + meaning: OBI:0001782 + OBI:0001783: + title: intracellular cytokine staining assay measuring epitope specific monocyte + chemotactic protein-1 production by T cells + description: A flow cytometry assay that detects monocyte chemotactic protein-1 + production by T cells. + meaning: OBI:0001783 + OBI:0001784: + title: ELISPOT assay measuring epitope specific monocyte chemotactic protein-1 + production by T cells + description: An enzyme-linked immunospot assay that detects monocyte chemotactic + protein-1 production by T cells. + meaning: OBI:0001784 + OBI:0001785: + title: intracellular cytokine staining assay measuring epitope specific macrophage + inflammatory protein-1 gamma production by T cells + description: A flow cytometry assay that detects macrophage inflammatory protein-1 + gamma production by T cells. + meaning: OBI:0001785 + OBI:0001786: + title: ELISPOT assay measuring epitope specific macrophage inflammatory protein-1 + gamma production by T cells + description: An enzyme-linked immunospot assay that detects inflammatory protein-1 + gamma production by T cells. + meaning: OBI:0001786 + OBI:0001787: + title: cytometric bead array assay measuring epitope specific vascular endothelial + growth factor production by T cells + description: A cytometric bead array assay that detects vascular endothelial + growth factor production by T cells. + meaning: OBI:0001787 + OBI:0001788: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific tumor necrosis factor superfamily cytokine production + by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects tumor necrosis factor superfamily cytokine production + by T cells. + meaning: OBI:0001788 + OBI:0001789: + title: intracellular cytokine staining assay measuring epitope specific RANTES + production by T cells + description: A flow cytometry assay that detects RANTES production by T cells. + meaning: OBI:0001789 + OBI:0001790: + title: ELISPOT assay measuring epitope specific RANTES production by T cells + description: An enzyme-linked immunospot assay that detects RANTES production + by T cells. + meaning: OBI:0001790 + OBI:0001791: + title: ELISPOT assay measuring epitope specific lymphotoxin A production by + T cells + description: An enzyme-linked immunospot assay that detects lymphotoxin A + production by T cells. + meaning: OBI:0001791 + OBI:0001792: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific macrophage inflammatory protein-1 alpha production + by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects macrophage inflammatory protein-1 alpha production by + T cells. + meaning: OBI:0001792 + OBI:0001793: + title: cytometric bead array assay measuring epitope specific lymphotoxin + A production by T cells + description: A cytometric bead array assay that detects lymphotoxin A production + by T cells. + meaning: OBI:0001793 + OBI:0001794: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific lymphotoxin A production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects lymphotoxin A production by T cells. + meaning: OBI:0001794 + OBI:0001795: + title: ELISPOT assay measuring epitope specific IP-10 production by T cells + description: An enzyme-linked immunospot assay that detects IP-10 production + by T cells. + meaning: OBI:0001795 + OBI:0001796: + title: intracellular cytokine staining assay measuring epitope specific IP-10 + production by T cells + description: A flow cytometry assay that detects IP-10 production by T cells. + meaning: OBI:0001796 + OBI:0001797: + title: ELISPOT assay measuring epitope specific interleukin-9 production by + T cells + description: An enzyme-linked immunospot assay that detects interleukin-9 + production by T cells. + meaning: OBI:0001797 + OBI:0001798: + title: intracellular cytokine staining assay measuring epitope specific interleukin-9 + production by T cells + description: A flow cytometry assay that detects interleukin-9 production + by T cells. + meaning: OBI:0001798 + OBI:0001799: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-9 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-9 production by T cells. + meaning: OBI:0001799 + OBI:0001800: + title: ELISPOT assay measuring epitope specific interleukin-8 production by + T cells + description: An enzyme-linked immunospot assay that detects interleukin-8 + production by T cells. + meaning: OBI:0001800 + OBI:0001801: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-8 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-8 production by T cells. + meaning: OBI:0001801 + OBI:0001802: + title: ELISPOT assay measuring epitope specific interleukin-3 production by + T cells + description: An enzyme-linked immunospot assay that detects interleukin-3 + production by T cells. + meaning: OBI:0001802 + OBI:0001803: + title: ELISA measuring epitope specific interleukin-7 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-7 + production by T cells. + meaning: OBI:0001803 + OBI:0001804: + title: ELISPOT assay measuring epitope specific interleukin-7 production by + T cells + description: An enzyme-linked immunospot assay that detects interleukin-7 + production by T cells. + meaning: OBI:0001804 + OBI:0001805: + title: intracellular cytokine staining assay measuring epitope specific interleukin-7 + production by T cells + description: A flow cytometry assay that detects interleukin-7 production + by T cells. + meaning: OBI:0001805 + OBI:0001806: + title: intracellular cytokine staining assay measuring epitope specific interleukin-27 + production by T cells + description: A flow cytometry assay that detects interleukin-27 production + by T cells. + meaning: OBI:0001806 + OBI:0001807: + title: cytometric bead array assay measuring epitope specific interleukin-3 + production by T cells + description: A cytometric bead array assay that detects interleukin-3 production + by T cells. + meaning: OBI:0001807 + OBI:0001808: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-3 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-3 production by T cells. + meaning: OBI:0001808 + OBI:0001809: + title: assay measuring epitope specific granzyme A release by T cells + description: A T cell epitope specific cytotoxic T cell degranulation assay + that detects granzyme A release by T cells. + meaning: OBI:0001809 + OBI:0001810: + title: assay measuring epitope specific granulysin release by T cells + description: A T cell epitope specific cytotoxic T cell degranulation assay + that detects granulysin release by T cells. + meaning: OBI:0001810 + OBI:0001811: + title: cytometric bead array assay measuring epitope specific interleukin-27 + production by T cells + description: A cytometric bead array assay that detects interleukin-27 production + by T cells. + meaning: OBI:0001811 + OBI:0001812: + title: intracellular cytokine staining assay measuring epitope specific interleukin-23 + production by T cells + description: A flow cytometry assay that detects interleukin-23 production + by T cells. + meaning: OBI:0001812 + OBI:0001813: + title: ELISPOT assay measuring epitope specific interleukin-27 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-27 + production by T cells. + meaning: OBI:0001813 + OBI:0001814: + title: ELISA measuring epitope specific interleukin-27 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-27 + production by T cells. + meaning: OBI:0001814 + OBI:0001815: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-18 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-18 production by T cells. + meaning: OBI:0001815 + OBI:0001817: + title: ELISPOT assay measuring epitope specific interleukin-18 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-18 + production by T cells. + meaning: OBI:0001817 + OBI:0001821: + title: ELISPOT assay measuring epitope specific interleukin-22 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-22 + production by T cells. + meaning: OBI:0001821 + OBI:0001822: + title: ELISPOT assay measuring epitope specific interleukin-23 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-23 + production by T cells. + meaning: OBI:0001822 + OBI:0001824: + title: intracellular cytokine staining assay measuring epitope specific interleukin-18 + production by T cells + description: A flow cytometry assay that detects interleukin-18 production + by T cells. + meaning: OBI:0001824 + OBI:0001826: + title: ELISPOT assay measuring epitope specific interleukin-21 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-21 + production by T cells. + meaning: OBI:0001826 + OBI:0001827: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 1 production by + T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 1 production by T cells. + meaning: OBI:0001827 + OBI:0001828: + title: cytometric bead array assay measuring epitope specific chemokine (C-C + motif) ligand 1 production by T cells + description: A cytometric bead array assay that detects chemokine (C-C motif) + ligand 1 production by T cells. + meaning: OBI:0001828 + OBI:0001829: + title: ELISPOT assay measuring epitope specific chemokine (C-C motif) ligand + 1 production by T cells + description: An enzyme-linked immunospot assay that detects chemokine (C-C + motif) ligand 1 production by T cells. + meaning: OBI:0001829 + OBI:0001830: + title: ELISPOT assay measuring epitope specific interleukin-17F production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-17F + production by T cells. + meaning: OBI:0001830 + OBI:0001831: + title: ELISA measuring epitope specific interleukin-17F production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-17F + production by T cells. + meaning: OBI:0001831 + OBI:0001832: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-17F production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-17F production by T cells. + meaning: OBI:0001832 + OBI:0001833: + title: ELISPOT assay measuring epitope specific interleukin-17A production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-17A + production by T cells. + meaning: OBI:0001833 + OBI:0001835: + title: cytometric bead array assay measuring epitope specific interleukin-18 + production by T cells + description: A cytometric bead array assay that detects interleukin-18 production + by T cells. + meaning: OBI:0001835 + OBI:0001836: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-16 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-16 production by T cells. + meaning: OBI:0001836 + OBI:0001837: + title: ELISA measuring epitope specific interleukin-16 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-16 + production by T cells. + meaning: OBI:0001837 + OBI:0001838: + title: ELISPOT assay measuring epitope specific interleukin-16 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-16 + production by T cells. + meaning: OBI:0001838 + OBI:0001839: + title: intracellular cytokine staining assay measuring epitope specific interleukin-16 + production by T cells + description: A flow cytometry assay that detects interleukin-16 production + by T cells. + meaning: OBI:0001839 + OBI:0001840: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-17A production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-17A production by T cells. + meaning: OBI:0001840 + OBI:0001841: + title: intracellular cytokine staining assay measuring epitope specific interleukin-1 + beta production by T cells + description: A flow cytometry assay that detects interleukin-1 beta production + by T cells. + meaning: OBI:0001841 + OBI:0001842: + title: ELISPOT assay measuring epitope specific interleukin-1 beta production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-1 + beta production by T cells. + meaning: OBI:0001842 + OBI:0001843: + title: detection of specific nucleic acids with complementary probes measuring + epitope specific interleukin-15 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-15 production by T cells. + meaning: OBI:0001843 + OBI:0001844: + title: ELISPOT assay measuring epitope specific interleukin-12 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-12 + production by T cells. + meaning: OBI:0001844 + OBI:0001845: + title: intracellular cytokine staining assay measuring epitope specific interleukin-15 + production by T cells + description: A flow cytometry assay that detects interleukin-15 production + by T cells. + meaning: OBI:0001845 + OBI:0001846: + title: ELISPOT assay measuring epitope specific interleukin-15 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-15 + production by T cells. + meaning: OBI:0001846 + OBI:0001848: + title: chromatin interaction analysis by paired-end tag sequencing assay + description: An assay that incorporates chromatin immunoprecipitation (ChIP)-based + enrichment, chromatin proximity ligation, Paired-End Tags, and high-throughput + sequencing to determine de novo long-range chromatin interactions genome-wide. + meaning: OBI:0001848 + OBI:0001849: + title: structural analysis by paired-end tag sequencing assay + description: An assay that incorporates Paired-End Tags and sequencing technology + to determine structural variants. + meaning: OBI:0001849 + OBI:0001850: + title: transcript analysis by paired-end tag sequencing assay + description: A transcription profiling by RNA sequencing assay that employs + paired-end sequencing of RNA transcripts to determine things such as gene + expression, gene structure, and alternative transcript structure. + meaning: OBI:0001850 + OBI:0001853: + title: DNase I hypersensitive sites sequencing assay + description: An assay that identifies the location of regulatory regions, + based on the genome-wide sequencing of regions super sensitive to cleavage + by DNase I. + meaning: OBI:0001853 + OBI:0001857: + title: RNP (ribonuclear particle) immunoprecipitation high- throughput sequencing + assay + description: An analyte assay that combines immunoprecipitation of an RNA-binding + protein and RNA-seq to identify mRNAs associated with selected RNA binding + proteins (RBPs). + meaning: OBI:0001857 + OBI:0001858: + title: cross-linking immunoprecipitation high-throughput sequencing assay + description: An analyte assay that employs UV-crosslinking between RNA and + a protein, followed by immunoprecipitation with antibodies for the protein, + fragmentation, and high-throughput screening for RNA sequences that interact + with a particular RNA-binding protein. + meaning: OBI:0001858 + OBI:0001859: + title: formaldehyde-assisted isolation of regulatory elements assay + description: An assay to determine the sequences of those DNA regions in the + genome associated with regulatory activity. + meaning: OBI:0001859 + OBI:0001861: + title: methylation-sensitive restriction enzyme sequencing assay + description: An assay that identifies unmethylated CpGs using methylation + sensitive restriction enzymes to fragment DNA. + meaning: OBI:0001861 + OBI:0001862: + title: reduced representation bisulfite sequencing assay + description: A bisulfite sequencing assay that identifies genomic methylation + patterns using a bisulfite based protocol that enriches CG-rich parts of + the genome. + meaning: OBI:0001862 + OBI:0001863: + title: shotgun bisulfite-seq assay + description: A bisulfite sequencing assay that identifies methylated cytosines + across the genome using high throughput sequencing. + meaning: OBI:0001863 + OBI:0001864: + title: RNA Annotation and Mapping of Promoters for the Analysis of Gene Expression + assay + description: A transcription profiling by RNA sequencing assay that identifies + transcription start sites (TSS), the quantification of their expression + and the characterization of their transcripts using high throughput sequencing. + meaning: OBI:0001864 + OBI:0001915: + title: DNA replication timing by array assay + description: An assay which quantifies the timing of DNA replication as a + function of genome position using array technology. + meaning: OBI:0001915 + OBI:0001918: + title: RNA-binding protein immunoprecipitation array profiling assay + description: An assay that combines immunoprecipitation of an RNA-binding + protein and array technology to identify mRNAs associated with selected + RNA binding proteins (RBPs). + meaning: OBI:0001918 + OBI:0001919: + title: Carbon-copy chromosome conformation capture assay + description: An assay that measures the organization of chromosomes at the + genome-wide scale. + meaning: OBI:0001919 + OBI:0001920: + title: DNA replication timing by sequencing assay + description: An assay in which timing of DNA replication is quantified as + a function of genome position based on genome-wide sequencing. + meaning: OBI:0001920 + OBI:0001921: + title: RNA-binding protein immunoprecipitation tiling array profiling assay + description: An RNA-binding protein immunoprecipitation array profiling assay + that combines immunoprecipitation of an RNA-binding protein and RNA tiling + array to identify mRNAs associated with selected RNA binding proteins (RBPs). + meaning: OBI:0001921 + OBI:0001922: + title: microRNA profiling by high throughput sequencing assay + description: A microRNA profiling assay that analyzes the microRNA component + of the transcriptome using high throughput sequencing technology. + meaning: OBI:0001922 + OBI:0001923: + title: protein sequencing by tandem mass spectrometry assay + description: A sequencing assay that detremines amino acid sequences of proteins + using multiple rounds of mass spectrometry and molecule fragmentation. + meaning: OBI:0001923 + OBI:0001924: + title: micrococcal nuclease digestion followed by high throughput sequencing + assay + description: An assay that identifies nucleosome positioning by genome wide + sequencing of regions sensitive to digestion by micrococal nuclease + meaning: OBI:0001924 + OBI:0001925: + title: chromatin immunoprecipitation with exonuclease sequencing assay + description: A ChIP-seq assay which uses immunoprecipitation to isolate protein + bound DNA followed by an exonuclease step to degrade DNA that is not protein + bound to provide greater resolution of the DNA binding site + meaning: OBI:0001925 + OBI:0001926: + title: microRNA profiling assay + description: A transcription profiling assay that quantifies the microRNA + species within a biological sample. + meaning: OBI:0001926 + OBI:0001954: + title: ChIP assay + description: An assay in which portions of chromatin, the ordered and organized + complex of DNA and its interaction partners that make up a chormosome, is + extracted and purified by immunoprecipitation with antibodies or tags, and + subsequently analyzed + meaning: OBI:0001954 + OBI:0001956: + title: assay using chromatin immunoprecipitation + description: An assay that produces data about protein-DNA interaction or + DNA epigenetic modification using immunoprecipitation + meaning: OBI:0001956 + OBI:0001960: + title: taxonomic diversity assessment by targeted gene survey + description: An assay that dteremines taxonomic and community diversity information + by sequencing specific genomic regions used as marker of identity or diversity. + meaning: OBI:0001960 + OBI:0001976: + title: hydrogen/deuterium exchange footprinting assay + description: A footprinting assay that uses a chemical reaction whereby a + covalently bonded hydrogen atom is replaced by a deuterium atom, or vice + versa in order to gather information about the solvent accessibility of + parts of a molecule and thus its tertiary structure. + meaning: OBI:0001976 + OBI:0001977: + title: cytometry assay + description: An assay that counts and/or measures characteristics of cells. + meaning: OBI:0001977 + OBI:0001978: + title: immunoblot assay + description: An analyte assay that detects specific molecules in an input + material by separating it using gel electrophoresis, transfering the separated + molecules to a membrane, and staining them with_ antibodies specific to + the analyte molecules. + meaning: OBI:0001978 + OBI:0001979: + title: fluorescence quenching binding assay + description: A binding assay in which the proximity of two entities is monitored + by measuring a fluorescent signal of one of the entities that gets reduced + if the two entities are cliose to each other. + meaning: OBI:0001979 + OBI:0001980: + title: in vivo intervention experiment + description: An assay in which the effect of a targeted process (the intervention) + on an organism is tested. + meaning: OBI:0001980 + OBI:0001981: + title: disease exacerbation in vivo intervention experiment + description: An in vivo intervention experiment that tests the ability of + the intervention to increase the severity of a disease in the host. + meaning: OBI:0001981 + OBI:0001982: + title: protection from challenge in vivo intervention experiment + description: An in vivo intervention experiment that tests the ability of + the intervention to prevent occurrence of a disease in a host. + meaning: OBI:0001982 + OBI:0001983: + title: tolerance induction intervention experiment + description: An in vivo intervention experiment that tests the ability of + the intervention to decrease an immune response. + meaning: OBI:0001983 + OBI:0001984: + title: treatment intervention experiment + description: An in vivo intervention experiment in which the ability of the + intervention to reduce or cure the effects of a disease are tested. + meaning: OBI:0001984 + OBI:0001985: + title: microarray assay + description: An analyte assay where binding of the analyte to immobilized + matrix is measured. + meaning: OBI:0001985 + OBI:0001986: + title: immunohistochemistry + description: An immunostaining assay to detect and potentially localize antigens + within the cells of a tissue section. + meaning: OBI:0001986 + OBI:0001987: + title: assay measuring the association constant [KA] of a MHC:ligand complex + description: A MHC binding constant determination assay measuring equilibrium + association constant (KA). + meaning: OBI:0001987 + OBI:0001988: + title: assay measuring the dissociation constant [KD] of a MHC:ligand complex + description: A MHC binding constant determination assay measuring equilibrium + dissociation constant (KD). + meaning: OBI:0001988 + OBI:0001989: + title: radioactivity detection assay measuring equilibrium dissociation constant + [KD] to determine competitive binding of a purified-MHC:ligand complex + description: A radioactivity detection assay that measures equilibrium dissociation + constant (KD) to detect the loss of binding of a known reference ligand + to purified-MHC due to competition by the ligand under investigation. + meaning: OBI:0001989 + OBI:0001990: + title: assay measuring the half life of a MHC:ligand complex + description: A MHC binding constant determination assay measuring half life + of binding. + meaning: OBI:0001990 + OBI:0001991: + title: assay measuring the half maximal effective concentration [EC50] of + a MHC:ligand complex + description: A MHC binding constant determination assay measuring half maximal + effective concentration (EC50). + meaning: OBI:0001991 + OBI:0001992: + title: assay measuring the half maximal inhibitory concentration [IC50] of + a MHC:ligand complex + description: A MHC binding constant determination assay measuring half maximal + inhibitory concentration (IC50). + meaning: OBI:0001992 + OBI:0001993: + title: assay measuring the off rate measurement [koff] of a MHC:ligand complex + description: A MHC binding constant determination assay measuring binding + off rate measurement data item (koff). + meaning: OBI:0001993 + OBI:0001994: + title: assay measuring the MHC ligand binding on rate [kon] of a MHC:ligand + complex + description: A MHC binding constant determination assay measuring binding + on rate (kon). + meaning: OBI:0001994 + OBI:0001995: + title: chromatography assay measuring the association constant [KA] of a B + cell epitope:antibody complex + description: An analytical chromatography assay that measures the association + constant [KA] of an antigen binding with an antibody. + meaning: OBI:0001995 + OBI:0001996: + title: chromatography assay measuring the dissociation constant [KD] of a + B cell epitope:antibody complex + description: An analytical chromatography assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0001996 + OBI:0001997: + title: hydrogen/deuterium exchange footprinting assay measuring binding of + a B cell epitope:antibody complex + description: A hydrogen/deuterium exchange footprinting assay that detects + the binding of an antigen with an antibody. + meaning: OBI:0001997 + OBI:0001998: + title: immunohistochemistry assay measuring binding of a B cell epitope:antibody + complex + description: A immunohistochemistry assay that detects the binding of an antigen + with an antibody. + meaning: OBI:0001998 + OBI:0001999: + title: 3D molecular structure determination assay of a T cell epitope:MHC:TCR + complex + description: A 3D structure determination of bound molecular complex assay + that characterizes the 3-dimensional structure of a T cell epitope:MHC:TCR + complex. + meaning: OBI:0001999 + OBI:0002014: + title: DNA methylation profiling by ChIP-chip assay + description: An epigenetic modification assay that identifies sites of DNA + methylation using ChIP-chip technologies. + meaning: OBI:0002014 + OBI:0002015: + title: transcription profiling by MPSS assay + description: A transcription profiling assay that uses Massive Parallel Signature + Sequencing (MPSS). + meaning: OBI:0002015 + OBI:0002016: + title: histone modification identification by ChIP-chip assay + description: An epigenetic modification assay that identifies regions containing + specific histones and their modifications using ChIP-chip techniques. + meaning: OBI:0002016 + OBI:0002017: + title: histone modification identification by ChIP-Seq assay + description: An epigenetic modification assay that identifies regions containing + specific histones and their modifications using ChIP-Seq techniques. + meaning: OBI:0002017 + OBI:0002018: + title: transcription factor binding site identification by ChIP-chip assay + description: A transcription factor binding site assay that utilizes ChIP-chip + technology. + meaning: OBI:0002018 + OBI:0002019: + title: transcription factor binding site identification by ChIP-Seq assay + description: A transcription factor binding site assay that utilizes ChIP-seq + technology. + meaning: OBI:0002019 + OBI:0002020: + title: epigenetic modification assay + description: An assay that identifies epigenetic modifications including histone + modifications, open chromatin, and DNA methylation. + meaning: OBI:0002020 + OBI:0002029: + title: serial analysis of gene expression assay + description: A transcription profiling by RNA sequencing assay that quantifies + RNA through creating short signature tags of the messages and ligating them + into a larger molecule that is then sequenced. + meaning: OBI:0002029 + OBI:0002030: + title: genotyping by tiling array assay + description: A genotyping by array assay that uses tiling array technology. + meaning: OBI:0002030 + OBI:0002031: + title: genotyping by SNP array assay + description: A genotyping by array assay that uses SNP array technology. + meaning: OBI:0002031 + OBI:0002032: + title: parallel analysis of RNA structure assay + description: A single-nucleotide-resolution nucleic acid structure mapping + assay that performs simultaneous in vitro profiling of the secondary structure + of thousands of RNA species at single nucleotide resolution using enzymatic + probing based on deep sequencing fragments of RNAs that were treated with + structure-specific enzymes + meaning: OBI:0002032 + OBI:0002033: + title: translation-associated transcript leader sequencing assay + description: A translation profiling assay that combines transcript leader + sequencing with polysome fractionation. TATL-seq works by applying TL-seq + across fractions of a polysome gradient, generating TL-specific translational + measurements to identify how different transcript leader sequences effect + translation. + meaning: OBI:0002033 + OBI:0002034: + title: transcript leader sequencing assay + description: A transcription profiling by RNA sequencing assay that combines + enzymatic capture of m(7)G-capped mRNA 5' ends with high-throughput sequencing. + meaning: OBI:0002034 + OBI:0002035: + title: peptide mass fingerprinting assay + description: A mass spectrometry assay that measures the absolute mass of + the cleaved peptides derived from an unknown protein of interest. These + masses are then compared to values for known protein sequences to identify + the unknown protein. + meaning: OBI:0002035 + OBI:0002036: + title: array based nucleic acid structure mapping assay + description: An assay which aims to provide information about the in vivo + organization/structure of nucleic acids using chemical or enzymatic probes + using a microarray. + meaning: OBI:0002036 + OBI:0002037: + title: micrococcal nuclease digestion followed by tiling array assay + description: An array based nucleic acid structure mapping assay that identifies + nucleosome positions genome wide, by detection of regions protected by nucleosomes + from digestion by micrococal nuclease using tiling array assays + meaning: OBI:0002037 + OBI:0002038: + title: ribosomal profiling by sequencing assay + description: A translation profiling assay that sequences only mRNA protected + by the ribosome during translation and thus provides information on which + transcipts are undergoing active translation. + meaning: OBI:0002038 + OBI:0002039: + title: assay for transposase-accessible chromatin using sequencing + description: An assay to capture the location of open chromatin, DNA-binding + proteins, individual nucleosomes and chromatin compaction at nucleotide + resolution by Tn5 transposase insertion. + meaning: OBI:0002039 + OBI:0002040: + title: chromatin isolation by RNA purification sequencing assay + description: A detection of specific nucleic acids with complementary probes + assay that measures regions of the genome which are bound by a specific + RNA (or a by a ribonucleoprotein containing the RNA of interest) using high-throughput + sequencing. + meaning: OBI:0002040 + OBI:0002041: + title: self-transcribing active regulatory region sequencing assay + description: An assay that identifies the sequences that act as transcriptional + enhancers in a direct, quantitative, and genome-wide manner from sheared + genomic DNA. + meaning: OBI:0002041 + OBI:0002042: + title: carbon-copy chromosome conformation capture assay followed by sequencing + assay + description: A carbon-copy chromosome conformation capture assay to analyze + the organization of chromosomes in an unbiased, genome-wide manner using + high throughput sequening following carbon-copy chromosome conformation + capture. + meaning: OBI:0002042 + OBI:0002043: + title: individual-nucleotide resolution cross-linking and immunoprecipitation + sequencing assay + description: A cross-linking immunoprecipitation high-throughput sequencing + assay that identifies protein-RNA interactions using UV light to covalently + bind proteins and RNA molecules, allowing for a very stringent purification + of the linked protein-RNA complexes. + meaning: OBI:0002043 + OBI:0002044: + title: RNA Bind-n-Seq assay + description: An assay that comprehensively characterizes sequence and structural + specificity of RNA binding proteins (RBPs). + meaning: OBI:0002044 + OBI:0002045: + title: polyA-site sequencing assay + description: A transcription profiling by RNA sequencing assay that quantitatively + profiles RNA polyadenylation at the transcriptome level. + meaning: OBI:0002045 + OBI:0002050: + title: 3D molecular structure determination assay of a MHC:ligand complex + description: A 3D structure determination of bound molecular complex assay + that characterizes the 3-dimensional structure of a MHC:ligand complex. + meaning: OBI:0002050 + OBI:0002051: + title: in vivo assay measuring B cell epitope specific protection from infectious + challenge based on pathogen burden + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge using pathogen burden. + meaning: OBI:0002051 + OBI:0002052: + title: in vivo assay measuring B cell epitope specific protection after tumor + burden challenge + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge using tumor burden. + meaning: OBI:0002052 + OBI:0002053: + title: microarray assay measuring binding of a B cell epitope:antibody complex + description: A microarray assay that detects the binding of an antigen with + an antibody. + meaning: OBI:0002053 + OBI:0002054: + title: NMR assay measuring the dissociation constant [KD] of a B cell epitope:antibody + complex + description: A B cell epitope equilibrium dissociation constant (KD) determination + assay that uses a nuclear magnetic resonance assay. + meaning: OBI:0002054 + OBI:0002055: + title: assay measuring biological activity resulting from T cell epitope:MHC:TCR + binding + description: A T cell epitope recognition assay that measures the immune response + process resulting from the binding of a T cell receptor to epitope or the + recongition of the epitope. + meaning: OBI:0002055 + OBI:0002056: + title: assay measuring epitope specific chemokine (C-C motif) ligand 17 production + by T cells + description: A T cell epitope specific cytokine production assay that detects + production of chemokine (C-C motif) ligand 17 production by T cells. + meaning: OBI:0002056 + OBI:0002057: + title: assay measuring epitope specific macrophage migration inhibitory factor + (MIF) production by T cells + description: A T cell epitope specific cytokine production assay that detects + macrophage migration inhibitory factor (MIF) production by T cells. + meaning: OBI:0002057 + OBI:0002058: + title: assay measuring epitope specific oncostatin M production by T cells + description: A T cell epitope specific cytokine production assay that detects + oncostatin M production by T cells. + meaning: OBI:0002058 + OBI:0002059: + title: assay measuring a binding constant of a T cell epitope:MHC:TCR complex + description: A T cell epitope recognition assay that quantitavely characterizes + the binding of a TCR with a ligand by determining a binding constant. + meaning: OBI:0002059 + OBI:0002060: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific chemokine (C-C motif) ligand 17 production by + T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects chemokine (C-C motif) ligand 17 production by T cells. + meaning: OBI:0002060 + OBI:0002061: + title: cytometric bead array assay measuring epitope specific chemokine (C-C + motif) ligand 22 production by T cells + description: A cytometric bead array assay that detects chemokine (C-C motif) + ligand 22 production by T cells. + meaning: OBI:0002061 + OBI:0002062: + title: in vitro assay measuring epitope specific T cell killing + description: An in vitro cell killing assay that measures the killing of antigen + presenting cells (APC) by T cells whose TCR recognizes an epitope presented + by the APC. + meaning: OBI:0002062 + OBI:0002063: + title: cytometric bead array assay measuring epitope specific granzyme A release + by T cells + description: A cytometric bead array assay that detects epitope specific granzyme + A release by T cells. + meaning: OBI:0002063 + OBI:0002064: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific granzyme A release by T cells + description: A detection of specific nucleic acids with complementary probes + assay that detects epitope specific granzyme A release by T cells. + meaning: OBI:0002064 + OBI:0002065: + title: cytometric bead array assay measuring epitope specific granzyme B release + by T cells + description: A cytometric bead array assay that detects epitope specific granzyme + B release by T cells. + meaning: OBI:0002065 + OBI:0002066: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific granzyme B release by T cells + description: A detection of specific nucleic acids with complementary probes + assay that detects epitope specific granzyme B release by T cells + meaning: OBI:0002066 + OBI:0002067: + title: cytometric bead array assay measuring epitope specific macrophage migration + inhibitory factor (MIF) production by T cells + description: A cytometric bead array assay that detects macrophage migration + inhibitory factor (MIF) production by T cells. + meaning: OBI:0002067 + OBI:0002068: + title: cytometric bead array assay measuring epitope specific oncostatin M + production by T cells + description: A cytometric bead array assay that detects oncostatin M production + by T cells. + meaning: OBI:0002068 + OBI:0002069: + title: ELISPOT assay measuring epitope specific perforin release by T cells + description: An enzyme-linked immunospot assay that detects epitope specific + perforin release by T cells. + meaning: OBI:0002069 + OBI:0002070: + title: in vivo assay measuring epitope specific proliferation of T cells + description: A T cell epitope specific proliferation assay that is performed + in vivo. + meaning: OBI:0002070 + OBI:0002071: + title: in vitro assay measuring epitope specific proliferation of T cells + description: A T cell epitope specific proliferation assay that is performed + on cells in vitro. + meaning: OBI:0002071 + OBI:0002072: + title: assay measuring qualitative binding of a MHC:ligand complex + description: An assay that detects the binding of a MHC molecule with a ligand, + and produces a qualitative measurement of the binding as an output. + meaning: OBI:0002072 + OBI:0002073: + title: in vivo assay measuring T cell epitope specific protection from challenge + description: An efficacy of T cell epitope intervention experiment that uses + a epitope protection experiment. + meaning: OBI:0002073 + OBI:0002074: + title: assay measuring T cell epitope specific suppression in vitro + description: T cell epitope dependent biological activity assay that detects + suppression of an in vitro response. + meaning: OBI:0002074 + OBI:0002075: + title: MHC ligand assay + description: An immune epitope assay that characterizes the structrue of a + MHC-ligand complex, or detects the processing and presentation of a ligand + by an antigen presenting cell, or the binding of a ligand to an MHC molecule. + meaning: OBI:0002075 + OBI:0002082: + title: reporter gene assay + description: An assay that detects expression of a reporter gene that was + inserted under the control of a regulatory sequence of interest. + meaning: OBI:0002082 + OBI:0002083: + title: enhancer activity detection by reporter gene assay + description: A reporter gene assay that detects expression of a reporter gene + that was inserted under the control of an enhancer of interest. + meaning: OBI:0002083 + OBI:0002084: + title: transcription cofactor activity region identification by ChIP-Seq assay + description: A ChIP-seq assay that identifies regions of chromatin bound to + a chromatin modifying protein, e.g. a histone acetyltransferase. + meaning: OBI:0002084 + OBI:0002085: + title: transcript expression location detection by hybridization chain reaction + assay + description: An in situ hybridization assay in which the location (e.g. anatomical/tissue) + of a transcript is detected by a multiplexed fluorescent in situ hybridization, + based on orthogonal amplification with hybridization chain reactions (HCR). + RNA probes complementary to mRNA targets trigger chain reactions in which + fluorophore-labeled RNA hairpins self-assemble into tethered fluorescent + amplification polymers. + meaning: OBI:0002085 + OBI:0002086: + title: Tet-assisted bisulfite sequencing assay + description: A bisulfite sequencing assay that identifies genomic methylation + patterns by using a bisulfite based protocol with the Tet enzyme to differentiate + 5-hydroxylmethylcytosine (5hmC) from 5-methylcytosine (5mC) through a step-wise + oxidative demethylation of 5mC, converting it to 5-carboxylcytosine (5caC) + while keeping 5hmC protected. + meaning: OBI:0002086 + OBI:0002094: + title: MethylC-Capture sequencing assay + description: A bisulfite sequencing assay in which a whole-genome sequencing + library is prepared, bisulfite converted and amplified, followed by a capture + enriching for targeted bisulfite-converted DNA fragments that are are subsequently + identified by DNA sequencing. + meaning: OBI:0002094 + OBI:0002096: + title: carboxyfluorescein succinimidyl ester staining assay measuring epitope + specific proliferation of T cells + description: A CFSE assay that detects T cell epitope specific proliferation + in vitro. + meaning: OBI:0002096 + OBI:0002097: + title: assay measuring the dissociation constant [KD] of a T cell epitope:MHC:TCR + complex + description: A T cell epitope binding constant determination assay that measures + the dissociation constant KD. + meaning: OBI:0002097 + OBI:0002098: + title: assay measuring the on rate [kon] of a T cell epitope:MHC:TCR complex + description: A T cell epitope binding constant determination assay that measures + the on rate. + meaning: OBI:0002098 + OBI:0002099: + title: assay measuring the off rate [koff] of a T cell epitope:MHC:TCR complex + description: A T cell epitope binding constant determination assay that measures + the off rate. + meaning: OBI:0002099 + OBI:0002100: + title: assay measuring the association constant [KA] of a T cell epitope:MHC:TCR + complex + description: A T cell epitope binding constant determination assay that measures + the association constant KA. + meaning: OBI:0002100 + OBI:0002101: + title: small-angle scattering assay determining the 3D structure of a B cell + epitope:antibody complex + description: A small-angle scattering 3D molecular structure determination + assay that characterizes the 3-dimensional molecular structure of a B cell + epitope:antibody complex + meaning: OBI:0002101 + OBI:0002102: + title: bio-layer interferometry assay measuring the on rate [kon] of a B cell + epitope:antibody complex + description: A bio-layer interferometry assay that measures the on rate of + an antigen with an antibody. + meaning: OBI:0002102 + OBI:0002103: + title: bio-layer interferometry assay measuring the off rate [koff] of a B + cell epitope:antibody complex + description: A bio-layer interferometry assay that measures the off rate of + an antigen with an antibody. + meaning: OBI:0002103 + OBI:0002104: + title: bio-layer interferometry assay measuring binding of a B cell epitope:antibody + complex + description: A bio-layer interferometry assay that detects the binding of + an antigen with an antibody. + meaning: OBI:0002104 + OBI:0002105: + title: bio-layer interferometry assay measuring the dissociation constant + [KD] of a B cell epitope:antibody complex + description: A bio-layer interferometry assay that measures the dissociation + constant [KD] of an antigen with an antibody. + meaning: OBI:0002105 + OBI:0002106: + title: carboxyfluorescein succinimidyl ester staining assay + description: An assay using carboxyfluorescein succinimidyl ester staining. + meaning: OBI:0002106 + OBI:0002107: + title: bio-layer interferometry assay + description: A binding assay that detects a shift in the interference pattern + reflected from a layer of immobilized material on the biosensor tip to measure + binding to- or dissociating from the material on the biosensor. + meaning: OBI:0002107 + OBI:0002108: + title: small-angle scattering 3D molecular structure determination assay + description: A 3D molecular structure determination assay in which the scattering + pattern of a neutron or x-ray beam targeted at a material entity is recorded + at small angles relative to the incident beam to determine the size, shape + and structure of the material entity examined. + meaning: OBI:0002108 + OBI:0002111: + title: enhanced cross-linking immunoprecipitation high-throughput sequencing + assay + description: An iCLIP assay that is enhanced to robustly identify protein-RNA + interactions with high efficiency through improvements in library preparation + of RNA fragments. + meaning: OBI:0002111 + OBI:0002112: + title: small RNA sequencing assay + description: A transcription profiling by RNA sequencing assay which is targeting + small RNA (< 200 bp) sequences such as, but not exclusive to, miRNAs using, + for example, small RNA library preparation kits. + meaning: OBI:0002112 + OBI:0002113: + title: bromouridine labeling and sequencing assay + description: A transcription profiling by RNA sequencing assay used to identify + spans of nascent transcription in the genome through isolation of recent + bromouridine (Bru) labelled RNAs. + meaning: OBI:0002113 + OBI:0002114: + title: bromouridine pulse-chase and sequencing assay + description: A transcription profiling by RNA sequencing assay used to identify + RNA populations of specific ages through isolation of RNAs first labelled + with bromouridine (Bru) followed by chasing in uridine for different periods + of time. + meaning: OBI:0002114 + OBI:0002115: + title: cytometry time of flight assay + description: A cytometry assay in which the presence of molecules of interest + on or in cells is indicated by binding of antibodies labeled with rare earth + element tags which are detected by time-of-flight mass spectrometry. + meaning: OBI:0002115 + OBI:0002116: + title: high performance liquid chromatography assay + description: An analytical chromatography assay that utilizes a high performance + liquid chromatography instrument for separation of compounts in a solution. + meaning: OBI:0002116 + OBI:0002117: + title: whole genome sequencing assay + description: A DNA sequencing assay that intends to provide information about + the sequence of an entire genome of an organism. + meaning: OBI:0002117 + OBI:0002118: + title: exome sequencing assay + description: A DNA sequencing assay that intends to provide information about + the sequence of the protein coding components of a genome (exons). + meaning: OBI:0002118 + OBI:0002119: + title: microscopy assay + description: An imaging assay that utilizes a microscope to magnify features + of the visualized material of interest that are not visible to naked eye. + meaning: OBI:0002119 + OBI:0002120: + title: mixed lymphocyte reaction assay + description: A cytometry assay where lymphocytes from two individuals are + co-cultured with the lymphocytes from one of the allogeneic individuals + (Responders) being labeled (with 3H Thymidine or BrdU) and the proliferation + of the labeled cells is measured, which is thought to reflect recognition + of histocompatibility antigens on the unlabeled cells (stimulators). + meaning: OBI:0002120 + OBI:0002121: + title: killer cell immunoglobulin-like receptor typing assay + description: A genotyping assay in which the alleles of genes encoding for + killer cell immunoglobulin-like receptors are determined. + meaning: OBI:0002121 + OBI:0002122: + title: major histocompatibility typing assay + description: A genotyping assay in which the alleles of genes encoding for + major histocompatibility complex molecules are determined. + meaning: OBI:0002122 + OBI:0002132: + title: pulse stable isotope labeling by amino acids in cell culture + description: An assay that detects differences in protein abundance using + samples that have been metabolically labeled in vivo with a stable non-radioactive + heavy isotope containing amino acid for a short period of time. After diluting + the pulsed cells into growth media without label, high resolution mass spectrometry-based + proteomics is used to analyze the time-dependent decay and determine protein + stability. + meaning: OBI:0002132 + OBI:0002133: + title: cytometric bead array assay measuring epitope specific chemokine (C-C + motif) ligand 20 production by T cells + description: A cytometric bead array assay that detects chemokine (C-C motif) + ligand 20 production by T cells. + meaning: OBI:0002133 + OBI:0002134: + title: assay measuring epitope specific chemokine (C-C motif) ligand 20 production + by T cells + description: A T cell epitope specific cytokine production assay that detects + chemokine (C-C motif) ligand 20 production by T cells. + meaning: OBI:0002134 + OBI:0002140: + title: temperature measurement assay + description: An assay to determine the temperature of an evaluant. + meaning: OBI:0002140 + OBI:0002141: + title: volume measurement assay + description: An assay to determine the volume of an evaluant. + meaning: OBI:0002141 + OBI:0002142: + title: Nanostring nCounter miRNA expression assay + description: A microRNA profiling assay using digital molecular barcoding + technology to quantify target microRNA molecules without the need for amplification. + meaning: OBI:0002142 + OBI:0002143: + title: bromouride labeling and sequencing after UV exposure + description: A transcription profiling by RNA sequencing assay used to identify + transcription start sites and active enhancer elements through isolation + of bromouridine (Bru) labelled RNAs after UV light exposure introduces transcription-blocking + lesions. + meaning: OBI:0002143 + OBI:0002144: + title: extrachromosomal circular DNA sequencing assay + description: An assay which aims at identifying the endogenous population + of extrachromosomal circular DNA originating from a subset of genomic loci + and potentially having profound consequences on the regulatory and coding + capabilities of these regions. The assay includes creation of a library + out of the circular DNA molecules and subsequent sequencing using parallelized + sequencing methods. + meaning: OBI:0002144 + OBI:0002145: + title: antigen specific antibodies assay + description: An analyte assay that measures the presence or amount of antibodies + to a specified antigen. + meaning: OBI:0002145 + OBI:0002146: + title: HIV antibody assay + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to human immunodeficiency virus (HIV) antigens. + meaning: OBI:0002146 + OBI:0002147: + title: HIV group O antibody assay + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to human immunodeficiency virus (HIV) group O antigens. + meaning: OBI:0002147 + OBI:0002148: + title: surface HBV antibody assay + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to hepatitis B virus (HBV) surface antigens. + meaning: OBI:0002148 + OBI:0002149: + title: core HBV antibody assay + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to hepatitis B virus (HBV) core antigens. + meaning: OBI:0002149 + OBI:0002150: + title: core HBV IgM antibody assay + description: An antigen specific antibodies assay that is meant to detectimmunoglobulin + M (IgM) antibodies that bind to hepatitis B virus (HBV) core antigens. + meaning: OBI:0002150 + OBI:0002151: + title: HCV antibody assay + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to Hepacivirus C (HCV) antigens. + meaning: OBI:0002151 + OBI:0002152: + title: EBV IgG antibody assay + description: An antigen specific antibodies assay that is meant to detect + immunoglobulin G (IgG) antibodies that bind to Epstein-Barr virus (EBV) + antigens. + meaning: OBI:0002152 + OBI:0002153: + title: EBV IgM antibody assay + description: An antigen specific antibodies assay that is meant to detect + immunoglobulin M (IgM) antibodies that bind to Epstein-Barr virus (EBV) + antigens. + meaning: OBI:0002153 + OBI:0002154: + title: CMV antibody assay + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to cytomegalovirus (CMV) antigens. + meaning: OBI:0002154 + OBI:0002155: + title: venereal disease research laboratory test + description: An analyte assay that is meant to detect general antibodies that + react with substances that are produced by cellular damage caused by Treponema + pallidum indicating a syphilis infection. VDRL tests require a microscope + and can be done on cerebrospinal fluid as well as blood. + meaning: OBI:0002155 + OBI:0002156: + title: rapid plasma reagin test + description: An analyte assay that is meant to detect with the aid of carbon + or charcoal particles general antibodies that react with substances that + are produced by cellular damage caused by Treponema pallidum indicating + a syphilis infection. RPR tests can be done without a microscope. + meaning: OBI:0002156 + OBI:0002157: + title: HBV surface antigen assay + description: An analyte assay that is meant to detect hepatitis B virus (HBV) + surface antigens. + meaning: OBI:0002157 + OBI:0002158: + title: HIV-1 nucleic acid testing + description: An analyte assay that is meant to detect human immunodeficiency + virus (HIV-1) nucleic acids. + meaning: OBI:0002158 + OBI:0002159: + title: HCV nucleic acid testing + description: An analyte assay that is meant to detect hepatitis C virus (HCV) + nucleic acids. + meaning: OBI:0002159 + OBI:0002160: + title: multiplexed indexed T7 ChIP-seq assay + description: A ChIP-seq assay which leverages T7 promoter amplification to + allow low sample input and chromatin barcoding and pool-and-split multiplexing + for high-throughput, quantitative profiling of chromatin states. + meaning: OBI:0002160 + OBI:0002161: + title: systematic evolution of ligands by exponential enrichment assay + description: A binding assay that identifies protein-binding sites on nucleic + acids by selecting high-affinity target ligands from a randomized pool. + The process is repeated in rounds, then the bound nucleic acids are separated + from the unbound nucleic acids and amplified by PCR._ + meaning: OBI:0002161 + OBI:0002162: + title: footprinting assay + description: An assay that measures ligand binding and conformational changes + by the solvent accessibility of the backbone, bases, or side-chain structures + of macromolecules through their sensitivity to chemical or enzymatic cleavage + or modification reactions. + meaning: OBI:0002162 + OBI:0002163: + title: DNAse footprinting assay + description: An enzymatic footprinting assay that determines protein-binding + sites on DNA by identifying bound fragments that are protected from DNAse + I-catalyzed hydrolysis + meaning: OBI:0002163 + OBI:0002164: + title: mammalian 2-hybrid assay + description: A binding assay that increases the expression of a reporter gene + in mammalian cells by proteins of interest attached to two portions of the + transcriptional activator, bringing those portions closer together. + meaning: OBI:0002164 + OBI:0002165: + title: protein localization assay + description: An assay that determines the specific location of a protein. + Subcellular localization is distinguished from tissue-based localization + based on the type of microscopy applied. + meaning: OBI:0002165 + OBI:0002166: + title: tissue-based protein localization assay + description: A protein localization assay that determines the specific location + of a protein in a living tissue sample. + meaning: OBI:0002166 + OBI:0002167: + title: subcellular protein localization assay + description: A protein localization assay that determines the specific subcellular + location of a protein. The location is visualized through electron microscopy. + meaning: OBI:0002167 + OBI:0002168: + title: subcellular protein immunohistochemistry assay + description: An immunohistochemistry assay that uses antibodies to display + the specific subcellular location of proteins. + meaning: OBI:0002168 + OBI:0002169: + title: ChIP-qPCR assay + description: A ChIP assay that uses quantitative PCR to determine levels of + specific DNA in immunoprecipitated samples. + meaning: OBI:0002169 + OBI:0002170: + title: genomic SELEX + description: A systematic evolution of ligands by exponential enrichment assay + that starts with a library derived from genomic DNA instead of synthetically + derived random DNA molecules. + meaning: OBI:0002170 + OBI:0002171: + title: dot blot assay + description: An analyte assay that detects molecules in a mixture dotted on + a membrane using DNA probes or antibodies. + meaning: OBI:0002171 + OBI:0002172: + title: Northwestern blot assay + description: A direct binding assay that detects interactions of labeled RNA + with immobilized protein on a membrane. + meaning: OBI:0002172 + OBI:0002173: + title: Southwestern blot assay + description: A direct binding assay that detects interactions of labeled DNA + with immobilized protein on a membrane. + meaning: OBI:0002173 + OBI:0002174: + title: immunocytochemistry + description: An immuno staining assay in which samples of intact cells are + examined that have had most, if not all, of their surrounding extracellular + matrix removed + meaning: OBI:0002174 + OBI:0002175: + title: ATP bioluminescence assay + description: An analyte assay that detects ATP concentration through light + intensity when luciferase catalyzes the oxidation of luciferin in the presence + of ATP, magnesium ions, and molecular oxygen. + meaning: OBI:0002175 + OBI:0002176: + title: electrophysiology assay + description: An assay that measures the electrical properties of biological + cells or tissues. Typically, this assay will generate measurements of voltage + changes or electric current (or other associated variables such as impedence + or capacitance). + meaning: OBI:0002176 + OBI:0002177: + title: patch clamp assay + description: An intracellular electrophysiology assay where a glass micropipette + is sealed to the surface of the cell membrane as a recording electrode to + study ion channel activity. The key distinction of this technique is the + electrical resistance of the seal between the cell membrane and the pipette + is of the order 10-100 gigaohms, permitting high-resolution current measurements + over the cell membrane in several different standard configurations. + meaning: OBI:0002177 + OBI:0002178: + title: whole-cell patch clamp assay + description: A patch-clamp assay where the electrode is left in place on the + cell, as in cell-attached recordings, but the membrane patch has been perforated, + providing access from the interior of the pipette to the intracellular space + of the cell. Measurements made with this technique involve recording currents + through multiple channels simultaneously, over the membrane of the entire + cell. + meaning: OBI:0002178 + OBI:0002179: + title: cell-attached patch clamp assay + description: A patch-clamp assay where the electrode is left in place on the + cell, and the membrane patch has been left intact been perforated. This + maintains the separation of the interior of the pipette to the intracellular + space of the cell. Measurements made with this technique involve recording + currents through multiple channels simultaneously, over the membrane of + the entire cell. + meaning: OBI:0002179 + OBI:0002180: + title: inside-out patch clamp assay + description: A patch-clamp assay where a patch of the membrane is attached + to the patch pipette, detached from the rest of the cell, and the cytosolic + surface of the membrane is exposed to the external media, or bath. This + provides the experimenter has access to the intracellular surface of the + membrane via the bath and can manipulate the environment at the intracellular + surface of single ion channels. For example, channels that are activated + by intracellular ligands can then be studied through a range of ligand concentrations. + meaning: OBI:0002180 + OBI:0002181: + title: outside-out patch clamp assay + description: A patch-clamp assay where a patch of the membrane is attached + to the patch pipette. In this configuration, the external surface of the + cell membrane is exposed as the outside of the membrane patch relative to + the patch electrode. An outside-out patch starts with a gigaohm seal in + a whole-cell recording configuration. The electrode is slowly withdrawn + from the cell, until a fragment of membrane bulges away from the cell, which + detaches and reforms as a convex membrane on the end of the electrode, with + the original external surface of the membrane facing outward from the electrode. + This provides the experimenter with access to the extracellular surface + of the membrane via the bath and can manipulate the environment at the extracellular + surface of single ion channels. + meaning: OBI:0002181 + OBI:0002182: + title: voltage clamp assay + description: An cellular electrophysiology assay where the membrane potential + of a cell is controlled by the experimentalist. This is accomplished through + a feedback mechanism where any change in membrane potential is countered + by permitting electrical current to flow into or out of the cell. + meaning: OBI:0002182 + OBI:0002183: + title: two electrode voltage clamp assay + description: The two electrode voltage clamp (TEVC) method utilizes two low-resistance + pipettes, one sensing voltage and the other injecting current. The microelectrodes + are filled with conductive solution and inserted into the cell to artificially + control membrane potential. The membrane acts as a dielectric as well as + a resistor, while the fluids on either side of the membrane function as + capacitors.[9] The microelectrodes compare the membrane potential against + a command voltage, giving an accurate reproduction of the currents flowing + across the membrane. Current readings can be used to analyze the electrical + response of the cell to different applications. This technique is mainly + used in the Oocyte preparation. + meaning: OBI:0002183 + OBI:0002184: + title: cut open oocyte voltage clamp assay + description: The cut-open oocyte Vaseline gap (COVG) voltage-clamp technique + is designed to solve weaknesses in the two elextrode voltage clamp by maximizing + the benefits of the Xenopus oocyte expression system by improving on clamp + speed, signal-to-noise ratio, and ability to effectively perfuse the oocyte. + In this way, it was possible to combine the most popular transient expression + system, and the associated benefits of molecular cloning and site-directed + mutagenesis, with the superior voltage-clamp properties of cut-open cell + techniques. + meaning: OBI:0002184 + OBI:0002185: + title: current clamp assay + description: The current clamp technique records the membrane potential by + injecting current into a cell through the recording electrode. Unlike in + the voltage clamp mode, where the membrane potential is held at a level + determined by the experimenter, in "current clamp" mode the membrane potential + is free to vary, and the amplifier records whatever voltage the cell generates + on its own or as a result of stimulation. This technique is used to study + how a cell responds when electric current enters a cell; this is important + for instance for understanding how neurons respond to neurotransmitters + that act by opening membrane ion channels. + meaning: OBI:0002185 + OBI:0002186: + title: electroencephalography + description: An extracellular electrophysiology assay where electrodes are + mounted outside the brain (either on the surface of the scalp on onto the + brain surface itself during surgery) to measure the electrical field over + the external surface. + meaning: OBI:0002186 + OBI:0002187: + title: single-unit recording + description: An extracellular electrophysiology assay where a single microelectrode + is placed in close proximity to a single neuron to measure voltage and current + changes over time. This is the technicque used by Hubel and Wiesel to measure + firing properties of primary visual cortex neurons in the 1950s in their + original Nobel-prize winning study. A classic, old technique. + meaning: OBI:0002187 + OBI:0002188: + title: multi-unit recording + description: An extracellular electrophysiology assay where a collection of + microelectrodes (often in an 'array' configuration) is placed into neural + tissue to measure the distribution of voltage and current changes for a + population of cells over time. + meaning: OBI:0002188 + OBI:0002189: + title: local field potential recording + description: An extracellular electrophysiology assay where a microelectrode + is placed in the extracellular space of brain tissue to measure action potential + and compared to an electrode either outside or inside that tissue. + meaning: OBI:0002189 + OBI:0002436: + title: RNA interactome capture + description: An assay that identifies RNA binding proteins by cross-linking + RNA and proteins with UV light, then purifying the bound complexes by oligo(dT) + capture. Finally, the complexes are analyzed by mass spectrometry. + meaning: OBI:0002436 + OBI:0002437: + title: widefield microscopy assay + description: A fluorescence microscopy technique where the specimen under + investigation is fully bathed in light, as opposed to confocal microscopy + in which only a small portion of the specimen is illuminated. + meaning: OBI:0002437 + OBI:0002438: + title: nuclear ligation assay + description: An assay that detects the proximity of chromosomal DNA through + the use of a ligation reaction in isolated nuclei. + meaning: OBI:0002438 + OBI:0002439: + title: chromosome conformation capture assay + description: A nuclear ligation assay that detects chromosomal interactions + between any two genomic loci. Chromatin segments are cross-linked, cut by + restriction enzymes, ligated, and finally analyzed by PCR. + meaning: OBI:0002439 + OBI:0002440: + title: Hi-C assay + description: A chromosome conformation capture assay that detects genome-wide + chromosomal interactions. High-throughput techniques are used to sequence + the ligated fragments after cross-linking and cutting with restriction enzymes. + meaning: OBI:0002440 + OBI:0002441: + title: physical examination of an organism + description: An assay that produces a description of the qualities of an organism + that has not been transformed, through observation and physical, non-invasive + techniques. + meaning: OBI:0002441 + OBI:0002442: + title: hydroxyl-radical footprinting assay + description: A footprinting assay that uses the reaction of hydroxyl radicals + with side-chain sites in molecules (proteins, DNA, etc)_ with the resultant + mass shift demonstrating the site of modification, used to_ to asses the + accessibility of that site. + meaning: OBI:0002442 + OBI:0002443: + title: methidiumpropyl-EDTA-iron(II) footprinting assay + description: A footprinting assay that determines protein-binding sites on + DNA by partial cleavage of ligand-protected DNA restriction fragments with + methidium-propyl-EDTA (MPE). MPE-Fe(II) in the presence of oxygen efficiently + catalyzes the non-specific clevage of DNA. + meaning: OBI:0002443 + OBI:0002445: + title: transcription start site mapping by primer extension assay + description: A transcription profiling assay in which the transcription start + site for a gene is determined by identifying the 5' end of mRNA. A radio-labeled + primer is annealed to a complementary mRNA sequence near the 3' end, then + cDNA is synthesized until the 5' end is reached. + meaning: OBI:0002445 + OBI:0002449: + title: footprinting assay measuring binding of a B cell epitope:antibody complex + description: A footprinting assay that detects the binding of an antigen with + an antibody. + meaning: OBI:0002449 + OBI:0002450: + title: hydroxyl-radical footprinting assay measuring binding of a B cell epitope:antibody + complex + description: A hydroxyl-radical footprinting assay that detects the binding + of an antigen with an antibody. + meaning: OBI:0002450 + OBI:0002451: + title: ELISA measuring epitope specific interferon-alpha production by T cells + description: An enzyme-linked immunosorbent assay that detects interferon-alpha + production by T cells. + meaning: OBI:0002451 + OBI:0002452: + title: assay measuring epitope specific interferon-alpha production by T cells + description: A T cell epitope specific cytokine production assay that detects + interferon-alpha production by T cells. + meaning: OBI:0002452 + OBI:0002457: + title: precision nuclear run-on sequencing assay + description: A transcription profiling by RNA sequencing assay that maps the + genome-wide distribution of transcriptionally-engaged Pol II at base-pair + resolution by using biotin-labeled ribonucleotide triphosphate analogs (biotin-NTP) + for nuclear run-on reactions, allowing the efficient affinity purification + of nascent RNAs for high throughput sequencing from their 3' ends. + meaning: OBI:0002457 + OBI:0002458: + title: chromosome conformation capture-on-chip assay + description: A nuclear ligation assay which uses cross-linking of proteins + to proteins and DNA, followed by two rounds of digestion and ligation, inverse + PCR, and characterization by microarray or DNA sequencing. This enables + unbiased genome-wide screens for DNA contacts made by single genomic sites + of interest. + meaning: OBI:0002458 + OBI:0002459: + title: genotype phasing by Hi-C assay + description: A genotyping assay in which carbon-copy chromosome conformation + is used to detect polymorphism in DNA samples. + meaning: OBI:0002459 + OBI:0002485: + title: transcript analysis by single-end sequencing assay + description: A sequencing assay that incorporates single-end reads and sequencing + technology to determine transcripts, gene structures, and gene expressions. + meaning: OBI:0002485 + OBI:0002489: + title: differential medium assay + description: An organism detection assay that uses a differential medium to + achieve its objective. + meaning: OBI:0002489 + OBI:0002564: + title: histopathology assay + description: A histological assay that is intended to check for the presence + or level of a specific disease. + meaning: OBI:0002564 + OBI:0002571: + title: polyA-selected RNA sequencing assay + description: A transcription profiling by RNA sequencing assay to study transcriptomes + through the enrichment of polyadenylated transcripts or removal of ribosomal + RNA prior to high-throughput sequencing. + meaning: OBI:0002571 + OBI:0002572: + title: polyA-depleted RNA sequencing assay + description: A transcription profiling by RNA sequencing assay to study non-polyadenylated + transcripts, such as, but not exclusive to unspliced and circular isoforms, + through the depletion of polyadenylated transcripts prior to high-throughput + sequencing. + meaning: OBI:0002572 + OBI:0002575: + title: isoform sequencing + description: A transcription profiling by RNA sequencing assay for sequencing + isoforms by enriching a cDNA library for full-length reads spanning entire + transcript isoforms. + meaning: OBI:0002575 + OBI:0002597: + title: chromosome conformation capture sequencing assay + description: A chromosome conformation capture-on-chip assay quantitates the + products with multiplexed high-throughput sequencing. + meaning: OBI:0002597 + OBI:0002621: + title: reconstitution assay + description: An assay in which a cellular process is replicated from the bottom-up + using isolated components in order to observe how the components work together. + meaning: OBI:0002621 + OBI:0002622: + title: in vitro transcription reconstitution assay + description: A reconstitution assay in which RNA synthesis is investigated + using RNA polymerase II transcription systems replicated in vitro from their + base components. + meaning: OBI:0002622 + OBI:0002623: + title: whole metagenome sequencing assay + description: A DNA sequencing assay that intends to provide information on + the DNA sequences of multiple genomes (a metagenome) from different organisms + present in the same input sample. + meaning: OBI:0002623 + OBI:0002628: + title: RNAi knockdown assay + description: A gene knockdown assay in which RNAi gene knockdown is used to + disrupt gene transcripts. + meaning: OBI:0002628 + OBI:0002629: + title: direct RNA sequencing assay + description: An assay to study transcription through direct RNA sequence determination, + without prior conversion of RNA molecules to cDNA. + meaning: OBI:0002629 + OBI:0002631: + title: single-cell transcription profiling by RNA sequencing assay + description: A transcription profiling by RNA sequencing assay that uses as + input RNA extracts that can be traced to a single cell of origin. These + extracts may come from the entire cell or only a part of the cell such as + the nucleus or the cytoplasm. + meaning: OBI:0002631 + OBI:0002634: + title: in vivo assay measuring B cell epitope specific disease exacerbation + resulting from the adoptive transfer of epitope specific antibodies or B + cells + description: An efficacy of B cell epitope intervention experiment that uses + a disease exacerbation in vivo intervention experiment after adoptive transfer + of epitope specific antibodies or B cells. + meaning: OBI:0002634 + OBI:0002635: + title: in vivo assay measuring T cell epitope specific disease reduction resulting + from the adoptive transfer of epitope specific T cells + description: An efficacy of T cell epitope intervention experiment that detects + a decrease in disease after adoptive transfer of epitope specfic T cells. + meaning: OBI:0002635 + OBI:0002636: + title: in vivo assay measuring B cell epitope specific disease reduction resulting + from adoptive transfer of epitope specific antibodies or B cells + description: An efficacy of B cell epitope intervention experiment that detects + a decrease in disease after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0002636 + OBI:0002637: + title: in vivo assay measuring T cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific T cells + description: An efficacy of T cell epitope intervention experiment that uses + a epitope protection experiment after adoptive transfer of epitope specfic + T cells. + meaning: OBI:0002637 + OBI:0002638: + title: in vivo assay measuring B cell epitope specific protection from challenge + resulting from adoptive transfer of epitope specific antibodies or B cells + description: An efficacy of B cell epitope intervention experiment that uses + a epitope protection experiment after adoptive transfer of epitope specific + antibodies or B cells. + meaning: OBI:0002638 + OBI:0002639: + title: in vivo assay measuring T cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific T cells based on + pathogen burden + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge resulting from the adoptive transfer of epitope + specific antibodies or B cells using pathogen burden. + meaning: OBI:0002639 + OBI:0002640: + title: in vivo assay measuring B cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific antibodies or B + cells based on pathogen burden + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge resulting from the adoptive transfer of epitope + specific antibodies or B cells using pathogen burden. + meaning: OBI:0002640 + OBI:0002641: + title: in vivo assay measuring T cell epitope specific protection from other + challenge resulting from the adoptive transfer of epitope specific T cells + based on survival + description: An in vivo assay measuring T cell epitope specific protection + from other challenge resulting from the adoptive transfer of epitope specific + T cells using survival. + meaning: OBI:0002641 + OBI:0002642: + title: in vivo assay measuring B cell epitope specific protection from other + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells based on survival + description: An in vivo assay measuring B cell epitope specific protection + from other challenge resulting from the adoptive transfer of epitope specific + antibodies or B cells using survival. + meaning: OBI:0002642 + OBI:0002643: + title: in vivo assay measuring T cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific T cells based on + tumor burden + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge resulting from the adoptive transfer of epitope specific + T cells using tumor burden. + meaning: OBI:0002643 + OBI:0002644: + title: in vivo assay measuring B cell epitope specific protection from challenge + resulting from the adoptive transfer of epitope specific antibodies or B + cells based on tumor burden + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge resulting from the adoptive transfer of epitope specific + antibodies or B cells using tumor burden. + meaning: OBI:0002644 + OBI:0002645: + title: in vivo assay measuring T cell epitope specific tolerance induction + resulting from the adoptive transfer of epitope specific T cells + description: An efficacy of T cell epitope intervention experiment that uses + a tolerance induction intervention experiment after adoptive transfer of + epitope specfic T cells. + meaning: OBI:0002645 + OBI:0002646: + title: in vivo assay measuring B cell epitope specific tolerance induction + resulting from the adoptive transfer of epitope specific antibodies or B + cells + description: An efficacy of B cell epitope intervention experiment that uses + a tolerance induction intervention experiment after adoptive transfer of + epitope specific antibodies or B cells. + meaning: OBI:0002646 + OBI:0002647: + title: Giemsa stain assay + description: An assay that uses a Giemsa stain to characterize cells. + meaning: OBI:0002647 + OBI:0002649: + title: blood microbiology assay + description: An organism detection assay that detects microorganisms in a + blood specimen. + meaning: OBI:0002649 + OBI:0002664: + title: cytometric bead array assay measuring epitope specific interleukin-15 + production by T cells + description: A cytometric bead array assay that detects interleukin-15 production + by T cells. + meaning: OBI:0002664 + OBI:0002665: + title: cytometric bead array assay measuring epitope specific interleukin-16 + production by T cells + description: A cytometric bead array assay that detects interleukin-16 production + by T cells. + meaning: OBI:0002665 + OBI:0002666: + title: in vivo assay measuring B cell epitope specific induction of hypersensitivity + resulting from the adoptive transfer of epitope specific antibodies or B + cells + description: An efficacy of B cell epitope intervention experiment that detects + a hypersensitivity response by monitoring skin reactions after adoptive + transfer of epitope specific antibodies or B cells. + meaning: OBI:0002666 + OBI:0002667: + title: in vivo skin test assay measuring T cell epitope specific type IV hypersensitivity + resulting from the adoptive transfer of epitope specific T cells + description: An efficacy of T cell epitope intervention experiment that detects + epitope specific type IV hypersensitivity after adoptive transfer of epitope + specfic T cells. + meaning: OBI:0002667 + OBI:0002668: + title: in vivo assay measuring epitope specific proliferation of T cells resulting + from the adoptive transfer of epitope specific T cells + description: A T cell epitope specific proliferation assay that is performed + in vivo after adoptive transfer of epitope specfic T cells. + meaning: OBI:0002668 + OBI:0002669: + title: assay measuring epitope specific helper T cell enhancement of a B cell + mediated immune response resulting from the adoptive transfer of epitope + specific T cells + description: A T cell epitope specific helper activity assay that detects + the ability of a T cell epitope to enhance an antibody response after adoptive + transfer of epitope specfic T cells. + meaning: OBI:0002669 + OBI:0002670: + title: assay measuring epitope specific helper T cell enhancement of a T cell + mediated immune response resulting from the adoptive transfer of epitope + specific T cells + description: A T cell epitope specific helper activity assay that detects + the ability of a T cell epitope to enhance a T cell response after adoptive + transfer of epitope specfic T cells. + meaning: OBI:0002670 + OBI:0002671: + title: in vivo assay measuring epitope specific T cell killing resulting from + the adoptive transfer of epitope specific T cells + description: An in vivo cell killing assay that detects the killing of an + antigen presenting cell (APC) by a T cell whose TCR recognizes an epitope + presented by the APC after adoptive transfer of epitope specific T cells. + meaning: OBI:0002671 + OBI:0002672: + title: ELISA measuring epitope specific perforin release by T cells + description: An enzyme-linked immunosorbent assay that detects epitope specific + perforin release by T cells. + meaning: OBI:0002672 + OBI:0002675: + title: massively parallel reporter assay + description: An assay in which multiplexing the construction and interrogation + of larger libraries of reporter constructs allows measurement of the transcriptional + regulatory activities of thousands to hundreds of thousands of DNA sequences. + meaning: OBI:0002675 + OBI:0002676: + title: in vivo assay measuring a T cell epitope specific response after adoptive + transfer of epitope specific T cells + description: An efficacy of T cell epitope intervention experiment that is + performed after adoptive transfer of epitope specfic T cells. + meaning: OBI:0002676 + OBI:0002677: + title: in vivo assay measuring a B cell epitope specific response after adoptive + transfer of epitope specific antibodies or B cells + description: An efficacy of B cell epitope intervention experiment that is + performed after adoptive transfer of epitope specific antibodies or B cells. + meaning: OBI:0002677 + OBI:0002678: + title: in vivo assay measuring T cell epitope specific disease exacerbation + resulting from the adoptive transfer of epitope specific T cells + description: An efficacy of T cell epitope intervention experiment that uses + a disease exacerbation in vivo intervention experiment after adoptive transfer + of epitope specfic T cells. + meaning: OBI:0002678 + OBI:0002680: + title: pseudovirus entry assay + description: An assay that measures the entry in target cells of reporter + viral particles that express an envelope protein of a different virus of + interest. + meaning: OBI:0002680 + OBI:0002692: + title: polymerase chain reaction assay + description: An assay that uses polymerase chain reaction technique to amplify + DNA. + meaning: OBI:0002692 + OBI:0002693: + title: restriction fragment length polymorphism assay + description: An assay that uses digestion of DNA with specific restriction + enzymes followed by gel electropheresis to detect differences in the sizes + of the generated fragments that are due to genetic differences (polymorphisms) + in homologous sequences. + meaning: OBI:0002693 + OBI:0002694: + title: DNA fingerprinting assay + description: An assay to identify a specific individual organism from a DNA + specimen by looking at unique patterns in their DNA. + meaning: OBI:0002694 + OBI:0002695: + title: insecticide resistance assay + description: An assay that aims to detect the presence and/or frequency of + resistance to insecticides in an organism or organism population. + meaning: OBI:0002695 + OBI:0002696: + title: insecticide resistance by monitoring known mutations assay + description: An insecticide resistance assay that detects, in a population, + presence and frequency of mutant alleles for previously characterized mutations + with insecticide resistance phenotypes. + meaning: OBI:0002696 + OBI:0002697: + title: insecticide resistance by detecting enzyme activity assay + description: An insecticide resistance assay that is based on determination + the catalytic activity of an enzyme associated with insecticide resistance + phenotypes. + meaning: OBI:0002697 + OBI:0002698: + title: insecticide resistance bioassay + description: An insecticide resistance assay that is typically conducted to + measure the effects of a substance on a living organism. + meaning: OBI:0002698 + OBI:0002699: + title: insecticide resistance by detecting alpha esterase activity assay + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of alpha esterase. + meaning: OBI:0002699 + OBI:0002700: + title: insecticide resistance by detecting beta esterase activity assay + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of beta esterase. + meaning: OBI:0002700 + OBI:0002701: + title: insecticide resistance by detecting acetylcholinesterase activity assay + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of acetylcholinesterase. + meaning: OBI:0002701 + OBI:0002702: + title: insecticide resistance by detecting glutathione S-transferase activity + assay + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of glutathione S-transferase (GST). + meaning: OBI:0002702 + OBI:0002703: + title: insecticide resistance by detecting carboxylic ester hydrolase activity + assay + description: An insecticide resistance by detecting enzyme activity assay + that measures activity of carboxylic ester hydrolase using p-nitrophenyl + acetate as a substrate. + meaning: OBI:0002703 + OBI:0002704: + title: insecticide resistance by detecting mixed-function oxidase assay + description: An insecticide resistance by detecting enzyme activity assay + that measures whether mixed-function oxidase activity present. + meaning: OBI:0002704 + OBI:0002705: + title: direct insecticide resistance bioassay + description: An insecticide resistance bioassay without the use of any synergist. + meaning: OBI:0002705 + OBI:0002706: + title: topical application insecticide resistance bioassay + description: An insecticide resistance bioassay by adding insecticide directly + to the thorax of the insect. + meaning: OBI:0002706 + OBI:0002707: + title: direct insecticide resistance diagnostic assay + description: A direct insecticide resistance assay that at preset insecticide + dosage scoring mortality to determine resistance of a population. + meaning: OBI:0002707 + OBI:0002708: + title: insecticide resistance dose response assay + description: A direct insecticide resistance assay in which an insect population + is exposed to a range of insecticide dosage scoring mortality to determine + resistance. + meaning: OBI:0002708 + OBI:0002709: + title: insecticide resistance time response assay + description: A direct insecticide resistance assay to determine resistance + as a consequence of the time of exposure to insecticide. + meaning: OBI:0002709 + OBI:0002710: + title: Centre for Disease Control and Prevention bottle bioassay + description: A direct insecticide resistance diagnostic assay performs in + a glass bottle coated with insecticides for detecting resistance to insecticides + in vector populations. + meaning: OBI:0002710 + OBI:0002711: + title: WHO cone kit diagnostic assay + description: A direct insecticide resistance diagnostic assay uses WHO cone + kit. + meaning: OBI:0002711 + OBI:0002712: + title: WHO paper kit diagnostic assay + description: A direct insecticide resistance diagnostic assay uses WHO paper + kit. + meaning: OBI:0002712 + OBI:0002713: + title: WHO larvicide diagnostic assay + description: A direct insecticide resistance diagnostic assay tests survival + of larvae in a medium supplemented with insecticide. + meaning: OBI:0002713 + OBI:0002714: + title: insecticide resistance dose response by bottle assay + description: An insecticide resistance dose response assay that performs in + a glass bottle coated with insecticides. + meaning: OBI:0002714 + OBI:0002715: + title: insecticide resistance dose response by survival of larvae assay + description: An insecticide resistance dose response assay that tests survival + of larvae in a medium supplemented with insecticide. + meaning: OBI:0002715 + OBI:0002716: + title: insecticide resistance dose response by WHO paper kit assay + description: An insecticide resistance dose response assay using WHO paper + kit. + meaning: OBI:0002716 + OBI:0002717: + title: insecticide resistance time response by bottle assay + description: An insecticide resistance time response assay that is performed + in a glass bottle coated with insecticides, with the presence of a synergist. + meaning: OBI:0002717 + OBI:0002718: + title: insecticide resistance time response by WHO paper kit assay + description: An insecticide resistance time response assay using WHO paper + kit, with the presence of a synergist. + meaning: OBI:0002718 + OBI:0002719: + title: insecticide resistance by amplification refractory mutation system + assay + description: An insecticide resistance by monitoring known mutations assay + that detects any mutation involving single base changes or small deletions + using amplification refractory mutation system (ARMS). The ARMS is based + on the use of sequence-specific PCR primers that allow amplification of + test DNA only when the target allele is contained within the sample. Following + an ARMS reaction the presence or absence of a PCR product is diagnostic + for the presence or absence of the target allele. It can be used to analyze + human genomic DNA for one or more mutations. + meaning: OBI:0002719 + OBI:0002720: + title: insecticide resistance by primer introduced restriction analysis PCR + assay + description: An insecticide resistance by monitoring known mutations assay + that detects Single Nucleotide Polymorphisms (SNPs) using PCR technique + and mismatched primers that is close to the mutation of interest and digested + the PCR productions using restriction enzymes. + meaning: OBI:0002720 + OBI:0002721: + title: insecticide resistance by nested polymerase chain reaction assay + description: An insecticide resistance by monitoring known mutations assay + that detects gene mutation based on nested polymerase chain reaction technique. + meaning: OBI:0002721 + OBI:0002722: + title: insecticide resistance by ligase detection reaction assay + description: An insecticide resistance assay that is based on monitoring known + mutations using ligase detection reaction exquisitely discriminate between + a mismatched and complementary DNA helix. + meaning: OBI:0002722 + OBI:0002723: + title: insecticide resistance by ligase detection reaction-fluorescent microsphere + assay + description: An insecticide resistance by ligase detection reaction assay + that uses fluorescently labeled conserved probes in ligase detection reaction. + meaning: OBI:0002723 + OBI:0002724: + title: insecticide resistance by PCR amplification of specific alleles assay + description: An insecticide resistance assay that is based on monitoring known + mutations by PCR amplification of specific alleles to detect polymorphic + or mutant alleles. + meaning: OBI:0002724 + OBI:0002725: + title: insecticide resistance by fluorogenic PCR assay + description: An insecticide resistance assay that is based on monitoring known + mutations by PCR technique that uses target specific probes labeled with + fluorogenic chromophores to detect gene mutation. + meaning: OBI:0002725 + OBI:0002726: + title: insecticide resistance by PCR-RFLP assay + description: An insecticide resistance by monitoring known mutations assay + based on restriction fragment length polymorphism assay. + meaning: OBI:0002726 + OBI:0002727: + title: insecticide resistance by short interspersed elements PCR assay + description: An insecticide resistance assay that is based on monitoring known + mutations by PCR amplification of short interspersed elements (SINEs). + meaning: OBI:0002727 + OBI:0002728: + title: pathogen detection assay + description: An organism detection assay that detects pathogens. + meaning: OBI:0002728 + OBI:0002729: + title: VectorTest assay + description: A pathogen detection assay that identifies the presence or absence + of specific peptide epitopes of circumsporozoite (CS) protein of the most + important Plasmodium falciparum and two strains (variants 210 and 247) of + the more widespread Plasmodium vivax using a dipstick wicking test strip. + meaning: OBI:0002729 + OBI:0002730: + title: pathogen detection by Rapid Analyte Measurement Platform assay + description: A pathogen detection assay that is based on Rapid Analyte Measurement + Platform (RAMP) technology to quantify immunologically active substances. + meaning: OBI:0002730 + OBI:0002731: + title: pathogen detection by loop-mediated isothermal amplification assay + description: A pathogen detection assay that is based on loop-mediated isothermal + amplification. + meaning: OBI:0002731 + OBI:0002732: + title: blood meal assay + description: An assay that analyzes the specimen taken from blood meal fed + organism, such as insect. + meaning: OBI:0002732 + OBI:0002733: + title: blood meal by counter current immunoelectrophoresis assay + description: A blood meal assay that uses a counter current immunoelectrophoresis + technique. + meaning: OBI:0002733 + OBI:0002734: + title: DNA based blood meal finger printing assay + description: A DNA fingerprinting assay that uses DNA extracted from blood + meal fed organism, such as insect. + meaning: OBI:0002734 + OBI:0002735: + title: organism detection by size assay + description: An organism detection assay that is based on the size of organism. + meaning: OBI:0002735 + OBI:0002736: + title: organism detection by cross mating assay + description: An organism detection assay that is based on genetic crossings + between specimens collected in the field to determine whether fertile progeny + is produced. + meaning: OBI:0002736 + OBI:0002737: + title: organism detection by cytological chromosome examination assay + description: An organism detection assay that is based on analysis of polytene + chromosomes through cytological examination of the banding pattern of the + species. + meaning: OBI:0002737 + OBI:0002738: + title: organism detection by isoenzyme electrophoresis assay + description: An organism detection assay that is based on electrophoresis + to determine the isozymes that are present in a specific population to determine + the species. + meaning: OBI:0002738 + OBI:0002739: + title: organism detection by morphological examination assay + description: An organism detection assay that is based on examination of morphology + and the use of specific taxonomic keys to determine the species of the specimen. + meaning: OBI:0002739 + OBI:0002740: + title: organism detection by PCR assay + description: An organism detection assay that is based on PCR. + meaning: OBI:0002740 + OBI:0002741: + title: organism detection by specific DNA hybridization assay + description: An organism detection assay that is based on DNA hybrdization. + meaning: OBI:0002741 + OBI:0002742: + title: organism detection by salinity tolerance assay + description: An organism detection assay of mosquito species that is on the + basis of mosquito survival depending on the salt concentration in the water + used to lay their eggs to differentiate between morphologically very similar + species. + meaning: OBI:0002742 + OBI:0002753: + title: PRO-cap + description: Precision nuclear run-on and sequencing to detect Pol II initiation + sites + meaning: OBI:0002753 + OBI:0002759: + title: ribosomal RNA-depleted RNA sequencing assay + description: A transcription profiling by RNA sequencing assay in which highly + abundant ribosomal RNAs are removed from total RNA before sequencing, resulting + in more efficient transcript/gene detection. + meaning: OBI:0002759 + OBI:0002760: + title: metatranscriptome profiling assay + description: A transcription profiling by RNA sequencing assay that determines + the RNA sequence of microbial transcripts from a microbioal community of + mixed species from a given microbiome. + meaning: OBI:0002760 + OBI:0002761: + title: lipid profiling assay + description: An analyte assay assay that detects and identifies lipids resulting + from biochemical and cellular metabolism. + meaning: OBI:0002761 + OBI:0002762: + title: single-nucleus ATAC-seq + description: An ATAC-seq assay in which single nuclei are isolated from frozen + tissue samples, through a protocol designed to maximally preserve nucleus + integrity during sample processing and optimize transposase-mediated fragmentation + of chromatin in individual nuclei. + meaning: OBI:0002762 + OBI:0002763: + title: 16s ribosomal gene sequencing assay + description: An amplicon sequencing assay in which the amplicon is derived + from universal primers used to amplify the 16S ribosomal RNA gene from isolate + bacterial genomic DNA or metagenomic DNA from a microbioal community. Resulting + sequences are compared to reference 16S sequence databases to identify or + classify bacteria present within a given sample. + meaning: OBI:0002763 + OBI:0002764: + title: single-cell ATAC-seq + description: An ATAC assay designed to robustly map the accessible genome + of individual cells, using sequencing integrated into a programmable microfluidics + platform, in order to provide insights into cell-to-cell variation in accessibility + profiles. + meaning: OBI:0002764 + OBI:0002765: + title: microbiome protein expression profiling assay + description: A protein expression profiling assay of microbial proteins extracted + from a microbioal community of mixed species from a given microbiome. + meaning: OBI:0002765 + OBI:0002766: + title: cytokine assay + description: An analyte assay to study presence, concentration, or amount + of cytokines. + meaning: OBI:0002766 + OBI:0002767: + title: amplicon sequencing assay + description: A sequencing assay in which a DNA or RNA input molecule is amplified + by PCR and the product sequenced. + meaning: OBI:0002767 + OBI:0002768: + title: whole virome sequencing assay + description: A whole metagenome sequencing assay that intends to provide information + on multiple genome sequences from different viruses present in the same + input sample. + meaning: OBI:0002768 + OBI:0002773: + title: single-value binding of antibody with reporter to antigen assay + description: An assay that detects the linking of antigens and antibodies + via special signaling mechanisms, such as EIA, ELISA, chemiluminescence, + etc. that produces one measure (quantitative or qualitative) of the analyte + of interest + meaning: OBI:0002773 + OBI:0002946: + title: fluorescence imaging-based apoptosis assay + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures associated with molecular processes + of apoptosis. + meaning: OBI:0002946 + OBI:0002947: + title: fluorescence imaging-based cell proliferation assay + description: A type of cell proliferation assay in which fluorescent dyes + are ued to label and detect proteins or structures that can be used to count + cells. + meaning: OBI:0002947 + OBI:0002948: + title: fluorescence imaging-based cell cycle state assay + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures associated with particular cell + cycle states. + meaning: OBI:0002948 + OBI:0002949: + title: fluorescence imaging-based cell viability assay + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures associated with cell viability. + meaning: OBI:0002949 + OBI:0002950: + title: fluorescence imaging-based drug synergy assay + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures to determine if drugs applied + to cells in combination have a greater effect together than the sum of their + separate effects. + meaning: OBI:0002950 + OBI:0002951: + title: fluorescence imaging-based cell morphology assay + description: A type of cytometry assay in which fluorescent dyes are used + to label and detect proteins or structures in order to determine cell morphology. + meaning: OBI:0002951 + OBI:0002952: + title: fluorescence imaging multiplex cytological profiling + description: A type of cytometry assay in which fluorescent dyes are used + to stain seven major cellular components followed by automatic image capture + and analysis which extracts shape, texture, and intensity parameters. + meaning: OBI:0002952 + OBI:0002953: + title: protein state assay + description: A type of assay that measures the quantity and/or identity of + proteins in their modficied and unmodified states where modifications include + phosphorylation, methylation, acetylation, etc. + meaning: OBI:0002953 + OBI:0002954: + title: fluorescence imaging-based protein phosphorylation state assay + description: A type of protein state assay that employs high-throughput microscopy + to measure levels of proteins in different phosphorylation states. + meaning: OBI:0002954 + OBI:0002955: + title: mass spectrometry-based protein state assay + description: A type of protein state assay that employs mass spectrometry + to measure levels of proteins in different phosphorylation states. + meaning: OBI:0002955 + OBI:0002956: + title: targeted, drug-modulated, mass spectrometry-based protein phoshporylation-state + assay + description: A type of mass spectrometry protein state assay that measures + levels of a targeted set of proteins in different phosphorylation states + in response to drug perturbations. + meaning: OBI:0002956 + OBI:0002957: + title: reverse phase protein array profiling assay + description: A type of protein state assay where tissue or cell samples are + lysed and then spotted onto a slide which is probed with antibodies specific + to proteins with and without post-translational modifications. + meaning: OBI:0002957 + OBI:0002958: + title: SWATH-MS protein profiling assay + description: A type of mass spectrometry assay using a data-independent acquisition + method to identify target peptides. + meaning: OBI:0002958 + OBI:0002959: + title: tandem mass tag mass spectrometry assay + description: A type of tandem mass spectrometry where isotopomer labels are + employed for accurate quantification and identification of specific proteins. + meaning: OBI:0002959 + OBI:0002960: + title: fluorescence imaging-based reporter gene assay + description: A type of reporter gene assay that employs fluorescence imaging + to detect a reporter gene's expression. + meaning: OBI:0002960 + OBI:0002961: + title: global chromatin profiling by mass spectrometry assay + description: A type of epigenetic modification assay that employs targeted + quantitative mass spectrometry to profile modifications of the core histones + of chromatin. + meaning: OBI:0002961 + OBI:0002962: + title: kinase inhibitor assay + description: A type of assay that identifies compounds that inhibit the activity + of kinases. + meaning: OBI:0002962 + OBI:0002963: + title: KINOMEscan assay + description: A type of proprietary kinase inhibitor assay that and employs + a panel of kinases against which one can test compounds for their selectivity + and potency in interactions with kinases, without the need to add ATP to + the reactions. + meaning: OBI:0002963 + OBI:0002964: + title: KiNativ assay + description: A type of proprietary in situ kinase inhibitor assay that employs + biotinylated acyl phosphates of ATP and ADP. + meaning: OBI:0002964 + OBI:0002965: + title: landmark transcript profiling assay + description: A type of transcription profiling assay in which a set of landmark + transcripts that have been determined to provide a comprehensive profile + of cell activity, plus numerous steady-state controls, are assayed via ligation-mediated + amplification followed by capture on fluorescently labeled microspheres + followed by detection of fluorescence. + meaning: OBI:0002965 + OBI:0002966: + title: microenvironment microarray assay + description: A type of cytometry assay where cells are incubated for three + days with a standardized set of extracellular matrix proteins in combination + with various ligands creating varying microenvironment perterbations for + the cells. Immunofluorescent imaging of cells is used to measure features + such as morphology, metabolism, cell cycle, and nuclear activity. + meaning: OBI:0002966 + OBI:0002967: + title: microwestern meso-scale quantitative western blot assay + description: A western blot assay that provides a high-throughput, sensitive, + and quantitative measurement of proteins from numerous samples via an array + of small western blots on a single sheet of nitrocellulose. + meaning: OBI:0002967 + OBI:0002968: + title: positive/negative ion switching metabolite profiling assay + description: A type of metabolic profiling assay which employs a hybrid dual + quadrupole linear ion trap mass spectrometer for steady-state profiling + of endogenous polar metabolites from organic extractions from biological + samples. + meaning: OBI:0002968 + OBI:0002969: + title: cyclic immunofluoroescence assay + description: A type of microscopy assay resulting in highly multiplexed immunofluorescence + imaging through sequential rounds of imaging followed by fluorophore inactivation. + meaning: OBI:0002969 + OBI:0002970: + title: multiplex bead-based protein state immunoassay + description: A type of protein state assay in which antibodies attached to + different colored beads and fluorescent reporter dye labels are used in + a multiplexed mixture to assay for proteins in specific states. + meaning: OBI:0002970 + OBI:0002984: + title: capture Hi-C assay + description: A Hi-C assay in which a selection step is performed on ligated + fragments in order to enrich for ligation products containing specific regions + of interest. + meaning: OBI:0002984 + OBI:0002985: + title: magnetic resonance imaging assay + description: An imaging assay in which nuclear magnetic resonance is used + to produce information about the interior structure and composition of an + input material entity. + meaning: OBI:0002985 + OBI:0002986: + title: computed tomography imaging assay + description: An imaging assay that uses a series of X-ray images to produce + information about the interior structure and composition of an input material + entity. + meaning: OBI:0002986 + OBI:0002987: + title: positron emission tomography imaging assay + description: An imaging assay in which positron-emitting radionuclides are + used to visualize functional processes of an input material entity. + meaning: OBI:0002987 + OBI:0002990: + title: T cell receptor repertoire sequencing assay + description: A sequencing assay that determines the sequences of DNA or RNA + molecules that encode the repertoire of T cell receptors within an input + sample. + meaning: OBI:0002990 + OBI:0002991: + title: B cell receptor repertoire sequencing assay + description: A sequencing assay that determines the sequence of a DNA or RNA + molecules that encode the repertoire of B cell receptors within an input + sample. + meaning: OBI:0002991 + OBI:0003009: + title: ferritin assay + description: An assay that measures ferritin + meaning: OBI:0003009 + OBI:0003010: + title: fibrinogen assay + description: An assay that measures fibrinogen + meaning: OBI:0003010 + OBI:0003011: + title: iron assay + description: An analyte assay that measures the abundance of iron + meaning: OBI:0003011 + OBI:0003012: + title: ionized calcium assay + description: An analyte assay that measures the abundance of ionized calcium + meaning: OBI:0003012 + OBI:0003013: + title: transferrin assay + description: An analyte assay that measures the abundance of transferrin + meaning: OBI:0003013 + OBI:0003014: + title: uric acid assay + description: An analyte assay that measures the abundance of uric acid + meaning: OBI:0003014 + OBI:0003015: + title: globulin assay + description: An analyte assay that measures the abundance of globulin + meaning: OBI:0003015 + OBI:0003016: + title: myelocyte assay + description: A cytometry assay that measures the abundance and/or characteristics + of myelocytes + meaning: OBI:0003016 + OBI:0003017: + title: metamyelocyte assay + description: A cytometry assay that measures the abundance and/or characteristics + of metamyelocytes + meaning: OBI:0003017 + OBI:0003018: + title: hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + meaning: OBI:0003018 + OBI:0003019: + title: promyelocyte assay + description: A cytometry assay that measures the abundance and/or characteristics + of promyelocytes + meaning: OBI:0003019 + OBI:0003021: + title: basophil assay + description: A cytometry assay that measures the abundance and/or characteristics + of basophils + meaning: OBI:0003021 + OBI:0003022: + title: neutrophil assay + description: A cytometry assay that measures the abundance and/or characteristics + of neutrophils + meaning: OBI:0003022 + OBI:0003023: + title: eosinophil assay + description: A cytometry assay that measures the abundance and/or characteristics + of eosinophils + meaning: OBI:0003023 + OBI:0003024: + title: lymphocyte assay + description: A cytometry assay that measures the abundance and/or characteristics + of lymphocytes + meaning: OBI:0003024 + OBI:0003025: + title: monocyte assay + description: A cytometry assay that measures the abundance and/or characteristics + of monocytes + meaning: OBI:0003025 + OBI:0003026: + title: reticulocyte assay + description: A cytometry assay that measures the abundance and/or characteristics + of reticulocytes + meaning: OBI:0003026 + OBI:0003027: + title: macrophage assay + description: A cytometry assay that measures the abundance and/or characteristics + of macrophages + meaning: OBI:0003027 + OBI:0003028: + title: platelet assay + description: A cytometry assay that measures the abundance and/or characteristics + of platelets + meaning: OBI:0003028 + OBI:0003031: + title: fluorogenic PCR assay + description: A polymerase chain reaction assay that uses target specific probes + labeled with fluorogenic chromophores. + meaning: OBI:0003031 + OBI:0003032: + title: genotyping by PCR assay + description: A genotyping assay that uses polymerase chain reaction. + meaning: OBI:0003032 + OBI:0003033: + title: cleavage under targets and release using nuclease assay + description: A type of DNA sequencing assay employing in situ chromatin profiling + in which antibody-targeted controlled cleavage by micrococcal nuclease releases + specific protein-DNA complexes into the the supernatant for sequencing. + meaning: OBI:0003033 + OBI:0003034: + title: cleavage under targets and tagmentation + description: A type of DNA sequencing assay employing in situ chromatin profiling + in which a chromatin protein is bound in situ by a specific antibody, which + then tethers to a protein A-Tn5 hyperactive transposase fusion protein (pA-Tn5) + loaded with sequence adapters. Activation of pA-Tn5 results in factor-targeted + tagmentation, generating fragments ready for PCR enrichment and DNA sequencing. + meaning: OBI:0003034 + OBI:0003035: + title: coma severity assay + description: A physical examination of an organism that has the objective + to determine the severity of coma in a patient. + meaning: OBI:0003035 + OBI:0003036: + title: Plasmodium gametocyte detection assay + description: An assay that detects Plasmodium gametocytes in a specimen. + meaning: OBI:0003036 + OBI:0003037: + title: malaria rapid diagnosis assay + description: An assay that is quick and easy in the diagnosis of malaria by + detecting evidence of malaria parasites (antigens) in human blood. + meaning: OBI:0003037 + OBI:0003038: + title: parasite detection assay + description: An assay that detects parasite in a specimen. + meaning: OBI:0003038 + OBI:0003039: + title: feces microbiology assay + description: An organism detection assay that detects microorganisms in a + feces specimen. + meaning: OBI:0003039 + OBI:0003040: + title: blood assay + description: An assay that has a blood specimen as evaulant. + meaning: OBI:0003040 + OBI:0003041: + title: falcivax rapid diagnostic test + description: A parasite detection assay that can quickly establish the diagnosis + of P. falciparum or P. vivax malaria infection by detecting the antigens + in a person's blood. + meaning: OBI:0003041 + OBI:0003042: + title: optimal-IT rapid diagnostic test + description: A parasite detection assay that is rapid, sensitive, and able + to differentiate between P. falciparum and other malaria parasites. + meaning: OBI:0003042 + OBI:0003043: + title: urine assay + description: An assay that has a urine specimen as evaluant. + meaning: OBI:0003043 + OBI:0003044: + title: parasite species identification by PCR assay + description: A parasite detection by PCR assay that identifies the species + of parasite. + meaning: OBI:0003044 + OBI:0003045: + title: parasite detection by PCR assay + description: A parasite detection assay that uses PCR. + meaning: OBI:0003045 + OBI:0003080: + title: organismal body temperature measurement assay + description: An assay that detects body temperature of an organism. + meaning: OBI:0003080 + OBI:0003087: + title: autofluorescence assay + description: A fluorescence detection assay in which the light that is naturally + emitted by a sample is visualized after excitation of the sample with light + at a suitable wavelength. + meaning: OBI:0003087 + OBI:0003088: + title: autofluorescence microscopy assay + description: An autofluorescence assay in which the light that is naturally + emitted by a sample is visualized via microscopy after excitation of the + sample with light at a suitable wavelength. + meaning: OBI:0003088 + OBI:0003089: + title: bulk assay for transposase-accessible chromatin using sequencing + description: An assay for transposase-accessible chromatin using sequencing + in which the sample that is sequenced is derived from a collection of cells, + such as a tissue sample or entire cell culture, and therefore provides results + representative of the aggregate of sample cells. + meaning: OBI:0003089 + OBI:0003090: + title: bulk RNA-seq assay + description: A transcription profiling by RNA sequencing assay in which the + sample that is sequenced is derived from a collection of cells, such as + a tissue sample or entire cell culture, and therefore provides results representative + of the aggregate of sample cells. + meaning: OBI:0003090 + OBI:0003091: + title: multiplexed fluorescent antibody imaging assay + description: An imaging assay in which multiple cycles consisting of fluorescent + labeling, imaging, and fluorophor deactivation are used to detect multiple + proteins and their locations in a given sample of tissues or cells. + meaning: OBI:0003091 + OBI:0003092: + title: Cell DIVE multiplexed imaging assay + description: A multiplexed fluorescent antibody imaging assay that involves + an iterative staining, imaging and dye inactivation workflow for over 60 + biomarkers on a single fixed tissue section. + meaning: OBI:0003092 + OBI:0003093: + title: co-detection by indexing assay + description: A multiplexed fluorescent antibody imaging assay that involves + a highly multiplexed analysis of up to 40 proteins in a tissue using cyclic + detection of DNA-indexed antibody panels. + meaning: OBI:0003093 + OBI:0003094: + title: fluorescence in-situ hybridization assay + description: An in-situ hybridization assay in which fluorescently labeled + molecules are used to localize specific DNA or RNA sequences. + meaning: OBI:0003094 + OBI:0003095: + title: decoding amplified targeted transcripts with fluorescence in situ hybridization + assay + description: A fluorescence in-situ hybridization assay which involves multiplex + in situ digital quantification of targeted RNA transcripts in fresh or frozen + tissue providing an understanding of the spatial organization of different + cell types. + meaning: OBI:0003095 + OBI:0003096: + title: imaging mass cytometry assay + description: A cytometry time of flight assay in which molecules of interest + on or in cells are imaged through a system in which samples are labeled + with multiple different rare-earth tagged antibodies. The sample is then + ablated with a laser and the labeled material is detected by cytometry time + of flight mass spectrometry. + meaning: OBI:0003096 + OBI:0003097: + title: liquid chromatography mass spectrometry assay + description: A mass spectrometry assay where a sample mixture is first separated + by liquid chromatography before being converted into ions which are characterized + by using mass spectrometry based on their mass-to-charge ratio and relative + abundance. + meaning: OBI:0003097 + OBI:0003098: + title: lightsheet fluorescence microscopy assay + description: A fluorescence microscopy that involves capturing of photons + emitted by fluorophores excited with a thin sheet of laser light in a sample + only in a relatively narrow plane by a detection objective oriented perpendicularly + to the light sheet and imaged onto a detection device such as a CCD camera. + meaning: OBI:0003098 + OBI:0003099: + title: matrix assisted laser desorption ionization imaging mass spectrometry + assay + description: A mass spectrometry assay that involves collection of spatially + resolved mass spectra of a sample during microscopy where a pulse laser + is used to produce both ionisation and vaporization. The sample is held + in a matrix (such as dihydrobenzoic acid) to protect it from direct laser + illumination and to separate the sample molecules. The spectra are used + to visualise the spatial distribution of biomolecules by their molecular + masses. + meaning: OBI:0003099 + OBI:0003100: + title: multiplexed ion beam imaging assay + description: A cytometry time of flight assay in which molecules of interest + on or in cells are imaged through a system in which samples are labeled + with multiple different rare-earth tagged antibodies. A primary ion beam + is ued to rasterize sections under vacuum, releasing showers of secondary + ions detected by cytometry time of flight mass spectrometry. + meaning: OBI:0003100 + OBI:0003101: + title: nanospray desorption electrospray ionization assay + description: A mass spectrometry assay that analyzes organic and biological + molecules on a substrate by desorption of an analyte into a solvent bridge + formed between two capillaries and the analysis surface. One capillary supplies + solvent to create and maintain the bridge, while the second capillary transports + the dissolved analyte from the bridge to the mass spectrometer. A high voltage + applied between the inlet of mass spectrometer and the primary capillary + creates a self-aspirating nanospray. + meaning: OBI:0003101 + OBI:0003102: + title: nanodroplet processing in one pot for trace samples assay + description: A protein expression profiling assay in which proteomics sample + processing is performed in nanoliter volumes. Flow cytometry or laser microdissection + is employed to isolate a small population or single cells into a nanoPOTS + chip. Then, liquid chromatography mass spectrometry is used to measure the + global protein expression. + meaning: OBI:0003102 + OBI:0003103: + title: periodic acid-Schiff staining assay + description: A histological assay which is used on tissue samples to demonstrate + the presence of carbohydrates and carbohydrate compounds such as polysaccharides, + mucin, glycogen, or fungal cell wall components. + meaning: OBI:0003103 + OBI:0003104: + title: single cell combinatorial indexing assay for transposase-accessessable + chromatin using sequencing + description: An assay for transposase-accessible chromatin that uses sequencing + which involves single cell combinatorial indexing ('sci-') strategy where + nucleic acids from each of many cells are uniquely tagged through several + rounds of split-pool barcoding which enables identification of single cells + without single cell isolation. + meaning: OBI:0003104 + OBI:0003105: + title: single-cell combinatorial indexing RNA sequencing assay + description: A single-cell transcription profiling by RNA sequencing assay + that involves single cell combinatorial indexing ('sci-') strategy to profile + the transcriptomes of single cells or nuclei without single cell isolation. + meaning: OBI:0003105 + OBI:0003106: + title: sequential fluorescence in-situ hybridization assay + description: A fluorescence in-situ hybridization assay that involves ultra-resolution + imaging of cell activity by targetting thousands of single molecules with + fluorescent probes which find and hybridize with complementary DNA or RNA + sequences in the tissue sample, thus enabling identification of those molecules + directly in single cells with their spatial context preserved. + meaning: OBI:0003106 + OBI:0003107: + title: slide-seq assay + description: A transcription profiling by RNA sequencing assay that involves + transfer of RNA from tissue sections onto a surface covered in DNA-barcoded + beads with known positions, allowing the locations of the RNA to be inferred + by sequencing. + meaning: OBI:0003107 + OBI:0003108: + title: single-nucleus chromatin accessibility and mRNA expression sequencing + assay + description: An assay that involves joint profiling of accessible chromatin + and RNA within the same cells which enables direct matching of transcriptional + regulation to its outputs. + meaning: OBI:0003108 + OBI:0003110: + title: gas chromatography mass spectrometry assay + description: A mass spectrometry assay combining mass spectrometry and gas + chromatography for the qualitative as well as quantitative determination + of compounds. + meaning: OBI:0003110 + OBI:0003111: + title: SOMAscan assay + description: An analyte assay that uses aptamers to detect protein analytes + in serum. + meaning: OBI:0003111 + OBI:0003112: + title: Olink assay + description: A proximity extension assay that uses quantitative polymerase + chain reaction (qPCR) technology to determine the concentration/presence + of proteins using a high-multiplex, high-throughput protein biomarker platform. + The assay utilizes two distinct oligonucleotide-labeled antibodies (‘probes’) + that bind at different sites for each detected protein. When the two probes + are in close proximity, a new PCR target sequence is formed by a proximity-dependent + DNA polymerization event. The resulting sequence is subsequently detected + and quantified using standard real-time PCR. + meaning: OBI:0003112 + OBI:0003113: + title: proximity extension assay + description: An analyte assay that uses quantitative polymerase chain reaction + (qPCR) technology to determine the concentration/presence of an analyte + or analyte complex. + meaning: OBI:0003113 + OBI:0003115: + title: antigen detection by cytometric bead array assay + description: A cytometric bead array assay in which a series of beads are + coated with antibodies specific to antigens of interest. Antigens of interest + attach to antibodies on the beads. Fluorescent labeled secondary antibodies + are used to detect the antigens of interest. + meaning: OBI:0003115 + OBI:0003116: + title: antibody detection by cytometric bead array assay + description: A cytometric bead array assay that detects antigen-specific antibodies. + In the assay a series of beads are coated with antigens which capture antibodies + specific to the antigens. Fluorescent labeled secondary antibodies are used + to detect the antibodies of interest. + meaning: OBI:0003116 + OBI:0003117: + title: 3D molecular structure determination assay + description: An assay that determines the 3-dimensional configuration of a + molecular entity or molecular complex. + meaning: OBI:0003117 + OBI:0003118: + title: electron-microscopy 3D molecular structure determination assay + description: A 3D molecular structure determination assay that uses electron + microscopy imaging. + meaning: OBI:0003118 + OBI:0003122: + title: 3D cell structure determination assay + description: A 3D structure determination assay that determines the 3-dimensional + configuration of a cell. + meaning: OBI:0003122 + OBI:0003123: + title: 3D neural cell structure determination assay + description: A 3D cell structure determination assay that determines the 3-dimensional + configuration of a neural cell. + meaning: OBI:0003123 + OBI:0003124: + title: neuron morphology assay + description: A 3D neural cell structure determination assay that determines + the 3-dimensional configuration of a neuron. + meaning: OBI:0003124 + OBI:0003125: + title: mosaicism with repeat frameshift genetic sparse labeling + description: A 3D neural cell structure determination assay where sparse and + stochastic methods are used to label genetically-defined neurons. + meaning: OBI:0003125 + OBI:0003126: + title: neuron morphology reconstruction assay + description: A neuron morphology assay where the morphology or structure of + a neuron is represented. Often, this assay is a combination of different + assays (sparse labelling, fluorescent labeling, fMOST). + meaning: OBI:0003126 + OBI:0003127: + title: B cell epitope assay + description: An immune epitope assay that characterizes the structrue of an + antibody-epitope complex, or measures the binding of an antibody receptor + to epitope, or the immune response process resulting from such a binding + event or the recognition of the epitope. + meaning: OBI:0003127 + OBI:0003128: + title: T cell epitope assay + description: An immune epitope assay that characterizes the structrue of an + epitope-T cell receptor complex, or measures the binding of a T cell receptor + to epitope, or the immune response process resulting from such a binding + event or the recognition of the epitope. + meaning: OBI:0003128 + OBI:0003145: + title: assay measuring quantitative binding of a MHC:ligand complex + description: An assay that detects the binding of a MHC molecule with a ligand, + and produces a quantitative measurement of the binding as an output. + meaning: OBI:0003145 + OBI:0003146: + title: assay measuring quantitative binding of an antigen:antibody complex + description: An assay that detects the binding of an antigen with an antibody, + and produces a quantitative measurement of the binding as an output. + meaning: OBI:0003146 + OBI:0003147: + title: assay measuring quantitative binding of an epitope:MHC:TCR complex + description: An assay that detects the binding of a MHC:epitope complex with + a T cell receptor, and produces a quantitative measurement of the binding + as an output. + meaning: OBI:0003147 + OBI:0003148: + title: albumin concentration assay + description: An albumin assay that measures the concentration of albumin in + a specimen. + meaning: OBI:0003148 + OBI:0003149: + title: basophil percentage assay + description: A basophil assay that measures the percentage of basophils in + a specimen. + meaning: OBI:0003149 + OBI:0003150: + title: calcium cation concentration assay + description: A calcium cation assay that measures the concentration of calcium + cations in a specimen. + meaning: OBI:0003150 + OBI:0003151: + title: chloride concentration assay + description: A chloride assay that measures the concentration of chloride + in a specimen. + meaning: OBI:0003151 + OBI:0003152: + title: cholesterol concentration assay + description: A cholesterol assay that measures the concentration of cholesterol + in a specimen. + meaning: OBI:0003152 + OBI:0003153: + title: creatinine concentration assay + description: A creatinine assay that measures the concentration of creatinine + in a specimen. + meaning: OBI:0003153 + OBI:0003154: + title: eosinophil percentage assay + description: An eosinophil assay that measures the percentage of eosinophils + in a specimen. + meaning: OBI:0003154 + OBI:0003155: + title: globulin concentration assay + description: A globulin assay that measures the concentration of globulin + in a specimen. + meaning: OBI:0003155 + OBI:0003156: + title: hemoglobin concentration assay + description: A hemoglobin assay that measures the amount of hemoglobin in + a specimen. + meaning: OBI:0003156 + OBI:0003157: + title: high-density lipoprotein cholesterol concentration assay + description: A high-density lipoprotein cholesterol assay that measures the + concentration of high-density lipoprotein cholesterol in a specimen. + meaning: OBI:0003157 + OBI:0003158: + title: iron concentration assay + description: An iron assay that measures the concentration of iron cation + in a specimen. + meaning: OBI:0003158 + OBI:0003159: + title: low-density lipoprotein cholesterol concentration assay + description: A low-density lipoprotein cholesterol assay that measures the + concentration of low-density lipoprotein cholesterol in a specimen. + meaning: OBI:0003159 + OBI:0003160: + title: lymphocyte percentage assay + description: A lymphocyte assay that measures the percentage of lymphocytes + in a specimen. + meaning: OBI:0003160 + OBI:0003161: + title: metamyelocyte count assay + description: A metamyelocyte assay that measures the number of metamyelocytes + in a specimen. + meaning: OBI:0003161 + OBI:0003162: + title: metamyelocyte percentage assay + description: A metamyelocyte assay that measures the percentage of metamyelocytes + in a specimen. + meaning: OBI:0003162 + OBI:0003163: + title: methemoglobin percentage assay + description: A methemoglobin assay that measures the percentage of methemoglobin + in a specimen. + meaning: OBI:0003163 + OBI:0003164: + title: monocyte percentage assay + description: A monocyte assay that measures the percentage of monocytes in + a specimen. + meaning: OBI:0003164 + OBI:0003165: + title: myelocyte count assay + description: A myelocyte assay that measures the number of myelocytes in a + specimen. + meaning: OBI:0003165 + OBI:0003166: + title: neutrophil percentage assay + description: A neutrophil assay that measures the percentage of neutrophils + in a specimen. + meaning: OBI:0003166 + OBI:0003167: + title: phosphate ion concentration assay + description: A phosphate ion assay that measures the concentration of phosphate + ions in a specimen. + meaning: OBI:0003167 + OBI:0003168: + title: potassium(1+) concentration assay + description: A potassium(1+) assay that measures the concentration of potassium(1+) + in a specimen. + meaning: OBI:0003168 + OBI:0003170: + title: reticulocyte percentage assay + description: A reticulocyte assay that measures the percentage of reticulocytes + in a specimen. + meaning: OBI:0003170 + OBI:0003171: + title: sodium(1+) concentration assay + description: A sodium(1+) assay that measures the concentration of sodium(1+) + in a specimen. + meaning: OBI:0003171 + OBI:0003172: + title: thyroid stimulating hormone concentration assay + description: A thyroid stimulating hormone assay that measures the concentration + of thyroid stimulating hormone in a specimen. + meaning: OBI:0003172 + OBI:0003173: + title: triglyceride concentration assay + description: A triglyceride assay that measures the concentration of triglycerides + in a specimen. + meaning: OBI:0003173 + OBI:0003174: + title: 3,3',5'-triiodothyronine concentration assay + description: A 3,3',5'-triiodothyronine assay that measures the concentration + of 3,3',5'-triiodothyronine in a specimen. + meaning: OBI:0003174 + OBI:0003175: + title: fibrinogen concentration assay + description: A fibrinogen assay that measures the concentration of fibrinogen + in a specimen. + meaning: OBI:0003175 + OBI:0003176: + title: free thyroxine concentration assay + description: A thyroxine assay that measures the concentration of free thyroxine + in a specimen. + meaning: OBI:0003176 + OBI:0003177: + title: total thyroxine concentration assay + description: A thyroxine assay that measures the concentration of total thyroxine + in a specimen. + meaning: OBI:0003177 + OBI:0003180: + title: direct bilirubin concentration assay + description: A bilirubin IXalpha assay that measures the concentration of + direct bilirubin in a specimen. + meaning: OBI:0003180 + OBI:0003181: + title: indirect bilirubin concentration assay + description: A bilirubin IXalpha assay that measures the concentration of + indirect bilirubin in a specimen. + meaning: OBI:0003181 + OBI:0003182: + title: total bilirubin concentration assay + description: A bilirubin IXalpha assay that measures the concentration of + total bilirubin in a specimen. + meaning: OBI:0003182 + OBI:0003183: + title: mean cell hemoglobin assay + description: A hemoglobin assay that measures the average concentration of + hemoglobin in a population of erythrocytes. + meaning: OBI:0003183 + OBI:0003184: + title: mean cell hemoglobin concentration assay + description: A hemoglobin assay that measures the concentration of hemoglobin + in a specimen. + meaning: OBI:0003184 + OBI:0003185: + title: mean platelet volume assay + description: A platelet assay that measures the average volume of platelets + in a specimen. + meaning: OBI:0003185 + OBI:0003186: + title: immature neutrophil count assay + description: A neutrophil assay that measures the number of immature neutrophils + in a specimen. + meaning: OBI:0003186 + OBI:0003187: + title: immature neutrophil percentage assay + description: An neutrophil assay that measures the percentage of immature + neutrophils in a specimen. + meaning: OBI:0003187 + OBI:0003188: + title: nucleated erythrocyte percentage assay + description: An erythrocyte assay that measures the percentage of nucleated + erythrocytes in a specimen. + meaning: OBI:0003188 + OBI:0003189: + title: mean cell volume assay + description: An erythrocyte assay that measures the average volume of erythrocytes + in a specimen. + meaning: OBI:0003189 + OBI:0003190: + title: erythrocyte assay + description: A cytometry assay that measures the abundance and/or characteristics + of erythrocytes. + meaning: OBI:0003190 + OBI:0003191: + title: manual hematocrit assay + description: A hematocrit assay that measures the percentage of erythrocytes + in a specimen by manual processes. + meaning: OBI:0003191 + OBI:0003192: + title: adiponectin assay + description: An analyte assay that measures the abundance of adiponectin + meaning: OBI:0003192 + OBI:0003193: + title: adiponectin concentration assay + description: An adiponectin assay that measures the concentration of adiponectin + in a specimen. + meaning: OBI:0003193 + OBI:0003194: + title: creatine assay + description: An analyte assay that measures the abundance of creatine + meaning: OBI:0003194 + OBI:0003195: + title: creatine concentration assay + description: A creatine assay that measures the concentration of creatine + in a specimen. + meaning: OBI:0003195 + OBI:0003196: + title: estradiol assay + description: An analyte assay that measures the abundance of estradiol + meaning: OBI:0003196 + OBI:0003197: + title: estradiol concentration assay + description: An estradiol assay that measures the concentration of estradiol + in a specimen. + meaning: OBI:0003197 + OBI:0003202: + title: leptin assay + description: An analyte assay that measures the abundance of leptin + meaning: OBI:0003202 + OBI:0003203: + title: leptin concentration assay + description: An leptin assay that measures the concentration of leptin in + a specimen. + meaning: OBI:0003203 + OBI:0003204: + title: lipoprotein concentration assay + description: An analyte assay that measures the abundance of lipoprotein + meaning: OBI:0003204 + OBI:0003205: + title: high-density lipoprotein concentration assay + description: A lipoprotein concentration assay that measures the concentration + of high-density lipoprotein in a specimen. + meaning: OBI:0003205 + OBI:0003206: + title: low-density lipoprotein concentration assay + description: A lipoprotein concentration assay that measures the concentration + of low-density lipoprotein in a specimen. + meaning: OBI:0003206 + OBI:0003207: + title: very-low-density lipoprotein concentration assay + description: A lipoprotein concentration assay that measures the concentration + of very-low-density lipoprotein in a specimen. + meaning: OBI:0003207 + OBI:0003208: + title: luteinizing hormone assay + description: An analyte assay that measures the abundance of luteinizing hormone + meaning: OBI:0003208 + OBI:0003209: + title: luteinizing hormone concentration assay + description: A luteinizing hormone assay that measures the concentration of + luteinizing hormone in a specimen. + meaning: OBI:0003209 + OBI:0003210: + title: nitrite assay + description: An analyte assay that measures the abundance of nitrite + meaning: OBI:0003210 + OBI:0003211: + title: nitrite concentration assay + description: A nitrite assay that measures the concentration of nitrite in + a specimen. + meaning: OBI:0003211 + OBI:0003212: + title: phospholipid assay + description: An analyte assay that measures the abundance of phospholipid + meaning: OBI:0003212 + OBI:0003213: + title: phospholipid concentration assay + description: A phospholipid assay that measures the concentration of phospholipids + in a specimen. + meaning: OBI:0003213 + OBI:0003214: + title: progesterone assay + description: An analyte assay that measures the abundance of progesterone + meaning: OBI:0003214 + OBI:0003215: + title: progesterone concentration assay + description: A progesterone assay that measures the concentration of progesterone + in a specimen. + meaning: OBI:0003215 + OBI:0003216: + title: testosterone assay + description: An analyte assay that measures the abundance of testosterone + meaning: OBI:0003216 + OBI:0003217: + title: testosterone concentration assay + description: A testosterone assay that measures the concentration of testosterone + in a specimen. + meaning: OBI:0003217 + OBI:0003218: + title: bile salt assay + description: An analyte assay that measures the abundance of bile salt + meaning: OBI:0003218 + OBI:0003219: + title: bile salt concentration assay + description: A bile salt assay that measures the concentration of bile salt + in a specimen. + meaning: OBI:0003219 + OBI:0003220: + title: fatty acid assay + description: An analyte assay that measures the abundance of fatty acid + meaning: OBI:0003220 + OBI:0003221: + title: free fatty acid concentration assay + description: A fatty acid assay that measures the concentration of free fatty + acids in a specimen. + meaning: OBI:0003221 + OBI:0003222: + title: insulin assay + description: An analyte assay that measures the abundance of insulin + meaning: OBI:0003222 + OBI:0003223: + title: insulin concentration assay + description: A insulin assay that measures the concentration of insulin in + a specimen. + meaning: OBI:0003223 + OBI:0003224: + title: follicle stimulating hormone assay + description: An analyte assay that measures the abundance of follicle stimulating + hormone + meaning: OBI:0003224 + OBI:0003225: + title: follicle stimulating hormone concentration assay + description: A follicle stimulating hormone assay that measures the concentration + of follicle stimulating hormone in a specimen. + meaning: OBI:0003225 + OBI:0003226: + title: total lymphocyte count assay + description: A lymphocyte assay that measures the number of lymphocytes and + large unstained cells in a specimen. + meaning: OBI:0003226 + OBI:0003227: + title: total lymphocyte percentage assay + description: A lymphocyte assay that measures the percentage of lymphocytes + and large unstained cells in a specimen. + meaning: OBI:0003227 + OBI:0003228: + title: fluorescent immunospot assay + description: A cytometry assay that detects the presence of cells that secrete + a material of interest (analyte). In the assay, a plate is coated with an + antibody specific to the analyte of interest. These antibodies capture the + analytes secreted by the cells. The analytes are then detected using fluorescent + labeled secondary antibodies. + meaning: OBI:0003228 + OBI:0003229: + title: plasma proteomics assay + description: A proteomics profiling assay that detects proteins in a blood + plasma specimen. + meaning: OBI:0003229 + OBI:0003230: + title: T cell activation induced marker assay + description: A flow cytometry assay that detects the presence/amount of antigen-specific + T cells without the need to identify their cytokine production. Instead, + antigen-specific T cells are detected on the basis of upregulation of TCR + stimulation-induced surface markers. + meaning: OBI:0003230 + OBI:0003232: + title: cerebrospinal fluid assay + description: An assay that has a cerebrospinal fluid specimen as evaluant. + meaning: OBI:0003232 + OBI:0003233: + title: endotracheal aspirate assay + description: An assay that has an endotracheal aspirate specimen as evaluant. + meaning: OBI:0003233 + OBI:0003234: + title: induced sputum assay + description: An assay that has an induced sputum specimen as evaluant. + meaning: OBI:0003234 + OBI:0003235: + title: lung assay + description: An assay that has a lung specimen as evaluant. + meaning: OBI:0003235 + OBI:0003236: + title: milk assay + description: An assay that has a milk specimen as evaluant. + meaning: OBI:0003236 + OBI:0003237: + title: feces assay + description: An assay that has a feces specimen as evaluant. + meaning: OBI:0003237 + OBI:0003238: + title: umbilical cord blood assay + description: An assay that has an umbilical cord blood specimen as evaluant. + meaning: OBI:0003238 + OBI:0003239: + title: saliva assay + description: An assay that has a saliva specimen as evaluant. + meaning: OBI:0003239 + OBI:0003240: + title: cerebrospinal fluid microbiology assay + description: An organism detection assay that detects microorganisms in a + cerebrospinal fluid specimen. + meaning: OBI:0003240 + OBI:0003241: + title: endotracheal tube aspirate microbiology assay + description: An organism detection assay that detects microorganisms in an + endotracheal aspirate specimen. + meaning: OBI:0003241 + OBI:0003242: + title: induced sputum microbiology assay + description: An organism detection assay that detects microorganisms in an + induced sputum specimen. + meaning: OBI:0003242 + OBI:0003282: + title: lung microbiology assay + description: An organism detection assay that detects microorganisms in a + lung specimen. + meaning: OBI:0003282 + OBI:0003283: + title: pleural fluid microbiology assay + description: An organism detection assay that detects microorganisms in a + pleural fluid specimen. + meaning: OBI:0003283 + OBI:0003284: + title: umbilical cord blood microbiology assay + description: An organism detection assay that detects microorganisms in an + umbilical cord blood specimen. + meaning: OBI:0003284 + OBI:0003285: + title: nasopharyngeal or oropharyngeal swab microbiology assay + description: An organism detection assay that detects microorganisms in a + nasopharyngeal or oropharyngeal swab specimen. + meaning: OBI:0003285 + OBI:0003286: + title: urine microbiology assay + description: An organism detection assay that detects microorganisms in a + urine specimen. + meaning: OBI:0003286 + OBI:0003287: + title: multiplex real time polymerase chain reaction assay + description: A real time polymerase chain reaction assay in which multiple + DNA sequences are amplified in a single cycle. + meaning: OBI:0003287 + OBI:0003288: + title: multiplex real time reverse-transcription polymerase chain reaction + assay + description: A real time reverse-transcription polymerase chain reaction assay + in which multiple DNA sequences are amplified in a single cycle. + meaning: OBI:0003288 + OBI:0003290: + title: mosquito membrane feeding assay + description: An assay that evaluates host-to-mosquito transmission of a parasite + organism by feeding a specimen of host blood infected with the parasite + organism to a collection of mosquitoes through a mosquito membrane feeding + device and, after a given time, dissecting the mosquitoes and counting the + number of parasite organisms within them. + meaning: OBI:0003290 + OBI:0003292: + title: cytometric bead array assay measuring epitope specific granulysin release + by T cells + description: A cytometric bead array assay that detects epitope specific granulysin + release by T cells. + meaning: OBI:0003292 + OBI:0003293: + title: cytometric bead array assay measuring epitope specific perforin release + by T cells + description: A cytometric bead array assay that detects epitope specific perforin + release by T cells. + meaning: OBI:0003293 + OBI:0003294: + title: modified acid-fast stain microscopy assay + description: A microscopy assay that uses staining to identify acid-fast organisms + in a specimen and does not require heating. + meaning: OBI:0003294 + OBI:0003296: + title: antibodies from lymphocyte secretions assay + description: An assay that evaluates a blood specimen for antibodies currently + being produced by lymphocytes in the specimen, by separating peripheral + blood mononuclear cells, culturing them, and then collecting the supernatant + containing the antibodies secreted from those cells. + meaning: OBI:0003296 + OBI:0003297: + title: tyramide signal amplification sequencing assay + description: A DNA sequencing assay that uses tyramide signal amplification + (TSA) to assess distance of DNA regions to a targeted nuclear compartment + or protein, typically on a scale of 100-1000 nm. + meaning: OBI:0003297 + OBI:0003298: + title: DNA adenine methyltransferase identification assay + description: An assay for identifying DNA binding sites for a protein by fusing + it to Dam methylase, and expressing it so that bound DNA gets methylated. + The methylated DNA can then be isolated and analyzed. + meaning: OBI:0003298 + OBI:0003299: + title: DamID-seq + description: A DNA adenine methyltransferase identification (DamID) assay + in which DamID-generated DNA fragments undergo high-throughput sequencing + to determine a protein's DNA-binding site. + meaning: OBI:0003299 + OBI:0003300: + title: nucleolus-associated domain sequencing assay + description: A DNA sequencing assay in which nucleoli are isolated and the + DNA associated with them is sequenced to identify nucleoli-associating domains. + meaning: OBI:0003300 + OBI:0003301: + title: DNase Hi-C assay + description: A Hi-C assay in which DNase I is used for digesting DNA fragments + rather than a restriction enzyme, which can result in a higher resolution + of mapped chromosome contacts. + meaning: OBI:0003301 + OBI:0003302: + title: micro-C assay + description: A Hi-C assay which uses micrococcal nuclease digestion in place + of the restriction enzyme digestion step. + meaning: OBI:0003302 + OBI:0003303: + title: single cell combinatorial indexing Hi-C assay + description: A Hi-C assay performed on massively multiplexed single-cell samples. + meaning: OBI:0003303 + OBI:0003304: + title: single nucleus Hi-C assay + description: A Hi-C assay performed on isolated nuclei. + meaning: OBI:0003304 + OBI:0003305: + title: single cell Hi-C assay + description: A Hi-C assay performed on a single cell. + meaning: OBI:0003305 + OBI:0003306: + title: bulk Hi-C assay + description: A Hi-C assay in which the sample that is sequenced is derived + from a collection of cells, such as a tissue sample or entire cell culture, + and therefore provides results representative of the aggregate of sample + cells. + meaning: OBI:0003306 + OBI:0003307: + title: multi-contact Hi-C assay + description: A Hi-C assay that assesses interactions between multiple DNA + fragments rather than only pairwise interactions as in traditional Hi-C. + The experimental procedure of cross-linking, digestion, and ligation is + performed similarly to traditional Hi-C, but after DNA is purified a long-read + library is produced in which many ligated fragments may be contained in + a single molecule. The library is then sequenced on a long read sequencer. + meaning: OBI:0003307 + OBI:0003309: + title: transposase-mediated analysis of chromatin looping assay + description: A DNA sequencing assay designed to detect interacting genomic + regions. Rather than the traditional Hi-C approach of digestion and proximity + ligation, the procedure involves transposase-mediated insertion of an oligonucleotide + linker between the pair of interacting regions. + meaning: OBI:0003309 + OBI:0003310: + title: split-pool recognition of interactions and tag extension assay + description: A sequencing assay designed to detect multi-way interactions + between nucleic acids. The procedure involves crosslinking nuclei, and then + splitting the lysate among wells in a 96-well or other multi-well plate. + A different barcode is ligated to the fragments in each well, and the lysates + are pooled together again. This sequence of splitting, tagging, and re-combining + is repeated several times so that fragments with the same sequences of barcodes + represent fragments that have co-associated throughout the experiment. Finally, + a sequencing library is constructed and high-throughput sequencing is performed. + meaning: OBI:0003310 + OBI:0003311: + title: DNA split-pool recognition of interactions and tag extension assay + description: A split-pool recognition of interactions and tag extension (SPRITE) + assay that only assays interactions between regions of genomic DNA. + meaning: OBI:0003311 + OBI:0003312: + title: RNA-DNA split-pool recognition of interactions and tag extension assay + description: A split-pool recognition of interactions and tag extension (SPRITE) + assay in which RNA in the cross-linked complexes is converted to cDNA before + the initial splitting step, allowing analysis of RNA-DNA interactions. + meaning: OBI:0003312 + OBI:0003313: + title: genome architecture mapping assay + description: A DNA sequencing assay designed to analyze 3D chromatin structure + without relying on digestion and ligation. The procedure involves cryosectioning + samples in random orientation, and then single nuclear profiles are isolated + by laser microdissection. Each nuclear profile then undergoes high-throughput + sequencing, and subsequent analysis can generate a matrix of inferred proximity + between genomic regions. + meaning: OBI:0003313 + OBI:0003314: + title: mapping RNA-genome interactions assay + description: A nuclear ligation assay for probing RNA-DNA interactions in + the nucleus. Nuclei are crosslinked, and RNA fragments are ligated to proximal + DNA fragments via a special linker molecule. After reverse transcription, + high-throughput sequencing is performed. + meaning: OBI:0003314 + OBI:0003315: + title: assay measuring epitope specific amphiregulin production by T cells + description: A T cell epitope specific cytokine production assay that detects + amphiregulin production by T cells. + meaning: OBI:0003315 + OBI:0003316: + title: ELISA measuring epitope specific amphiregulin production by T cells + description: An enzyme-linked immunosorbent assay that detects amphiregulin + production by T cells. + meaning: OBI:0003316 + OBI:0003321: + title: venous blood microbiology assay + description: A blood microbiology assay that detects a microorganism in a + venous blood specimen. + meaning: OBI:0003321 + OBI:0003323: + title: high throughput multiplexed assay measuring binding of a B cell epitope:antibody + complex + description: A B cell epitope assay that measures the binding of an antibody + receptor to an epitope using a high throughput multiplexed assay. + meaning: OBI:0003323 + OBI:0003324: + title: high throughput multiplexed assay measuring binding of a T cell epitope:MHC:TCR + complex + description: A T cell epitope assay that measures the binding of T cell receptor + to an epitope using a high throughput multiplexed assay. + meaning: OBI:0003324 + OBI:0003325: + title: high throughput multiplexed assay measuring binding of a MHC:ligand + complex + description: A MHC ligand assay that detects the binding of a ligand to an + MHC molecule using a high throughput multiplexed assay. + meaning: OBI:0003325 + OBI:0003326: + title: high throughput multiplexed assay measuring MHC ligand processing and + presentation + description: A MHC ligand assay that determines what ligands are processed + and loaded onto MHC molecules by eluting ligands and identifying them using + a high throughput multiplexed assay. + meaning: OBI:0003326 + OBI:0003368: + title: detection technique + description: An assay (A) that is part of another assay (B), where the target + entities of A and B are disjoint, and the target entity of A is a proxy + for the target of assay B. + meaning: OBI:0003368 + OBI:0003372: + title: assay measuring epitope specific lymphotactin production by T cells + description: A T cell epitope specific cytokine production assay that detects + lymphotactin production by T cells. + meaning: OBI:0003372 + OBI:0003373: + title: ELISA measuring epitope specific lymphotactin production by T cells + description: An enzyme-linked immunosorbent assay that detects lymphotactin + production by T cells. + meaning: OBI:0003373 + OBI:0003375: + title: patch-seq assay + description: An assay that combines electrophysiological, transcriptomic, + and morphological characterization of individual neurons. In this approach, + patch-clamp is used to generate an electrophysiological recording of the + neuron, then the neuron's cytoplasm and/or nucleus is collected and processed + for RNAseq, and finally the cell is simultaneously filled with a dye that + allows for subsequent morphological reconstruction. + meaning: OBI:0003375 + OBI:0003376: + title: droplet-based single-cell RNA sequencing assay + description: 'A single-cell transcription profiling by RNA sequencing assay + that analyzes mRNA transcripts from droplets of individual cells. The process + involves the following steps: (1) prepare a single-cell suspension from + a tissue; (2) co-encapsulate each cell with a distinctly barcoded microparticle + (bead) in a nanoliter-scale droplet; (3) lyse cells after they have been + isolated in droplets; (4) capture a cell’s mRNAs on its companion microparticle, + forming STAMPs (single-cell transcriptomes attached to microparticles); + (5) reverse-transcribe, amplify, and sequence.' + meaning: OBI:0003376 + OBI:0003377: + title: single-nucleus chromatin accessibility and mRNA expression sequencing + 2 assay + description: An assay that uses combinatorial indexing to generate a library + of cDNA and open chromatin gDNA fragments by tagmenting a single nuclei + and open chromatin, and encapsulating those in a droplet including both + an oligo-dT-containing barcoded bead and a splint oligonucleotide, which + links the tagmented gDNA fragments to the bead which capture both mRNAs + and open chromatin fragments. + meaning: OBI:0003377 + OBI:0003378: + title: switching mechanism at the 5' end of RNA template sequencing assay + description: A single cell transcription profiling by RNA sequencing assay + wherein cells are lysed and their recovered RNA is hybridized to an oligo(dT) + that primes a reverse transcription reaction, the outcome of which are cDNA’s + that have PCR handles on both ends. The cDNA's are then amplified using + PCR, and the products are sequenced. + meaning: OBI:0003378 + OBI:0003379: + title: switching mechanism at the 5' end of RNA template sequencing 2 assay + description: A single cell transcription profiling by RNA sequencing assay + that is a variation on the switching mechanism at the 5' end of RNA template + sequencing assay (SMARTseq) that allows the generation of full-length cDNA + and sequencing libraries by using standard reagents. + meaning: OBI:0003379 + OBI:0003381: + title: placental blood microbiology assay + description: A blood microbiology assay that detects microorganisms in a placental + blood specimen. + meaning: OBI:0003381 + OBI:0003412: + title: linked-read sequencing assay + description: A DNA sequencing assay that uses microfluidics to partition and + barcode high molecular weight DNA such that short reads derived from fragments + of the large piece of DNA can be assembled within the context of the high + molecular weight piece of DNA they are derived from, facilitating the use + of short read data to sequence and assemble large genomes. + meaning: OBI:0003412 + OBI:0003418: + title: antigen specific antibodies in blood assay + description: An antigen specific antibodies assay that has a blood specimen + as evaluant. + meaning: OBI:0003418 + OBI:0003419: + title: antigen specific antibodies in milk assay + description: An antigen specific antibodies assay that has a milk specimen + as evaluant. + meaning: OBI:0003419 + OBI:0003422: + title: enzymatic activity level assay + description: An assay in which the level of catalytic activity of an enzyme + is determined. + meaning: OBI:0003422 + OBI:0003423: + title: 5'-nucleotidase activity level assay + description: An enzymatic activity level assay that measures the activity + of 5'-nucleotidase in a sample. + meaning: OBI:0003423 + OBI:0003424: + title: alanine aminotransferase activity level assay + description: An enzymatic activity level assay that measures the activity + of alanine aminotransferase in a sample. + meaning: OBI:0003424 + OBI:0003425: + title: alkaline phosphatase activity level assay + description: An enzymatic activity level assay that measures the activity + of alkaline phosphatase in a sample. + meaning: OBI:0003425 + OBI:0003426: + title: amylase activity level assay + description: An enzymatic activity level assay that measures the activity + of amylase in a sample. + meaning: OBI:0003426 + OBI:0003427: + title: aspartate aminotransferase activity level assay + description: An enzymatic activity level assay that measures the activity + of aspartate aminotransferase in a sample. + meaning: OBI:0003427 + OBI:0003428: + title: cholinesterase activity level assay + description: An enzymatic activity level assay that measures the activity + of cholinesterase in a sample. + meaning: OBI:0003428 + OBI:0003429: + title: creatine kinase activity level assay + description: An enzymatic activity level assay that measures the activity + of creatine kinase in a sample. + meaning: OBI:0003429 + OBI:0003430: + title: gamma-glutamyltransferase activity level assay + description: An enzymatic activity level assay that measures the activity + of gamma-glutamyltransferase in a sample. + meaning: OBI:0003430 + OBI:0003431: + title: glutamate dehydrogenase activity level assay + description: An enzymatic activity level assay that measures the activity + of glutamate dehydrogenase in a sample. + meaning: OBI:0003431 + OBI:0003432: + title: isocitrate dehydrogenase activity level assay + description: An enzymatic activity level assay that measures the activity + of isocitrate dehydrogenase in a sample. + meaning: OBI:0003432 + OBI:0003433: + title: lactate dehydrogenase activity level assay + description: An enzymatic activity level assay that measures the activity + of lactate dehydrogenase in a sample. + meaning: OBI:0003433 + OBI:0003434: + title: sorbitol dehydrogenase activity level assay + description: An enzymatic activity level assay that measures the activity + of sorbitol dehydrogenase in a sample. + meaning: OBI:0003434 + OBI:0003435: + title: acyl-CoA oxidase activity level assay + description: An enzymatic activity level assay that measures the activity + of Acyl-CoA oxidase in a sample. + meaning: OBI:0003435 + OBI:0003436: + title: N-acetyl-beta-glucosaminidase activity level assay + description: An enzymatic activity level assay that measures the activity + of N-acetyl-beta-glucosaminidase in a sample. + meaning: OBI:0003436 + OBI:0003437: + title: ribonuclease activity level assay + description: An enzymatic activity level assay that measures the activity + of ribonuclease in a sample. + meaning: OBI:0003437 + OBI:0003438: + title: galactosidase activity level assay + description: An enzymatic activity level assay that measures the activity + of galactosidase in a sample. + meaning: OBI:0003438 + OBI:0003457: + title: epitope protection from infectious challenge experiment based on survival + description: An epitope protection from infectious challenge experiment that + determines the success of the epitope intervention based on increased survival + of the host compared to controls. + meaning: OBI:0003457 + OBI:0003458: + title: epitope protection from tumor challenge experiment based on burden + description: An epitope protection from tumor challenge experiment in which + the readout is a reduction in the presence of malignant cells in the host + compared to controls. + meaning: OBI:0003458 + OBI:0003459: + title: epitope protection from tumor challenge experiment based on survival + description: An epitope protection from tumor challenge experiment that determines + the success of the epitope intervention based on increased survival of the + host compared to controls. + meaning: OBI:0003459 + OBI:0003460: + title: in vivo assay measuring T cell epitope specific protection from pathogen + challenge + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge. + meaning: OBI:0003460 + OBI:0003461: + title: in vivo assay measuring T cell epitope specific protection from tumor + challenge + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge. + meaning: OBI:0003461 + OBI:0003462: + title: in vivo assay measuring T cell epitope specific protection from other + challenge + description: An in vivo assay measuring T cell epitope specific protection + from a challenge other than pathogen, infection, or tumor. + meaning: OBI:0003462 + OBI:0003463: + title: in vivo assay measuring T cell epitope specific survival after tumor + challenge + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge using survival. + meaning: OBI:0003463 + OBI:0003464: + title: in vivo assay measuring T cell epitope specific survival after pathogen + challenge + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge using survival. + meaning: OBI:0003464 + OBI:0003465: + title: in vivo assay measuring B cell epitope specific protection from pathogen + challenge + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge. + meaning: OBI:0003465 + OBI:0003466: + title: in vivo assay measuring B cell epitope specific protection from tumor + challenge + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge. + meaning: OBI:0003466 + OBI:0003467: + title: in vivo assay measuring B cell epitope specific protection from other + challenge + description: An in vivo assay measuring B cell epitope specific protection + from a challenge other than pathogen, infection, or tumor. + meaning: OBI:0003467 + OBI:0003468: + title: in vivo assay measuring B cell epitope specific survival after pathogen + challenge + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge using survival. + meaning: OBI:0003468 + OBI:0003469: + title: in vivo assay measuring B cell epitope specific survival after tumor + challenge + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge using survival. + meaning: OBI:0003469 + OBI:0003470: + title: in vivo assay measuring T cell epitope specific protection from pathogen + challenge resulting from the adoptive transfer of epitope specific T cells + description: An in vivo assay measuring a T cell epitope specific protection + from a pathogen challenge after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0003470 + OBI:0003471: + title: in vivo assay measuring T cell epitope specific pathogen protection + from challenge resulting from the adoptive transfer of epitope specific + T cells based on survival + description: An in vivo assay measuring T cell epitope specific protection + from pathogen challenge resulting from the adoptive transfer of epitope + specific T cells using survival. + meaning: OBI:0003471 + OBI:0003472: + title: in vivo assay measuring T cell epitope specific protection from tumor + challenge resulting from the adoptive transfer of epitope specific T cells + description: An in vivo assay measuring a T cell epitope specific protection + from a tumor challenge after adoptive transfer of epitope specific T cells. + meaning: OBI:0003472 + OBI:0003473: + title: in vivo assay measuring T cell epitope specific protection from tumor + challenge resulting from the adoptive transfer of epitope specific T cells + based on survival + description: An in vivo assay measuring T cell epitope specific protection + from tumor challenge resulting from the adoptive transfer of epitope specific + T cells using survival. + meaning: OBI:0003473 + OBI:0003474: + title: in vivo assay measuring T cell epitope specific protection from other + challenge resulting from the adoptive transfer of epitope specific T cells + description: An in vivo assay measuring a T cell epitope specific protection + from other challenge after adoptive transfer of epitope specific T cells. + meaning: OBI:0003474 + OBI:0003475: + title: in vivo assay measuring B cell epitope specific protection from pathogen + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells + description: An in vivo assay measuring a B cell epitope specific protection + from a pathogen challenge after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0003475 + OBI:0003476: + title: in vivo assay measuring B cell epitope specific pathogen protection + from challenge resulting from the adoptive transfer of epitope specific + antibodies or B cells based on survival + description: An in vivo assay measuring B cell epitope specific protection + from pathogen challenge resulting from the adoptive transfer of epitope + specific antibodies or B cells using survival. + meaning: OBI:0003476 + OBI:0003477: + title: in vivo assay measuring B cell epitope specific protection from tumor + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells + description: An in vivo assay measuring a B cell epitope specific protection + from a tumor challenge after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0003477 + OBI:0003478: + title: in vivo assay measuring B cell epitope specific protection from tumor + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells based on survival + description: An in vivo assay measuring B cell epitope specific protection + from tumor challenge resulting from the adoptive transfer of epitope specific + antibodies or B cells using survival. + meaning: OBI:0003478 + OBI:0003479: + title: in vivo assay measuring B cell epitope specific protection from other + challenge resulting from the adoptive transfer of epitope specific antibodies + or B cells + description: An in vivo assay measuring a B cell epitope specific protection + from other challenge after adoptive transfer of epitope specific antibodies + or B cells. + meaning: OBI:0003479 + OBI:0003480: + title: Gram stain assay + description: An organism detection assay that identifies bacteria based on + the differential retention of a crystal violet-iodine complex within the + cell wall. + meaning: OBI:0003480 + OBI:0003484: + title: assay measuring epitope specific interleukin-25 production by T cells + description: A T cell epitope specific cytokine production assay that detects + interleukin-25 production by T cells. + meaning: OBI:0003484 + OBI:0003485: + title: detection of specific nucleic acids with complementary probes assay + measuring epitope specific interleukin-25 production by T cells + description: A detection of specific nucleic acid polymers with complementary + probes that detects interleukin-25 production by T cells. + meaning: OBI:0003485 + OBI:0003486: + title: intracellular cytokine staining assay measuring epitope specific interleukin-25 + production by T cells + description: A flow cytometry assay that detects interleukin-25 production + by T cells. + meaning: OBI:0003486 + OBI:0003487: + title: ELISA measuring epitope specific interleukin-25 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-25 + production by T cells. + meaning: OBI:0003487 + OBI:0003488: + title: cell culture analyte detection bioassay measuring epitope specific + tumor necrosis factor superfamily cytokine production by T cells + description: A reporter cell line analyte detection bioassay that detects + tumor necrosis factor superfamily cytokine production by T cells. + meaning: OBI:0003488 + OBI:0003498: + title: organism detection assay + description: An assay that detects a type of organism and/or the quantity + of individuals of a type of organism. + meaning: OBI:0003498 + OBI:0003501: + title: functional assessment of individual + description: A physical examination of an organism's ability to perform functional + activities. + meaning: OBI:0003501 + OBI:0003502: + title: facial atrophy assessment + description: An observational assessment of the loss of facial muscle tissue + due to inactivity or disease. + meaning: OBI:0003502 + OBI:0003503: + title: tongue atrophy assessment + description: An observational assessment of the loss of muscle tissue related + to tongue movement due to inactivity or disease. + meaning: OBI:0003503 + OBI:0003504: + title: forced cough assessment + description: A functional assessment of an individual's ability to cough forcefully. + meaning: OBI:0003504 + OBI:0003505: + title: speech test assessment + description: A functional assessment of an individual's ability to understandably + repeat spoken sentences. + meaning: OBI:0003505 + OBI:0003506: + title: finger to finger assessment + description: A functional assessment of an individual's ability to touch index + fingers together in front of the sternum without oscillation for a specified + duration of time + meaning: OBI:0003506 + OBI:0003507: + title: nose to finger assessment + description: A functional assessment of an individual's ability to touch their + own nose and then touch an examiners finger in front of them and then touch + their own nose once more. + meaning: OBI:0003507 + OBI:0003508: + title: dysmetria assessment + description: A functional assessment of an individual's ability to accurately + touch a moving target with their finger and then touch their own chin a + number of times in a row. + meaning: OBI:0003508 + OBI:0003509: + title: rapid alternating hands assessment + description: A functional assessment of an individual's ability to alternate + the forearm between pronation and suppination as quickly as possible during + a specified duration of time + meaning: OBI:0003509 + OBI:0003510: + title: finger taps assessment + description: A functional assessment of an individual's ability to touch their + finger-tip to thumb as many times as possible during a specified duration + of time. + meaning: OBI:0003510 + OBI:0003511: + title: heel along shin assessment + description: A functional assessment of an individual's ability to slide their + heel back and forth along their contralateral tibia from the patella to + the ankle with the contralateral leg extended. + meaning: OBI:0003511 + OBI:0003512: + title: heel to shin assessment + description: A functional assessment of an individual's ability to tap their + heel to the midpoint of the contralateral shin a number of times. + meaning: OBI:0003512 + OBI:0003513: + title: muscle atrophy assessment + description: An observational assesment of an individual's muscle tissue loss + due to inactivity or disease. + meaning: OBI:0003513 + OBI:0003514: + title: muscle weakness assessment + description: A functional assessment of an individual's ability to perform + muscle movement to overcome gravity or physical resistence. + meaning: OBI:0003514 + OBI:0003515: + title: vibratory sense assessment + description: A functional assessment of an individual's ability to sense vibration. + meaning: OBI:0003515 + OBI:0003516: + title: position sense assessment + description: A functional assessment of an individual's ability to sense the + position of a finger or toe that has been manipulated by minimal random + movements. + meaning: OBI:0003516 + OBI:0003517: + title: deep tendon reflex assessment + description: A functional assessment of an individual's muscle contraction + when a muscle is triggered by a signal from a muscle spindle in response + to a stimulus applied to a specific trigger point on the body. + meaning: OBI:0003517 + OBI:0003518: + title: limits of stability assessment + description: The functional assessment of an individual's ability to maintain + balance, posture or upright stability. + meaning: OBI:0003518 + OBI:0003519: + title: sitting posture assessment + description: A limits of stability assessment designed to assess an individual's + ability to maintain unsupported posture while sitting over a given time + period. + meaning: OBI:0003519 + OBI:0003520: + title: stance feet apart assessment + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with feet 20 cm apart. + meaning: OBI:0003520 + OBI:0003521: + title: stance feet apart assessment, with eyes closed + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with their eyes closed. + meaning: OBI:0003521 + OBI:0003522: + title: stance feet together assessment + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with feet together. + meaning: OBI:0003522 + OBI:0003523: + title: stance feet together assessment, with eyes closed + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with feet together and eyes closed. + meaning: OBI:0003523 + OBI:0003524: + title: tandem stance assessment + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance with feet in tandem placement. + meaning: OBI:0003524 + OBI:0003525: + title: stance on one foot assessment + description: A limits of stability assessment designed to assess an individual's + ability to maintain a stable stance on one foot. + meaning: OBI:0003525 + OBI:0003526: + title: tandem walk assessment + description: A limits of stability assessment designed to assess an individual's + ability to maintain balance while walking in a straight line placing steps + in tandem. + meaning: OBI:0003526 + OBI:0003527: + title: gait assessment + description: A limits of stability assessment designed to assess an individual's + manner or pattern of walking. + meaning: OBI:0003527 + OBI:0003528: + title: bulbar assessment + description: A functional assessment of an individual's lower cranial nerve + function via proxy of facial muscle performance. + meaning: OBI:0003528 + OBI:0003529: + title: spontaneous speech assessment + description: A functional assessment of an individual's ability to articulate + spoken words. + meaning: OBI:0003529 + OBI:0003530: + title: limb coordination assessment + description: A functional assessment of an individual's ability to coordinate + limb movement. + meaning: OBI:0003530 + OBI:0003531: + title: upper limb coordination assessment + description: A limb coordination assessment designed to assess an individual's + ability to coordinate upper limb movement. + meaning: OBI:0003531 + OBI:0003532: + title: lower limb coordination assessment + description: A limb coordination assessment designed to assess an individual's + ability to coordinate lower limb movement. + meaning: OBI:0003532 + OBI:0003533: + title: nervous system functionality assessment + description: A functional assesment of an individual's nerve performance. + Specifically the nerves connecting the sensory and motor structures with + the central nervous system. + meaning: OBI:0003533 + OBI:0003534: + title: upright stability assessment + description: A functional assessment of an individual's ability to maintain + upright body posture. + meaning: OBI:0003534 + OBI:0003535: + title: deep tendon reflex assessment of the knee joint + description: A deep tendon reflex assessment of an individual's reaction to + stimulus applied to a knee joint. + meaning: OBI:0003535 + OBI:0003536: + title: observational assessment of individual + description: A physical examination of an organism through visual assesment. + meaning: OBI:0003536 + OBI:0003537: + title: deep tendon reflex assessment of the ankle joint + description: A deep tendon reflex assessment of an individual's reaction to + stimulus applied to an ankle joint. + meaning: OBI:0003537 + OBI:0003538: + title: deep tendon reflex assessment of the tendon of biceps brachii + description: A deep tendon reflex assessment of an individual's reaction to + stimulus applied to a tendon of biceps brachii. + meaning: OBI:0003538 + OBI:0003539: + title: deep tendon reflex assessment of the brachioradialis + description: A deep tendon reflex assessment of an individual's reaction to + stimulus applied to a brachioradialis. + meaning: OBI:0003539 + OBI:0003540: + title: tandem mass spectrometry assay + description: A mass spectrometry assay that uses two or more analyzers separated + by a region in which ions can be induced to fragment by transfer of energy + (frequently by collision with other molecules). + meaning: OBI:0003540 + OBI:0003541: + title: ELISA measuring Orientia tsutsugamushi IgM antibody + description: An enzyme-linked immunosorbent assay that detects the IgM antibody + that binds Orientia tsutsugamushi. + meaning: OBI:0003541 + OBI:0003542: + title: microarray assay measuring Dengue IgM antibody + description: A microarray assay that detects the IgM antibody that binds Dengue. + meaning: OBI:0003542 + OBI:0003543: + title: microarray assay measuring NS1 + description: A microarray assay that detects NS1. + meaning: OBI:0003543 + OBI:0003544: + title: analytical chromatography measuring Chikungunya IgM antibody + description: Analytical chromatography that detects the IgM antibody that + binds Chikungunya. + meaning: OBI:0003544 + OBI:0003545: + title: ELISA measuring Chikungunya IgM antibody + description: An enzyme-linked immunosorbent assay that detects the IgM antibody + that binds Chikungunya. + meaning: OBI:0003545 + OBI:0003546: + title: microarray ELISA measuring Chikungunya IgM antibody + description: An enzyme-linked immunosorbent assay that uses a microarray as + the solid support and detects the IgM antibody that binds Chikungunya. + meaning: OBI:0003546 + OBI:0003552: + title: proximity ligation-assisted ChIP-seq + description: A chromosome conformation capture assay in which proximity ligation + is conducted in nuclei prior to chromatin shearing and immunoprecipitation. + Immunopreciptation with an antibody that targets a transcription factor + or histone modification allows for selection and enrichment of specific + genomic regions for investigation of long-range chromosomal interactions. + meaning: OBI:0003552 + OBI:0003576: + title: skin of body microbiology assay + description: An organism detection assay that detects microorganisms in a + skin of body specimen. + meaning: OBI:0003576 + OBI:0003578: + title: bone marrow microbiology assay + description: An organism detection assay that detects microorganisms in a + bone marrow specimen. + meaning: OBI:0003578 + OBI:0003580: + title: nasal aspirate microbiology assay + description: An organism detection assay that detects microorganisms in a + nasal aspirate specimen. + meaning: OBI:0003580 + OBI:0003582: + title: cell proliferation assay using carboxyfluorescein succinimidyl ester + staining + description: A cell proliferation assay that uses carboxyfluorescein succinimidyl + ester staining to detect cell division. + meaning: OBI:0003582 + OBI:0003583: + title: cell viability assay + description: A cytometry assay which measures the number of living cells in + a population. + meaning: OBI:0003583 + OBI:0003584: + title: cell viability assay using Annexin V staining + description: A cell viability assay that uses Annexin V staining to detect + apoptotic cells. + meaning: OBI:0003584 + OBI:0003587: + title: cell culture assay + description: An assay that has cell culture as an input. + meaning: OBI:0003587 + OBI:0003589: + title: serum anti-Epstein-Barr virus antibody level assay + description: An antigen specific antibodies assay that is meant to detect + antibodies that bind to Epstein-Barr virus (EBV) antigens in a serum sample. + meaning: OBI:0003589 + OBI:0003590: + title: serum anti-cytomegalovirus antibody level assay + description: A CMV antibody assay that has serum as an input. + meaning: OBI:0003590 + OBI:0003598: + title: single cell B cell receptor repertoire sequencing assay + description: A B cell receptor repertoire sequencing assay that determines + the sequence of DNA or RNA molecules that encode the repertoire of B cell + receptors that can be traced to a single cell of origin. + meaning: OBI:0003598 + OBI:0003599: + title: single cell T cell receptor repertoire sequencing assay + description: A T cell receptor repertoire sequencing assay that determines + the sequence of DNA or RNA molecules that encode the repertoire of T cell + receptors that can be traced to a single cell of origin. + meaning: OBI:0003599 + OBI:0003601: + title: quartz crystal microbalance assay + description: An assay that measures the change in frequency of a quartz crystal + resonator resulting from the addition or removal of a small mass of a ligand + specifically binding at the surface of the resonator. + meaning: OBI:0003601 + OBI:0003602: + title: quartz crystal microbalance assay measuring the dissociation constant + [KD] of a B cell epitope:antibody complex + description: A quartz crystal microbalance assay that measures the dissociation + constant [KD] of an antigen binding with an antibody. + meaning: OBI:0003602 + OBI:0003604: + title: multiplexed error-robust fluorescence in situ hybridization assay + description: A fluorescence in-situ hybridization assay that uses combinatorial + FISH labeling with error resistant encoding schemes for highly multiplexed + single-molecule imaging. + meaning: OBI:0003604 + OBI:0003605: + title: single molecule fluorescence in situ hybridization + description: A fluorescence in-situ hybridization assay that detects single + RNA molecules in fixed cells, allowing for both the quantification and localization + at the single-cell level and single-molecule resolution. + meaning: OBI:0003605 + OBI:0003612: + title: electron microscopy assay determining the 3D structure of a T cell + epitope:MHC:TCR complex + description: An electron-microscopy 3D molecular structure determination assay + that characterizes the 3-dimensional molecular structrue of a T cell epitope:MHC:TCR + complex. + meaning: OBI:0003612 + OBI:0003613: + title: electron microscopy assay determining the 3D structure of a MHC:ligand + complex + description: An electron-microscopy 3D molecular structure determination assay + that characterizes the 3-dimensional molecular structrue of a MHC:ligand + complex. + meaning: OBI:0003613 + OBI:0003659: + title: in vitro CRISPR screen assay + description: An assay in which cells expressing a Cas system are infected + with a library of guide RNAs with the intent of causing a perturbation at + the target of the guide RNAs. + meaning: OBI:0003659 + OBI:0003660: + title: in vitro CRISPR screen using single-cell RNA-seq + description: An in vitro CRISPR screen assay that uses single-cell RNA-Seq + to detect induced changes in gene expression. + meaning: OBI:0003660 + OBI:0003661: + title: in vitro CRISPR screen using flow cytometry + description: An in vitro CRISPR screen assay that uses flow cytometry to detect + induced changes in gene expression of the targeted genes. + meaning: OBI:0003661 + OBI:0003662: + title: single-nucleus methylcytosine and transcriptome sequencing assay + description: A DNA methylation profiling by high throughput sequencing assay + that measures the cytosine DNA methylation and gene expression signature + of single nuclei. + meaning: OBI:0003662 + OBI:0003686: + title: chromatin accessibility assay + description: An assay that determines which regions of a DNA molecule are + in the form of euchromatin and thus able to make direct physical contact + with (i.e. are accessible to) other molecules such as RNA polymerase, transcription + factors, etc. + meaning: OBI:0003686 + OBI:0003687: + title: m6A-MTase sequencing assay + description: A DNA methylation profiling assay in which chromatin stencils + are created by treating nuclei with m6A methyltransferase (MTase) and then + sequenced using single-molecule circular consensus sequencing to identify + regions of accessible DNA at nucleotide resolution. + meaning: OBI:0003687 + OBI:0003709: + title: assessment of learning and/or memory response in an organism + description: A nervous system functionality assessment of learning or memory + in an organism + meaning: OBI:0003709 + OBI:0003710: + title: assessment of startle response in an organism + description: A nervous system functionality assessment of auditory startle + response in an organism in an anechoic chamber by exposing to sound. + meaning: OBI:0003710 + OBI:0003711: + title: grip strength assay + description: A nervous system functionality assessment that uses the grip + strength of a lab animal to measure neuromuscular function. + meaning: OBI:0003711 + OBI:0003712: + title: assay of organismal behavior + description: A physical examination to assess behavior quality in a live organism. + meaning: OBI:0003712 + OBI:0003713: + title: organism development assay + description: A physical examination of an organism that provides information + about some developmental process in that organism. + meaning: OBI:0003713 + OBI:0003714: + title: reproductive assay + description: A physical examination of an organism that provides information + about some reproductive process in that organism. + meaning: OBI:0003714 + OBI:0003715: + title: vital sign assay + description: An assay of a organism to measure basic physiological functions + such as breathing, pulse, etc. (phylum bilateral). + meaning: OBI:0003715 + OBI:0003716: + title: blood pressure assay + description: A vital sign assay that determines the blood pressure (force + of blood against the artery walls) of an organism. + meaning: OBI:0003716 + OBI:0003717: + title: heart rate variability assay + description: A pulse rate assay that measures beat to beat variability in + heart beats. + meaning: OBI:0003717 + OBI:0003718: + title: pulse rate assay + description: A vital sign assay that measures the heart beat rate of an organism. + meaning: OBI:0003718 + OBI:0003719: + title: respiratory assay + description: A vital sign assay that measures the quality of respiration / + respiratory system of an organism + meaning: OBI:0003719 + OBI:0003720: + title: cell differentiation assay + description: A cytometry assay that monitors the differentiation stage of + cells in culture. + meaning: OBI:0003720 + OBI:0003721: + title: cell based DNA damage assay + description: A cytometry assay that measures DNA damage in cells. + meaning: OBI:0003721 + OBI:0003722: + title: natural killer cell count assay + description: A cytometry assay to determine the number of natural killer cells + in a specimen + meaning: OBI:0003722 + OBI:0003723: + title: natural killer cell percentage assay + description: A cytometry assay that measures the percentage of natural killer + cells in a specimen. + meaning: OBI:0003723 + OBI:0003724: + title: sperm count assay + description: A cytometry assay to count the number of mature sperm in a specimen. + meaning: OBI:0003724 + OBI:0003725: + title: survey administration assay + description: An assay that obtains data from one or more participants by using + a survey or questionnaire + meaning: OBI:0003725 + OBI:0003734: + title: clinical history collection assay + description: A clinical assay that produces a data item indicating whether + an organism has ever had a particular disease, lifestyle factor, immune + exposure, or medical procedure. + meaning: OBI:0003734 + OBI:0003735: + title: disease severity assay + description: An assay that measures the severity of a disease in an organism. + meaning: OBI:0003735 + OBI:0003736: + title: genetic characteristic assay + description: An assay that produces information about a genetic characteristic + of an organism. + meaning: OBI:0003736 + OBI:0003738: + title: blood type assay + description: An assay that classifies an organism's blood within one or more + blood group classification systems by identifying antigens present in the + blood. + meaning: OBI:0003738 + OBI:0003741: + title: capillary electrophoresis mass spectrometry assay + description: A mass spectrometry assay where a sample mixture is first separated + by capillary electrophoresis before being analysed by mass spectrometry. + meaning: OBI:0003741 + OBI:0003750: + title: neurite outgrowth assay + description: A cell differentiation assay that detects neurite outgrowth and/or + branching + meaning: OBI:0003750 + OBI:0003751: + title: neuronal differentiation assay + description: A cell differentiation assay that measures differentiation of + neurons. + meaning: OBI:0003751 + OBI:0003752: + title: oligodendrocyte differentiation assay + description: A cell differentiation assay that measures differentiation of + oligodendrocytes. + meaning: OBI:0003752 + OBI:0003753: + title: regulation of synapse maturation assay + description: A cell differentiation assay that measures synapse formation + and maturation using antibodies to protein found in synaptic puncta. + meaning: OBI:0003753 + OBI:0003754: + title: Ames assay + description: A cell based DNA damage assay that uses several constructed bacterial + strains to detect mutations. + meaning: OBI:0003754 + OBI:0003755: + title: micronucleus assay + description: A cell based DNA damage assay in eukaryotic cells that detects + cytoplasmic micronuclei. + meaning: OBI:0003755 + OBI:0003756: + title: PIG-a assay + description: A cell based DNA damage assay in eukaryotic cells that detects + loss of function through mutation of the X-linked (single-copy) Pig-a gene. + meaning: OBI:0003756 + OBI:0003757: + title: cell viability assay based on detection of resorufin + description: A cell viability assay using the NAD(P)H-aided conversion of + resazurin to resorufin by metabolically active cells. + meaning: OBI:0003757 + OBI:0003758: + title: cell death assay using caspase abundance to detect apoptosis + description: A cell death assay that uses fluorescence imaging-based detection + of caspases involved in apoptosis + meaning: OBI:0003758 + OBI:0003759: + title: cell death assay + description: A cell viability assay which measures the number or proportion + of dead cells in a population. + meaning: OBI:0003759 + OBI:0003760: + title: cell viability assay based on detection of resorufin using fluorescence + to qualtify the presence of resorufin. + description: A cell viability assay based on detection of resorufin that uses + fluorescence to quantify resorufin + meaning: OBI:0003760 + OBI:0003761: + title: cell death assay detecting lactate dehydrogenase (LDH) release + description: A cell death assay that measures the release of intracellular + LDH. + meaning: OBI:0003761 + OBI:0003762: + title: cell death assay detecting lactate dehydrogenase (LDH) release using + absorbance detection. + description: A cell death assay detecting lactate dehydrogenase (LDH) release + by absorbance of substrate + meaning: OBI:0003762 + OBI:0003763: + title: ovulation assessment in rodent assay + description: A histological assay that measures the number of corpora lutea + (UBERON:0002512) in the ovary of an organism; corpora lutea develop from + the postovulatory follicle. + meaning: OBI:0003763 + OBI:0003764: + title: macroscopic examination of material anatomical entity assay + description: An assay that performs a macroscopic assessment of a material + anatomical entity using the sense of sight. + meaning: OBI:0003764 + OBI:0003765: + title: pathological macroscopic examination of specimen assay + description: A macroscopic examination of material anatomical entity assay + performed on a post-mortem anatomical specimen. + meaning: OBI:0003765 + OBI:0003766: + title: estrous cycle assay based on tissue morphology + description: A histological assay that evaluates cells in the vaginal endometrium + to assess the estrous cycle phase the subject was in at the time of specimen + collection. + meaning: OBI:0003766 + OBI:0003767: + title: organism development assay in late embryo + description: An organism development assay performed with a late embryo stage + subject. + meaning: OBI:0003767 + OBI:0003768: + title: pregnancy assessment based on tissue morphology assay + description: A histological assay that measures the number of implantation + sites in an organism. + meaning: OBI:0003768 + OBI:0003769: + title: cell death assay using vital dye + description: A cell death assay that uses the Trypan blue vital dye to stain + cells which have lost membrane integrity. + meaning: OBI:0003769 + OBI:0003770: + title: neurite length assay + description: A cytometry assay that uses a distance measurement assay to determine + the length of a neurite. + meaning: OBI:0003770 + OBI:0003771: + title: neurite degree of arborization assay + description: A cytometry assay that measures the degree of arborization, or + branching, in neuronal processes + meaning: OBI:0003771 + OBI:0003772: + title: neurite count assay + description: A cytometry assay that measures the number of neurites in a cultured + specimen. + meaning: OBI:0003772 + OBI:0003773: + title: neuron count assay + description: A cytometry assay that measures the number of neurons in a sample + meaning: OBI:0003773 + OBI:0003774: + title: cell-body-associated presynaptic puncta count assay + description: A regulation of synapse maturation assay that determines the + number of synaptic puncta in the cell body compartment of a neuron. + meaning: OBI:0003774 + OBI:0003775: + title: dendrite-associated presynaptic puncta count assay + description: A regulation of synapse maturation assay that determines the + number of synaptic puncta in the dendritic compartment of a neuron. + meaning: OBI:0003775 + OBI:0003776: + title: synapse per neuron assay + description: A regulation of synapse maturation assay that determines the + number of synaptic puncta in a culture and normalizes it by the number of + neurons in the culture. + meaning: OBI:0003776 + OBI:0003777: + title: absorbance quality detection assay + description: An assay that measures the absorbance quality of the evaluant + meaning: OBI:0003777 + OBI:0003778: + title: hormone assay + description: The analyte assay that measures the abundance of a hormone in + a specimen. + meaning: OBI:0003778 + OBI:0003779: + title: chemiluminescent assay + description: An analyte assay that detects a substance by measuring the release + of light triggered by a chemical reaction. + meaning: OBI:0003779 + OBI:0003780: + title: electrochemiluminescence assay + description: A chemiluminescent assay that detects a substance by measuring + the release of light triggered by an electrochemical reaction. + meaning: OBI:0003780 + OBI:0003781: + title: proteomics by mass spectrometry assay + description: A mass spectrometry assay that identifies and measures proteins. + meaning: OBI:0003781 + OBI:0003782: + title: metabolomics by mass spectrometry assay + description: A mass spectrometry assay that identifies and measures metabolites. + meaning: OBI:0003782 + OBI:0003788: + title: cellular indexing of transcriptomes and epitopes by sequencing + description: An assay performed on single cells that simultaneously measures + transcript expression via single-cell RNA sequencing and profiles surface + proteins via sequencing of DNA-barcodes attached to antibodies recognizing + particular surface proteins from individual cells. + meaning: OBI:0003788 + OBI:0003789: + title: immune receptor repertoire profiling assay + description: An assay that determines the sequence of a DNA or RNA molecules + that encode the repertoire of B cell receptors or T cell receptors within + an input sample. + meaning: OBI:0003789 + OBI:0003790: + title: antibody-dependent complement deposition assay + description: An assay measuring antibody-dependent complement-dependent cytotoxicity. + meaning: OBI:0003790 + OBI:0003791: + title: bacterial flagellin detection in plasma assay + description: An analyte assay measuring bacterial flagellin in a plasma sample. + meaning: OBI:0003791 + OBI:0003792: + title: bacterial flagellin detection in feces assay + description: An analyte assay measuring bacterial flagellin in a feces sample. + meaning: OBI:0003792 + OBI:0003793: + title: bacterial lipopolysaccharide detection in plasma assay + description: An analyte assay measuring bacterial lipopolysaccharide in a + plasma sample. + meaning: OBI:0003793 + OBI:0003794: + title: bacterial lipopolysaccharide detection in feces assay + description: An analyte assay measuring bacterial lipopolysaccharide in a + feces sample. + meaning: OBI:0003794 + OBI:0003795: + title: adenosine deaminase activity assay + description: An analyte assay measuring adenosine deaminase activity in a + sample. + meaning: OBI:0003795 + OBI:0003796: + title: pathogen neutralization assay + description: An assay that measures neutralization of a pathogen. + meaning: OBI:0003796 + OBI:0003797: + title: bacterial neutralization assay + description: A pathogen neutralization assay measuring neutralization of bacteria. + meaning: OBI:0003797 + OBI:0003798: + title: viral plaque assay + description: An analyte assay measuring the number of discrete viral plaques. + meaning: OBI:0003798 + OBI:0003799: + title: analyte detection by flow based bead assay + description: An analyte assay that uses beads to measure the concentration + of an analyte with a flow cytometer. + meaning: OBI:0003799 + OBI:0003801: + title: urine opacity assay + description: A histological assay with urine evaluant that measures opacity + of the urine + meaning: OBI:0003801 + OBI:0003802: + title: urine color assay + description: A histological assay with urine evaluant that measures color. + meaning: OBI:0003802 + OBI:0003803: + title: urine histological assay + description: A histological assay with urine sediment as evaluant. + meaning: OBI:0003803 + OBI:0003804: + title: color detection assay + description: An assay that measures the color of the evaluant + meaning: OBI:0003804 + OBI:0003805: + title: opacity determination assay + description: An assay that measures the opacity of the evaluant + meaning: OBI:0003805 + OBI:0003811: + title: estrous cycle count assay + description: An estrous cycle assay based on tissue morphology that determines + the number of estrous cycles observed in a defined time. + meaning: OBI:0003811 + OBI:0003812: + title: estrous cycle duration assay + description: An estrous cycle assay based on tissue morphology that determines + the average length of a full estrous cycle observed in a defined time. + meaning: OBI:0003812 + OBI:0003813: + title: organism development assay in late embryo based on examination of surface + structure + description: An organism development assay in late embryo that evaluates only + the external surface structure of the organism + meaning: OBI:0003813 + OBI:0003814: + title: organism development assay in late embryo based on examination of skeletal + system + description: An organism development assay in late embryo that evaluates the + skeletal system of the organism + meaning: OBI:0003814 + OBI:0003815: + title: organism development assay in late embryo based on examination of anatomical + system + description: An organism development assay in late embryo that evaluates the + anatomical system of the organism + meaning: OBI:0003815 + OBI:0003816: + title: distance measurement assay + description: An assay that measures the space between two entities. + meaning: OBI:0003816 + OBI:0003817: + title: length measurement assay + description: An assay that measures the distance between two points. + meaning: OBI:0003817 + OBI:0003818: + title: crown rump length + description: A length measurement assay that measures the length of a neonate + or fetus from crown of head to base of torso (rump) + meaning: OBI:0003818 + OBI:0003819: + title: path length assay + description: An assay that measures the distance traveled in a defined period + of time. + meaning: OBI:0003819 + OBI:0003820: + title: cell migration assay + description: A distance measurement assay in which the migration of cells + in culture is monitored by measuring the distance between the start position + and the cell's location when observed. + meaning: OBI:0003820 + OBI:0003821: + title: oligodendrocyte migration assay + description: A cell migration assay that measures migration of an oligodendrocyte + meaning: OBI:0003821 + OBI:0003822: + title: radial glial migration assay + description: A cell migration assay that measures migration of a radial glia + cell + meaning: OBI:0003822 + OBI:0003823: + title: neuron migration assay + description: A cell migration assay that measures migration of a neuron + meaning: OBI:0003823 + OBI:0003824: + title: neural crest cell migration assay + description: A cell migration assay that measures migration of a neural crest + cell + meaning: OBI:0003824 + OBI:0003825: + title: acidity quality assay + description: An assay that measures the acidity of a specimen on the pH scale. + meaning: OBI:0003825 + OBI:0003826: + title: specific gravity assay + description: An assay that measures the specific gravity of a sample. + meaning: OBI:0003826 + OBI:0003827: + title: speed measurement assay + description: An assay to determine the speed of an evaluant. + meaning: OBI:0003827 + OBI:0003828: + title: velocity measurement assay + description: An assay to measure the velocity of an evaluant + meaning: OBI:0003828 + OBI:0003829: + title: luminescence detection assay + description: An assay that measures the luminescence of the evaluant + meaning: OBI:0003829 + OBI:0003830: + title: cell viability assay using luciferase to detect ATP in the cell + description: A cell viability assay that uses an ATP bioluminescence assay + to detect ATP in the living cell + meaning: OBI:0003830 + OBI:0003831: + title: population count assay + description: An assay that measures the number of elements in a portion of + a population + meaning: OBI:0003831 + OBI:0003832: + title: hemolysis assay + description: A hematology assay that measures the fragility of red blood cells + by observing spillage of hemoglobin from burst cells. + meaning: OBI:0003832 + OBI:0003833: + title: neuron action potential rate assay + description: An electrophysiology assay that measures action potential events + in neurons during a time period. + meaning: OBI:0003833 + OBI:0003834: + title: neuron burst rate assay + description: An electrophysiology assay that measures the number of action + potential bursts in neurons during a time period. + meaning: OBI:0003834 + OBI:0003835: + title: neuron interburst interval assay + description: An electrophysiology assay that measures the elapsed time between + consecutive action potential bursts in neurons. + meaning: OBI:0003835 + OBI:0003836: + title: neuron burst duration assay + description: An electrophysiology assay that measures the time elapsed between + the first action potential in a neuron burst and the last in that burst. + meaning: OBI:0003836 + OBI:0003837: + title: action potential interval assay + description: An electrophysiology assay that measures the time elapsed between + the peaks of consecutive action potential spikes in a neuron burst. + meaning: OBI:0003837 + OBI:0003838: + title: rate of action potentials in neuron burst assay + description: An electrophysiology assay that measures the number of action + potential spikes occurring within a neuron burst + meaning: OBI:0003838 + OBI:0003839: + title: body mass assay + description: A mass measurement assay with evaluant an individual organism. + meaning: OBI:0003839 + OBI:0003840: + title: body mass change assay + description: A body mass assay that measures the change in body mass for a + subject over a period of time. + meaning: OBI:0003840 + OBI:0003841: + title: body weight assay at death + description: A body weight assay with evaluant individual organism specimen + with quality dead. + meaning: OBI:0003841 + OBI:0003842: + title: tissue mass assay + description: A mass measurement assay with evaluant tissue or bodily fluid + specimen. + meaning: OBI:0003842 + OBI:0003843: + title: tissue mass percent of body mass assay + description: A mass measurement assay with evaluant tissue expressed as a + percentage of the body weight of the organism from which the specimen was + derived. + meaning: OBI:0003843 + OBI:0003844: + title: developmental marker age of attainment assessment + description: An age determination assay which determines the age of the subject + at the time of the change from a state where it did not have a developmental + stage marker to one in which it does. + meaning: OBI:0003844 + OBI:0003850: + title: cytochrome P450 assay + description: A protein assay that measures the abundance of cytochrome P450 + in a specimen. + meaning: OBI:0003850 + OBI:0003851: + title: growth factor assay + description: An analyte assay to measure the abundance of one or more growth + factors in a volume of sample. + meaning: OBI:0003851 + OBI:0003852: + title: Hoechst dye assay + description: A fluorescence imaging-based cell morphology assay that uses + Hoechst dye 33342 + meaning: OBI:0003852 + OBI:0003853: + title: hypersensitivity assay + description: An immune response assay to assess the hypersensitivity response + in an organism or cell culture. + meaning: OBI:0003853 + OBI:0003882: + title: super-resolution microscopy assay + description: A type of light microscopy assay where the images are taken with + a resolution higher than the diffraction limit. + meaning: OBI:0003882 + OBI:0003885: + title: 1M7 RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 1-methyl-7-nitroisatoic anhydride as reagent and + chemical probe + meaning: OBI:0003885 + OBI:0003886: + title: NAI RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 2-methylnicotinic acid imidazolide as reagent and + chemical probe + meaning: OBI:0003886 + OBI:0003887: + title: NAI-N3 RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 2-(azidomethyl)nicotinic acid imidazolide as reagent + and chemical probe + meaning: OBI:0003887 + OBI:0003888: + title: 2A3 RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 2-aminopyridine-3-carboxylic acid imidazolide as + reagent and chemical probe + meaning: OBI:0003888 + OBI:0003889: + title: I5 RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using indoline-5-carboxylic acid imidazolide as reagent + and chemical probe + meaning: OBI:0003889 + OBI:0003890: + title: 1M4 RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 1-methylimidazole-4-carboxylic acid imidazolide as + reagent and chemical probe + meaning: OBI:0003890 + OBI:0003891: + title: 6A3 RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 6-aminopyridine-3-carboxylic acid imidazolide as + reagent and chemical probe + meaning: OBI:0003891 + OBI:0003892: + title: B5 RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using benzotriazole-5-carboxylic acid imidazolide as reagent + and chemical probe + meaning: OBI:0003892 + OBI:0003893: + title: NIC RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using nicotinic acid imidazolide as reagent and chemical + probe + meaning: OBI:0003893 + OBI:0003894: + title: BzCN RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using benzoyl cyanide as reagent and chemical probe + meaning: OBI:0003894 + OBI:0003895: + title: 1M6 RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 1-methyl-6-nitroisatoic anhydride as reagent and + chemical probe + meaning: OBI:0003895 + OBI:0003896: + title: 5NIA RNA structure mapping assay + description: A single-nucleotide-resolution ribonucleic acid structure mapping + assay that determines nucleic acid secondary structure at the nucleotide + resolution scale using 5-nitroisatoic anhydride as reagent and chemical + probe + meaning: OBI:0003896 + OBI:0003897: + title: cell count assay + description: An assay that measures the number of cells in a portion of a + cell culture or tissue or bodily fluid + meaning: OBI:0003897 + OBI:0003898: + title: differential leukocyte count assay + description: A hematology assay that measures the percentage of classes of + leukocytes in a sample. + meaning: OBI:0003898 + OBI:0003899: + title: electrocardiogram assay + description: An electrophysiology assay that measures heart activity using + electrodes placed to detect electrical signals from the heart. + meaning: OBI:0003899 + OBI:0003900: + title: telemeter sensor detection assay + description: An assay which uses an implanted telemeter to measure physiological + data in a living organism and transmit the measures via radio waves to a + recording device. + meaning: OBI:0003900 + OBI:0003901: + title: multi-electrode array assay + description: A multi-unit recording assay using a multi-electrode array (MEA) + on the surface of a well on a cell culture plate. + meaning: OBI:0003901 + OBI:0003902: + title: transepithelial / transendothelial electrical resistance (TEER) assay + description: An extracellular electrophysiology recording assay to measure + the integrity of a cell monolayer + meaning: OBI:0003902 + OBI:0003903: + title: count of multi-electrode plate electrodes detecting action potential + assay + description: A multi-electrode array assay that measures the number of electrodes + in a well where the mean rate of action potentials is at least 5 spikes + per minute. + meaning: OBI:0003903 + OBI:0003904: + title: count of multi-electrode plate electrodes detecting neuron burst assay + description: A multi-electrode array assay that measures the number of electrodes + in a well where the burst rate is at least 0.5 bursts per minute. + meaning: OBI:0003904 + OBI:0003905: + title: neural network spike rate assay + description: An multi-electrode assay that measures the number of events when + multiple electrodes simultaneously detect an action potential during a time + period. + meaning: OBI:0003905 + OBI:0003906: + title: neural network spike duration assay + description: A multi-electrode assay that measures the mean duration of events + when multiple electrodes detect an action potential + meaning: OBI:0003906 + OBI:0003907: + title: count of multi-electrode plate electrodes detecting spike peak assay + description: A multi-electrode array assay that measures the average number + of electrodes detecting a network spike, measured at the peak of a network + spike. + meaning: OBI:0003907 + OBI:0003908: + title: mean interspike interval in network spike + description: A multi-electrode assay that measures the average interval between + network spikes, events where multiple electrodes simultaneously detect an + action potential. + meaning: OBI:0003908 + OBI:0003909: + title: bile acid concentration assay + description: An analyte assay that measures the abundance of bile acid in + a volume of sample. + meaning: OBI:0003909 + OBI:0003910: + title: urea nitrogen assay + description: An analyte assay that measures the abundance of urea nitrogen. + meaning: OBI:0003910 + OBI:0003911: + title: urea nitrogen concentration assay + description: A urea nitrogen assay that measures the abundance of urea nitrogen + in a specimen + meaning: OBI:0003911 + OBI:0003912: + title: in vitro CRISPR screen using single-cell ATAC-seq + description: An in vitro CRISPR screen assay that uses single-cell ATAC-Seq + to detect induced changes in chromatin accessibility + meaning: OBI:0003912 + OBI:0003913: + title: single-cell metabolically labeled new RNA tagging sequencing + description: A single-cell transcription profiling by RNA sequencing assay + in which mRNA transcripts are metabolically labeled with 4-thiouridine to + investigate temporal RNA dynamics. + meaning: OBI:0003913 + OBI:0003914: + title: single cell massively parallel reporter assay + description: A massively parallel reporter assay in which libraries of reporter + constructs are transfected into samples and then measured via single cell + transcriptomic methods to enable discovery of cell-specific transcriptional + regulatory activity + meaning: OBI:0003914 + OBI:0003915: + title: ultra high throughput single-cell combinatorial indexing RNA sequencing + 3 assay + description: A single-cell transcription profiling by RNA sequencing assay + that involves single cell combinatorial indexing ('sci-') to profile the + transcriptomes of single cells or nuclei in an ultra high-throughput manor + via changes to the method, as compared to sci-RNA-seq, that include extraction + of nuclei directly from fresh tissue, use of hairpin ligation for the third + level of indexing, optimization of enxymatic reactions, and use of dilution + instead of FACS sorting. + meaning: OBI:0003915 + OBI:0302736: + title: DNA damage comet assay + description: A cell based DNA damage assay that measures DNA damage (DNA breakage) + in eucaryotic cells exposed to a challenge by determining the size and shape + of DNA migration by detecting fluorescently labeled DNA from a cell placed + in an electric field using gel electrophoresis + meaning: OBI:0302736 + OBI:0302737: + title: PCR-SSCP assay + description: An assay that identifies DNA sequence variation (mutation, deletion, + insertions) in target DNA sequences amplified using polymerase chain reaction + using gel electrophoresis and denaturating conditions + meaning: OBI:0302737 + OBI:0600002: + title: tumor grading + description: An assay that determines the grade (severity/stage) of a tumor + sample, used in cancer biology to describe abnormalities/qualities of tumor + cells or tissues. Values can be described by terms from NCI Thesaurus. + meaning: OBI:0600002 + OBI:0600017: + title: assay detecting a molecular label + description: An assay that detects the presence or a quality of a molecular + label which is a proxy for the detection of the molecular target to which + the label is attached + meaning: OBI:0600017 + OBI:0600020: + title: histological assay + description: An assay that uses visual examination of cells or tissue (or + images of them) to make an assessment regarding a quality of the cells or + tissue. This assay can include steps of staining, imaging, and judgement. + meaning: OBI:0600020 + OBI:0600025: + title: substance detection assay + description: An assay that detects a specified substance + meaning: OBI:0600025 + OBI:0600026: + title: longitudinal mass measurement assay + description: An assay that measures the mass of a material at two or more + time points + meaning: OBI:0600026 + OBI:0600031: + title: enzyme-linked immunospot assay + description: A cytometry assay in which cells are cultured on a surface coated + with a capture antibody binding a secretory material of interest which subsequently + gets stained resulting in a spot for each cell producing the secretory material + of interest. + meaning: OBI:0600031 + OBI:0600045: + title: 3D structure determination assay + description: An assay that determines the 3-dimensional configuration of an + input material. + meaning: OBI:0600045 + OBI:0600047: + title: sequencing assay + description: An assay the uses chemical or biochemical means to infer the + sequence of a biomaterial + meaning: OBI:0600047 + OBI:1110013: + title: ELISPOT assay measuring epitope specific interleukin-2 production by + T cells + description: An enzyme-linked immunospot assay that detects interleukin-2 + production by T cells. + meaning: OBI:1110013 + OBI:1110037: + title: assay measuring binding of a T cell epitope:MHC:TCR complex + description: A T cell epitope assay that measures the binding of T cell receptor + to an epitope. + meaning: OBI:1110037 + OBI:1110059: + title: ELISPOT assay measuring epitope specific interferon-gamma production + by T cells + description: An enzyme-linked immunospot assay that detects interferon-gamma + production by T cells. + meaning: OBI:1110059 + OBI:1110124: + title: assay measuring qualitative binding of a T cell epitope:MHC:TCR complex + description: An assay that detects the binding of a MHC:epitope complex with + a T cell receptor, and produces a qualitative measurement of the binding + as an output. + meaning: OBI:1110124 + OBI:1110125: + title: assay measuring MHC ligand processing and presentation + description: A MHC ligand assay that determines what ligands are processed + and loaded onto MHC molecules by eluting ligands and identifying them. + meaning: OBI:1110125 + OBI:1110126: + title: assay measuring binding of a MHC:ligand complex + description: A MHC ligand assay that detects the binding of a ligand to an + MHC molecule. + meaning: OBI:1110126 + OBI:1110127: + title: assay measuring binding of a B cell epitope:antibody complex + description: A B cell epitope assay that measures the binding of an antibody + receptor to an epitope. + meaning: OBI:1110127 + OBI:1110128: + title: immune epitope assay + description: An assay that detects the binding of an epitope to an adaptive + immune receptor, or an immune process resulting from such a binding event, + or characterizes the structrue of the complex resulting from such a binding + event. + meaning: OBI:1110128 + OBI:1110129: + title: assay measuring epitope specific cytokine production by T cells + description: A T cell epitope assay that detects cytokine production by T + cells. + meaning: OBI:1110129 + OBI:1110130: + title: assay measuring epitope specific T cell killing + description: A T cell epitope dependent biological activity assay that detects + the killing of an antigen presenting cell (APC) by a T cell whose TCR recognizes + an epitope presented by the APC. + meaning: OBI:1110130 + OBI:1110131: + title: assay measuring epitope specific proliferation of T cells + description: A T cell epitope dependent biological activity assay that detects + T cell proliferation. + meaning: OBI:1110131 + OBI:1110150: + title: 51 chromium assay measuring epitope specific T cell killing + description: A chromium release assay that detects the killing of an antigen + presenting cell (APC) by a T cell whose TCR recognizes an epitope presented + by the APC. + meaning: OBI:1110150 + OBI:1110151: + title: ELISA measuring epitope specific interferon-gamma production by T cells + description: An enzyme-linked immunosorbent assay that detects interferon-gamma + production by T cells. + meaning: OBI:1110151 + OBI:1110152: + title: ELISA measuring epitope specific interleukin-2 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-2 + production by T cells. + meaning: OBI:1110152 + OBI:1110153: + title: ELISA measuring epitope specific interleukin-4 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-4 + production by T cells. + meaning: OBI:1110153 + OBI:1110154: + title: ELISA measuring epitope specific interleukin-5 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-5 + production by T cells. + meaning: OBI:1110154 + OBI:1110155: + title: ELISA measuring epitope specific tumor necrosis factor alpha production + by T cells + description: An enzyme-linked immunosorbent assay that detects tumor necrosis + factor alpha production by T cells. + meaning: OBI:1110155 + OBI:1110156: + title: ELISA measuring epitope specific interleukin-10 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-10 + production by T cells. + meaning: OBI:1110156 + OBI:1110157: + title: ELISA measuring epitope specific granulocyte macrophage colony-stimulating + factor production by T cells + description: An enzyme-linked immunosorbent assay that detects granulocyte + macrophage colony stimulating factor production by T cells. + meaning: OBI:1110157 + OBI:1110158: + title: ELISA measuring epitope specific interleukin-6 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-6 + production by T cells. + meaning: OBI:1110158 + OBI:1110159: + title: ELISA measuring epitope specific interleukin-13 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-13 + production by T cells. + meaning: OBI:1110159 + OBI:1110160: + title: ELISA measuring epitope specific interleukin-12 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-12 + production by T cells. + meaning: OBI:1110160 + OBI:1110161: + title: ELISA measuring epitope specific interleukin-1 beta production by T + cells + description: An enzyme-linked immunosorbent assay that detects interleukin-1 + beta production by T cells. + meaning: OBI:1110161 + OBI:1110162: + title: ELISA measuring epitope specific interleukin-17 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-17 + production by T cells. + meaning: OBI:1110162 + OBI:1110163: + title: ELISA measuring epitope specific interleukin-18 production by T cells + description: An enzyme-linked immunosorbent assay that detects interleukin-18 + production by T cells. + meaning: OBI:1110163 + OBI:1110167: + title: ELISPOT assay measuring epitope specific interleukin-4 production by + T cells + description: An enzyme-linked immunospot assay that detects interleukin-4 + production by T cells. + meaning: OBI:1110167 + OBI:1110168: + title: ELISPOT assay measuring epitope specific tumor necrosis factor alpha + production by T cells + description: An enzyme-linked immunospot assay that detects tumor necrosis + factor alpha production by T cells + meaning: OBI:1110168 + OBI:1110170: + title: ELISPOT assay measuring epitope specific interleukin-10 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-10 + production by T cells. + meaning: OBI:1110170 + OBI:1110171: + title: ELISPOT assay measuring epitope specific interleukin-13 production + by T cells + description: An enzyme-linked immunospot assay that detects interleukin-13 + production by T cells. + meaning: OBI:1110171 + OBI:1110172: + title: intracellular cytokine staining assay measuring epitope specific interferon-gamma + production by T cells + description: A flow cytometry assay that detects interferon-gamma production + by T cells. + meaning: OBI:1110172 + OBI:1110173: + title: intracellular cytokine staining assay measuring epitope specific interleukin-2 + production by T cells + description: A flow cytometry assay that detects interleukin-2 production + by T cells. + meaning: OBI:1110173 + OBI:1110174: + title: intracellular cytokine staining assay measuring epitope specific tumor + necrosis factor alpha production by T cells + description: A flow cytometry assay that detects tumor necrosis factor alpha + production by T cells. + meaning: OBI:1110174 + OBI:1110175: + title: intracellular cytokine staining assay measuring epitope specific interleukin-4 + production by T cells + description: A flow cytometry assay that detects interleukin-4 production + by T cells. + meaning: OBI:1110175 + OBI:1110177: + title: intracellular cytokine staining assay measuring epitope specific interleukin-10 + production by T cells + description: A flow cytometry assay that detects interleukin-10 production + by T cells. + meaning: OBI:1110177 + OBI:1110178: + title: intracellular cytokine staining assay measuring epitope specific interleukin-17 + production by T cells + description: A flow cytometry assay that detects interleukin-17 production + by T cells. + meaning: OBI:1110178 + OBI:1110179: + title: MHC tetramer/multimer assay measuring binding of a T cell epitope:MHC:TCR + complex + description: A MHC tetramer/multimer assay that measures the binding of an + epitope:MHC complex binding with a T cell receptor. + meaning: OBI:1110179 + OBI:1110180: + title: 3H-thymidine assay measuring epitope specific proliferation of T cells + description: A tritiated thymidine incorporation assay that detects T cell + epitope specific proliferation in vitro. + meaning: OBI:1110180 + OBI:1110181: + title: BrdU assay measuring epitope specific proliferation of T cells + description: A BrdU incorporation assay that detects T cell epitope specific + proliferation in vitro. + meaning: OBI:1110181 + OBI:1110207: + title: assay detecting IFN-gamma production + description: An assay that determines information about the production of + the cytokine interferon gamma + meaning: OBI:1110207 + OBI:2100001: + title: carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + meaning: OBI:2100001 + OBI:2100002: + title: sodium(1+) assay + description: An analyte assay that measures the abundance of sodium(1+) + meaning: OBI:2100002 + OBI:2100003: + title: creatinine assay + description: An analyte assay that measures the abundance of creatinine + meaning: OBI:2100003 + OBI:2100004: + title: potassium(1+) assay + description: An analyte assay that measures the abundance of potassium(1+) + meaning: OBI:2100004 + OBI:2100005: + title: basophil count assay + description: A cytometry assay that measures the count of basophils + meaning: OBI:2100005 + OBI:2100006: + title: neutrophil count assay + description: A cytometry assay that measures the count of neutrophils + meaning: OBI:2100006 + OBI:2100007: + title: eosinophil count assay + description: A cytometry assay that measures the count of eosinophils + meaning: OBI:2100007 + OBI:2100008: + title: lymphocyte count assay + description: A cytometry assay that measures the count of lymphocytes + meaning: OBI:2100008 + OBI:2100009: + title: monocyte count assay + description: A cytometry assay that measures the count of monocytes + meaning: OBI:2100009 + OBI:2100010: + title: chloride assay + description: An analyte assay that measures the abundance of chloride + meaning: OBI:2100010 + OBI:2100011: + title: erythrocyte count assay + description: A cytometry assay that measures the count of erythrocytes + meaning: OBI:2100011 + OBI:2100012: + title: platelet count assay + description: A cytometry assay that measures the count of platelets + meaning: OBI:2100012 + OBI:2100013: + title: leukocyte count assay + description: A cytometry assay that measures the count of leukocytes + meaning: OBI:2100013 + OBI:2100014: + title: hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin + meaning: OBI:2100014 + OBI:2100015: + title: phosphate ion assay + description: An analyte assay that measures the abundance of phosphate ion + meaning: OBI:2100015 + OBI:2100016: + title: alanine aminotransferase assay + description: An analyte assay that measures the abundance of alanine aminotransferase + meaning: OBI:2100016 + OBI:2100017: + title: alkaline phosphatase (human) assay + description: An analyte assay that measures the abundance of alkaline phosphatase + (human) + meaning: OBI:2100017 + OBI:2100018: + title: bilirubin IXalpha assay + description: An analyte assay that measures the abundance of bilirubin IXalpha + meaning: OBI:2100018 + OBI:2100019: + title: aspartate aminotransferase (human) assay + description: An analyte assay that measures the abundance of aspartate aminotransferase + (human) + meaning: OBI:2100019 + OBI:2100020: + title: glucose assay + description: An analyte assay that measures the abundance of glucose + meaning: OBI:2100020 + OBI:2100021: + title: magnesium cation assay + description: An analyte assay that measures the abundance of magnesium cation + meaning: OBI:2100021 + OBI:2100022: + title: albumin assay + description: An analyte assay that measures the abundance of albumin + meaning: OBI:2100022 + OBI:2100023: + title: protein assay + description: An analyte assay that measures the abundance of protein + meaning: OBI:2100023 + OBI:2100024: + title: calcium cation assay + description: An analyte assay that measures the abundance of calcium cation + meaning: OBI:2100024 + OBI:2100025: + title: creatine kinase assay + description: An analyte assay that measures the abundance of creatine kinase + meaning: OBI:2100025 + OBI:2100026: + title: nucleate erythrocyte count assay + description: A cytometry assay that measures the count of nucleate erythrocytes + meaning: OBI:2100026 + OBI:2100027: + title: segmented neutrophil of bone marrow count assay + description: A cytometry assay that measures the count of segmented neutrophil + of bone marrows + meaning: OBI:2100027 + OBI:2100028: + title: lactate dehydrogenase complex assay + description: An assay that measures lactate dehydrogenase complex + meaning: OBI:2100028 + OBI:2100029: + title: triglyceride assay + description: An analyte assay that measures the abundance of triglyceride + meaning: OBI:2100029 + OBI:2100030: + title: high-density lipoprotein cholesterol assay + description: An analyte assay that measures the abundance of high-density + lipoprotein cholesterol + meaning: OBI:2100030 + OBI:2100031: + title: cholesterol assay + description: An analyte assay that measures the abundance of cholesterol + meaning: OBI:2100031 + OBI:2100032: + title: low-density lipoprotein cholesterol assay + description: An analyte assay that measures the abundance of low-density lipoprotein + cholesterol + meaning: OBI:2100032 + OBI:2100033: + title: thyroid stimulating hormone assay + description: An analyte assay that measures the abundance of thyroid stimulating + hormone + meaning: OBI:2100033 + OBI:2100034: + title: prostate-specific antigen assay + description: An analyte assay that measures the abundance of prostate-specific + antigen + meaning: OBI:2100034 + OBI:2100035: + title: thyroxine assay + description: An analyte assay that measures the abundance of thyroxine + meaning: OBI:2100035 + OBI:2100036: + title: elemental oxygen assay + description: An analyte assay that measures the abundance of elemental oxygen + meaning: OBI:2100036 + OBI:2100037: + title: folic acids assay + description: An analyte assay that measures the abundance of folic acids + meaning: OBI:2100037 + OBI:2100038: + title: reticulocyte count assay + description: A cytometry assay that measures the count of reticulocytes + meaning: OBI:2100038 + OBI:2100039: + title: osmolality assay + description: An assay that measures osmolality + meaning: OBI:2100039 + OBI:2100040: + title: methemoglobin assay + description: An analyte assay that measures the abundance of methemoglobin + meaning: OBI:2100040 + OBI:2100041: + title: cytosolic creatine kinase complex, MB-type assay + description: An assay that measures cytosolic creatine kinase complex, MB-type + meaning: OBI:2100041 + OBI:2100042: + title: rac-lactic acid assay + description: An assay that measures rac-lactic acid + meaning: OBI:2100042 + OBI:2100043: + title: hydrogencarbonate assay + description: An analyte assay that measures the abundance of hydrogencarbonate + meaning: OBI:2100043 + OBI:2100044: + title: vancomycin assay + description: An analyte assay that measures the abundance of vancomycin + meaning: OBI:2100044 + OBI:2100045: + title: tobramycin assay + description: An analyte assay that measures the abundance of tobramycin + meaning: OBI:2100045 + OBI:2100046: + title: 3,3',5'-triiodothyronine assay + description: An analyte assay that measures the abundance of 3,3',5'-triiodothyronine + meaning: OBI:2100046 + OBI:2100047: + title: C-reactive protein assay + description: An analyte assay that measures the abundance of C-reactive protein + meaning: OBI:2100047 + OBI:2100048: + title: megakaryocyte count assay + description: A cytometry assay that measures the count of megakaryocytes + meaning: OBI:2100048 + OBI:2100049: + title: mesothelial cell count assay + description: A cytometry assay that measures the count of mesothelial cells + meaning: OBI:2100049 + OBI:2100050: + title: macrophage count assay + description: A cytometry assay that measures the count of macrophages + meaning: OBI:2100050 + OBI:2100051: + title: 3-hydroxybutyric acid assay + description: An analyte assay that measures the abundance of 3-hydroxybutyric + acid + meaning: OBI:2100051 + OBI:2100052: + title: panel5 venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a panel5 order + meaning: OBI:2100052 + OBI:2100053: + title: panel5 venous blood sodium assay + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a panel5 order + meaning: OBI:2100053 + OBI:2100054: + title: panel5 venous blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a panel5 order + meaning: OBI:2100054 + OBI:2100055: + title: panel5 venous blood potassium assay + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a panel5 order + meaning: OBI:2100055 + OBI:2100056: + title: automated differential venous blood basophil count assay + description: A cytometry assay that measures the count of basophils in venous + blood as part of a automated differential order + meaning: OBI:2100056 + OBI:2100057: + title: automated differential venous blood neutrophil count assay + description: A cytometry assay that measures the count of neutrophils in venous + blood as part of a automated differential order + meaning: OBI:2100057 + OBI:2100058: + title: automated differential venous blood eosinophil count assay + description: A cytometry assay that measures the count of eosinophils in venous + blood as part of a automated differential order + meaning: OBI:2100058 + OBI:2100059: + title: automated differential venous blood lymphocyte count assay + description: A cytometry assay that measures the count of lymphocytes in venous + blood as part of a automated differential order + meaning: OBI:2100059 + OBI:2100060: + title: automated differential venous blood monocyte count assay + description: A cytometry assay that measures the count of monocytes in venous + blood as part of a automated differential order + meaning: OBI:2100060 + OBI:2100061: + title: venous blood chloride assay + description: An analyte assay that measures the abundance of chloride in venous + blood + meaning: OBI:2100061 + OBI:2100062: + title: CBC with automated differential venous blood RBC count assay + description: A cytometry assay that measures the count of RBCs in venous blood + as part of a CBC with automated differential order + meaning: OBI:2100062 + OBI:2100063: + title: CBC with automated differential venous blood platelet count assay + description: A cytometry assay that measures the count of platelets in venous + blood as part of a CBC with automated differential order + meaning: OBI:2100063 + OBI:2100064: + title: CBC with automated differential venous blood WBC count assay + description: A cytometry assay that measures the count of WBCs in venous blood + as part of a CBC with automated differential order + meaning: OBI:2100064 + OBI:2100065: + title: CBC with automated differential venous blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a CBC with automated differential order + meaning: OBI:2100065 + OBI:2100066: + title: CBC with automated differential venous blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a CBC with automated differential order + meaning: OBI:2100066 + OBI:2100067: + title: venous blood phosphate assay + description: An analyte assay that measures the abundance of phosphate in + venous blood + meaning: OBI:2100067 + OBI:2100068: + title: liver injury venous blood alanine aminotransferase assay + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a liver injury order + meaning: OBI:2100068 + OBI:2100069: + title: liver injury venous blood human alkaline phosphatase assay + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a liver injury order + meaning: OBI:2100069 + OBI:2100070: + title: liver injury venous blood bilirubin assay + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a liver injury order + meaning: OBI:2100070 + OBI:2100071: + title: liver injury venous blood human aspartate aminotransferase assay + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a liver injury order + meaning: OBI:2100071 + OBI:2100072: + title: venous blood glucose assay + description: An analyte assay that measures the abundance of glucose in venous + blood + meaning: OBI:2100072 + OBI:2100073: + title: venous blood magnesium assay + description: An analyte assay that measures the abundance of magnesium in + venous blood + meaning: OBI:2100073 + OBI:2100074: + title: CBC venous blood RBC count assay + description: A cytometry assay that measures the count of RBCs in venous blood + as part of a CBC order + meaning: OBI:2100074 + OBI:2100075: + title: CBC venous blood WBC count assay + description: A cytometry assay that measures the count of WBCs in venous blood + as part of a CBC order + meaning: OBI:2100075 + OBI:2100076: + title: CBC venous blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a CBC order + meaning: OBI:2100076 + OBI:2100077: + title: CBC venous blood platelet count assay + description: A cytometry assay that measures the count of platelets in venous + blood as part of a CBC order + meaning: OBI:2100077 + OBI:2100078: + title: CBC venous blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a CBC order + meaning: OBI:2100078 + OBI:2100079: + title: corrected venous blood leukocyte count assay + description: A cytometry assay that measures the count of leukocytes in venous + blood as part of a corrected order + meaning: OBI:2100079 + OBI:2100080: + title: liver evaluation venous blood bilirubin assay + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a liver evaluation order + meaning: OBI:2100080 + OBI:2100081: + title: liver evaluation venous blood globulin assay + description: An analyte assay that measures the abundance of globulin in venous + blood as part of a liver evaluation order + meaning: OBI:2100081 + OBI:2100082: + title: liver evaluation venous blood albumin assay + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a liver evaluation order + meaning: OBI:2100082 + OBI:2100083: + title: liver evaluation venous blood human aspartate aminotransferase assay + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a liver evaluation order + meaning: OBI:2100083 + OBI:2100084: + title: liver evaluation venous blood alanine aminotransferase assay + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a liver evaluation order + meaning: OBI:2100084 + OBI:2100085: + title: liver evaluation venous blood human alkaline phosphatase assay + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a liver evaluation order + meaning: OBI:2100085 + OBI:2100086: + title: liver evaluation venous blood protein assay + description: An analyte assay that measures the abundance of protein in venous + blood as part of a liver evaluation order + meaning: OBI:2100086 + OBI:2100087: + title: basic metabolic panel venous blood chloride assay + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a basic metabolic panel order + meaning: OBI:2100087 + OBI:2100088: + title: basic metabolic panel venous blood potassium assay + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a basic metabolic panel order + meaning: OBI:2100088 + OBI:2100089: + title: basic metabolic panel venous blood sodium assay + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a basic metabolic panel order + meaning: OBI:2100089 + OBI:2100090: + title: basic metabolic panel venous blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a basic metabolic panel order + meaning: OBI:2100090 + OBI:2100091: + title: basic metabolic panel venous blood glucose assay + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a basic metabolic panel order + meaning: OBI:2100091 + OBI:2100092: + title: basic metabolic panel venous blood calcium assay + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a basic metabolic panel order + meaning: OBI:2100092 + OBI:2100093: + title: basic metabolic panel venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a basic metabolic panel order + meaning: OBI:2100093 + OBI:2100094: + title: venous blood creatine kinase assay + description: An analyte assay that measures the abundance of creatine kinase + in venous blood + meaning: OBI:2100094 + OBI:2100095: + title: venous blood calcium assay + description: An analyte assay that measures the abundance of calcium in venous + blood + meaning: OBI:2100095 + OBI:2100096: + title: venous blood ferritin assay + description: An assay that measures ferritin in venous blood + meaning: OBI:2100096 + OBI:2100097: + title: total venous blood calcium assay + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a total order + meaning: OBI:2100097 + OBI:2100098: + title: venous blood iron assay + description: An analyte assay that measures the abundance of iron in venous + blood + meaning: OBI:2100098 + OBI:2100099: + title: CBC with manual differential venous blood band neutrophil count assay + description: A cytometry assay that measures the count of band neutrophils + in venous blood as part of a CBC with manual differential order + meaning: OBI:2100099 + OBI:2100100: + title: CBC with manual differential venous blood WBC count assay + description: A cytometry assay that measures the count of WBCs in venous blood + as part of a CBC with manual differential order + meaning: OBI:2100100 + OBI:2100101: + title: CBC with manual differential venous blood eosinophil count assay + description: A cytometry assay that measures the count of eosinophils in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100101 + OBI:2100102: + title: CBC with manual differential venous blood lymphocyte count assay + description: A cytometry assay that measures the count of lymphocytes in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100102 + OBI:2100103: + title: CBC with manual differential venous blood nucleated RBC count assay + description: A cytometry assay that measures the count of nucleated RBCs in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100103 + OBI:2100104: + title: CBC with manual differential venous blood monocyte count assay + description: A cytometry assay that measures the count of monocytes in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100104 + OBI:2100105: + title: CBC with manual differential venous blood segmented neutrophil count + assay + description: A cytometry assay that measures the count of segmented neutrophils + in venous blood as part of a CBC with manual differential order + meaning: OBI:2100105 + OBI:2100106: + title: CBC with manual differential venous blood basophil count assay + description: A cytometry assay that measures the count of basophils in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100106 + OBI:2100107: + title: venous blood albumin assay + description: An analyte assay that measures the abundance of albumin in venous + blood + meaning: OBI:2100107 + OBI:2100108: + title: cardiac enzymes venous blood creatine kinase assay + description: An analyte assay that measures the abundance of creatine kinase + in venous blood as part of a cardiac enzymes order + meaning: OBI:2100108 + OBI:2100109: + title: venous blood haptoglobin assay + description: An analyte assay that measures the abundance of haptoglobin in + venous blood + meaning: OBI:2100109 + OBI:2100110: + title: venous blood lactate dehydrogenase assay + description: An assay that measures lactate dehydrogenase in venous blood + meaning: OBI:2100110 + OBI:2100111: + title: venous blood prealbunin assay + description: An analyte assay that measures the abundance of prealbunin in + venous blood + meaning: OBI:2100111 + OBI:2100112: + title: lipid panel venous blood triglyceride assay + description: An analyte assay that measures the abundance of triglyceride + in venous blood as part of a lipid panel order + meaning: OBI:2100112 + OBI:2100113: + title: lipid panel venous blood high density lipoprotein assay + description: An analyte assay that measures the abundance of high density + lipoprotein in venous blood as part of a lipid panel order + meaning: OBI:2100113 + OBI:2100114: + title: lipid panel venous blood cholesterol assay + description: An analyte assay that measures the abundance of cholesterol in + venous blood as part of a lipid panel order + meaning: OBI:2100114 + OBI:2100115: + title: lipid panel venous blood low density lipoprotein assay + description: An analyte assay that measures the abundance of low density lipoprotein + in venous blood as part of a lipid panel order + meaning: OBI:2100115 + OBI:2100116: + title: venous blood hemoglobin A1c assay + description: An assay that measures hemoglobin A1c in venous blood + meaning: OBI:2100116 + OBI:2100117: + title: venous blood uric acid assay + description: An analyte assay that measures the abundance of uric acid in + venous blood + meaning: OBI:2100117 + OBI:2100118: + title: total venous blood protein assay + description: An analyte assay that measures the abundance of protein in venous + blood as part of a total order + meaning: OBI:2100118 + OBI:2100119: + title: venous blood thyroid stimulating hormone assay + description: An analyte assay that measures the abundance of thyroid stimulating + hormone in venous blood + meaning: OBI:2100119 + OBI:2100120: + title: venous blood prostate specific antigen assay + description: An analyte assay that measures the abundance of prostate specific + antigen in venous blood + meaning: OBI:2100120 + OBI:2100121: + title: 24 hour total urine volume assay + description: An assay that measures volume in urine as part of a 24 hour total + order + meaning: OBI:2100121 + OBI:2100122: + title: T4 uptake venous blood T4 assay + description: An analyte assay that measures the abundance of T4 in venous + blood as part of a T4 uptake order + meaning: OBI:2100122 + OBI:2100123: + title: arterial blood glucose assay + description: An analyte assay that measures the abundance of glucose in arterial + blood + meaning: OBI:2100123 + OBI:2100124: + title: CBC with manual differential venous blood cell count assay + description: A cytometry assay that measures the count of cells in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100124 + OBI:2100125: + title: hemoglobin oxygen saturation arterial blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a hemoglobin oxygen saturation order + meaning: OBI:2100125 + OBI:2100126: + title: hemoglobin oxygen saturation arterial blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a hemoglobin oxygen saturation order + meaning: OBI:2100126 + OBI:2100127: + title: inpatient profile venous blood sodium assay + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a inpatient profile order + meaning: OBI:2100127 + OBI:2100128: + title: inpatient profile venous blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a inpatient profile order + meaning: OBI:2100128 + OBI:2100129: + title: inpatient profile venous blood potassium assay + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a inpatient profile order + meaning: OBI:2100129 + OBI:2100130: + title: inpatient profile venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a inpatient profile order + meaning: OBI:2100130 + OBI:2100131: + title: venous blood folic acid assay + description: An analyte assay that measures the abundance of folic acid in + venous blood + meaning: OBI:2100131 + OBI:2100132: + title: count venous blood reticulocyte count assay + description: A cytometry assay that measures the count of reticulocytes in + venous blood as part of a count order + meaning: OBI:2100132 + OBI:2100133: + title: venous blood potassium assay + description: An analyte assay that measures the abundance of potassium in + venous blood + meaning: OBI:2100133 + OBI:2100134: + title: venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood + meaning: OBI:2100134 + OBI:2100135: + title: venous blood transferrin assay + description: An analyte assay that measures the abundance of transferrin in + venous blood + meaning: OBI:2100135 + OBI:2100136: + title: venous blood sodium assay + description: An analyte assay that measures the abundance of sodium in venous + blood + meaning: OBI:2100136 + OBI:2100137: + title: random electrolytes urine sodium assay + description: An analyte assay that measures the abundance of sodium in urine + as part of a random electrolytes order + meaning: OBI:2100137 + OBI:2100138: + title: random electrolytes urine potassium assay + description: An analyte assay that measures the abundance of potassium in + urine as part of a random electrolytes order + meaning: OBI:2100138 + OBI:2100139: + title: urine creatinine assay + description: An analyte assay that measures the abundance of creatinine in + urine + meaning: OBI:2100139 + OBI:2100140: + title: urine osmolality assay + description: An assay that measures osmolality in urine + meaning: OBI:2100140 + OBI:2100141: + title: cooximitery arterial blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a cooximitery order + meaning: OBI:2100141 + OBI:2100142: + title: cooximitery arterial blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a cooximitery order + meaning: OBI:2100142 + OBI:2100143: + title: cooximitery arterial blood methemoglobin assay + description: An analyte assay that measures the abundance of methemoglobin + in arterial blood as part of a cooximitery order + meaning: OBI:2100143 + OBI:2100144: + title: electrolytes urine sodium assay + description: An analyte assay that measures the abundance of sodium in urine + as part of a electrolytes order + meaning: OBI:2100144 + OBI:2100145: + title: electrolytes urine potassium assay + description: An analyte assay that measures the abundance of potassium in + urine as part of a electrolytes order + meaning: OBI:2100145 + OBI:2100146: + title: Biosite cardiac panel arterial blood creatine kinase MB assay + description: An assay that measures creatine kinase MB in arterial blood as + part of a Biosite cardiac panel order + meaning: OBI:2100146 + OBI:2100147: + title: venous blood fibrinogen assay + description: An assay that measures fibrinogen in venous blood + meaning: OBI:2100147 + OBI:2100148: + title: comprehensive metabolic panel venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100148 + OBI:2100149: + title: comprehensive metabolic panel venous blood calcium assay + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100149 + OBI:2100150: + title: comprehensive metabolic panel venous blood potassium assay + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100150 + OBI:2100151: + title: comprehensive metabolic panel venous blood sodium assay + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100151 + OBI:2100152: + title: comprehensive metabolic panel venous blood glucose assay + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100152 + OBI:2100153: + title: comprehensive metabolic panel venous blood albumin assay + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100153 + OBI:2100154: + title: comprehensive metabolic panel venous blood human alkaline phosphatase + assay + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100154 + OBI:2100155: + title: comprehensive metabolic panel venous blood bilirubin assay + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100155 + OBI:2100156: + title: comprehensive metabolic panel venous blood chloride assay + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100156 + OBI:2100157: + title: comprehensive metabolic panel venous blood human aspartate aminotransferase + assay + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a comprehensive metabolic panel + order + meaning: OBI:2100157 + OBI:2100158: + title: comprehensive metabolic panel venous blood protein assay + description: An analyte assay that measures the abundance of protein in venous + blood as part of a comprehensive metabolic panel order + meaning: OBI:2100158 + OBI:2100159: + title: comprehensive metabolic panel venous blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100159 + OBI:2100160: + title: comprehensive metabolic panel venous blood alanine aminotransferase + assay + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a comprehensive metabolic panel order + meaning: OBI:2100160 + OBI:2100161: + title: venous blood LDH assay + description: An assay that measures LDH in venous blood + meaning: OBI:2100161 + OBI:2100162: + title: venous blood creatine kinase MB assay + description: An assay that measures creatine kinase MB in venous blood + meaning: OBI:2100162 + OBI:2100163: + title: venous blood lactic acid assay + description: An assay that measures lactic acid in venous blood + meaning: OBI:2100163 + OBI:2100164: + title: venous blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in venous blood + meaning: OBI:2100164 + OBI:2100165: + title: venous blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + venous blood + meaning: OBI:2100165 + OBI:2100166: + title: blood gas venous blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in venous + blood as part of a blood gas order + meaning: OBI:2100166 + OBI:2100167: + title: ionized venous blood ionized calcium assay + description: An analyte assay that measures the abundance of ionized calcium + in venous blood as part of a ionized order + meaning: OBI:2100167 + OBI:2100168: + title: blood gas venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a blood gas order + meaning: OBI:2100168 + OBI:2100169: + title: blood gas venous blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + venous blood as part of a blood gas order + meaning: OBI:2100169 + OBI:2100170: + title: arterial blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + arterial blood + meaning: OBI:2100170 + OBI:2100171: + title: venous blood tacrolimus assay + description: An analyte assay that measures the abundance of tacrolimus in + venous blood + meaning: OBI:2100171 + OBI:2100172: + title: random venous blood vancomycin assay + description: An analyte assay that measures the abundance of vancomycin in + venous blood as part of a random order + meaning: OBI:2100172 + OBI:2100173: + title: venous blood mycophenolic acid assay + description: An analyte assay that measures the abundance of mycophenolic + acid in venous blood + meaning: OBI:2100173 + OBI:2100174: + title: non-vented blood gas arterial blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a non-vented blood gas order + meaning: OBI:2100174 + OBI:2100175: + title: non-vented blood gas arterial blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a non-vented blood gas order + meaning: OBI:2100175 + OBI:2100176: + title: non-vented blood gas arterial blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a non-vented blood gas order + meaning: OBI:2100176 + OBI:2100177: + title: quantitative venous blood IgG assay + description: An assay that measures IgG in venous blood as part of a quantitative + order + meaning: OBI:2100177 + OBI:2100178: + title: quantitative venous blood IgM assay + description: An assay that measures IgM in venous blood as part of a quantitative + order + meaning: OBI:2100178 + OBI:2100179: + title: quantitative venous blood IgA assay + description: An assay that measures IgA in venous blood as part of a quantitative + order + meaning: OBI:2100179 + OBI:2100180: + title: arterial blood sodium assay + description: An analyte assay that measures the abundance of sodium in arterial + blood + meaning: OBI:2100180 + OBI:2100181: + title: arterial blood potassium assay + description: An analyte assay that measures the abundance of potassium in + arterial blood + meaning: OBI:2100181 + OBI:2100182: + title: ionized arterial blood calcium assay + description: An analyte assay that measures the abundance of calcium in arterial + blood as part of a ionized order + meaning: OBI:2100182 + OBI:2100183: + title: vented blood gas arterial blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a vented blood gas order + meaning: OBI:2100183 + OBI:2100184: + title: vented blood gas arterial blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a vented blood gas order + meaning: OBI:2100184 + OBI:2100185: + title: vented blood gas arterial blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a vented blood gas order + meaning: OBI:2100185 + OBI:2100186: + title: arterial blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood + meaning: OBI:2100186 + OBI:2100187: + title: arterial blood chloride assay + description: An analyte assay that measures the abundance of chloride in arterial + blood + meaning: OBI:2100187 + OBI:2100188: + title: arterial blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood + meaning: OBI:2100188 + OBI:2100189: + title: GEM premier blood gas venous blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a GEM premier blood gas order + meaning: OBI:2100189 + OBI:2100190: + title: GEM premier blood gas venous blood ionized calcium assay + description: An analyte assay that measures the abundance of ionized calcium + in venous blood as part of a GEM premier blood gas order + meaning: OBI:2100190 + OBI:2100191: + title: GEM premier blood gas venous blood potassium assay + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a GEM premier blood gas order + meaning: OBI:2100191 + OBI:2100192: + title: GEM premier blood gas venous blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in venous + blood as part of a GEM premier blood gas order + meaning: OBI:2100192 + OBI:2100193: + title: GEM premier blood gas venous blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a GEM premier blood gas order + meaning: OBI:2100193 + OBI:2100194: + title: GEM premier blood gas venous blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + venous blood as part of a GEM premier blood gas order + meaning: OBI:2100194 + OBI:2100195: + title: GEM premier blood gas venous blood glucose assay + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a GEM premier blood gas order + meaning: OBI:2100195 + OBI:2100196: + title: GEM premier blood gas venous blood sodium assay + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a GEM premier blood gas order + meaning: OBI:2100196 + OBI:2100197: + title: GEM premier blood gas venous blood lactic acid assay + description: An assay that measures lactic acid in venous blood as part of + a GEM premier blood gas order + meaning: OBI:2100197 + OBI:2100198: + title: GEM premier blood gas venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a GEM premier blood gas order + meaning: OBI:2100198 + OBI:2100199: + title: trough venous blood tobramycin assay + description: An analyte assay that measures the abundance of tobramycin in + venous blood as part of a trough order + meaning: OBI:2100199 + OBI:2100200: + title: random venous blood tobramycin assay + description: An analyte assay that measures the abundance of tobramycin in + venous blood as part of a random order + meaning: OBI:2100200 + OBI:2100201: + title: CBC with manual differential venous blood metamyelocyte count assay + description: A cytometry assay that measures the count of metamyelocytes in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100201 + OBI:2100202: + title: arterial blood lactic acid assay + description: An assay that measures lactic acid in arterial blood + meaning: OBI:2100202 + OBI:2100203: + title: venous blood 25-hydroxyvitamin D2 assay + description: An analyte assay that measures the abundance of 25-hydroxyvitamin + D2 in venous blood + meaning: OBI:2100203 + OBI:2100204: + title: venous blood digoxin assay + description: An analyte assay that measures the abundance of digoxin in venous + blood + meaning: OBI:2100204 + OBI:2100205: + title: urine protein assay + description: An analyte assay that measures the abundance of protein in urine + meaning: OBI:2100205 + OBI:2100206: + title: venous blood tobramycin assay + description: An analyte assay that measures the abundance of tobramycin in + venous blood + meaning: OBI:2100206 + OBI:2100207: + title: CBC with manual differential venous blood myelocyte count assay + description: A cytometry assay that measures the count of myelocytes in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100207 + OBI:2100208: + title: SPEP protein electrophoresis venous blood beta-globin assay + description: An analyte assay that measures the abundance of beta-globin in + venous blood as part of a SPEP protein electrophoresis order + meaning: OBI:2100208 + OBI:2100209: + title: SPEP protein electrophoresis venous blood albumin assay + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a SPEP protein electrophoresis order + meaning: OBI:2100209 + OBI:2100210: + title: SPEP protein electrophoresis venous blood protein assay + description: An analyte assay that measures the abundance of protein in venous + blood as part of a SPEP protein electrophoresis order + meaning: OBI:2100210 + OBI:2100211: + title: trough venous blood vancomycin assay + description: An analyte assay that measures the abundance of vancomycin in + venous blood as part of a trough order + meaning: OBI:2100211 + OBI:2100212: + title: hepatic panel venous blood protein assay + description: An analyte assay that measures the abundance of protein in venous + blood as part of a hepatic panel order + meaning: OBI:2100212 + OBI:2100213: + title: hepatic panel venous blood bilirubin assay + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a hepatic panel order + meaning: OBI:2100213 + OBI:2100214: + title: hepatic panel venous blood alanine aminotransferase assay + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a hepatic panel order + meaning: OBI:2100214 + OBI:2100215: + title: hepatic panel venous blood human aspartate aminotransferase assay + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a hepatic panel order + meaning: OBI:2100215 + OBI:2100216: + title: hepatic panel venous blood albumin assay + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a hepatic panel order + meaning: OBI:2100216 + OBI:2100217: + title: hepatic panel venous blood human alkaline phosphatase assay + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a hepatic panel order + meaning: OBI:2100217 + OBI:2100218: + title: estimated venous blood glomerular filtration assay + description: An assay that measures glomerular filtration in venous blood + as part of a estimated order + meaning: OBI:2100218 + OBI:2100219: + title: DT60 venous blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a DT60 order + meaning: OBI:2100219 + OBI:2100220: + title: fasting venous blood glucose assay + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a fasting order + meaning: OBI:2100220 + OBI:2100221: + title: random venous blood amikacin assay + description: An analyte assay that measures the abundance of amikacin in venous + blood as part of a random order + meaning: OBI:2100221 + OBI:2100222: + title: venous blood ammonia assay + description: An analyte assay that measures the abundance of ammonia in venous + blood + meaning: OBI:2100222 + OBI:2100223: + title: venous blood GGT assay + description: An analyte assay that measures the abundance of GGT in venous + blood + meaning: OBI:2100223 + OBI:2100224: + title: chem11 venous blood phosphate assay + description: An analyte assay that measures the abundance of phosphate in + venous blood as part of a chem11 order + meaning: OBI:2100224 + OBI:2100225: + title: chem11 venous blood potassium assay + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a chem11 order + meaning: OBI:2100225 + OBI:2100226: + title: chem11 venous blood calcium assay + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a chem11 order + meaning: OBI:2100226 + OBI:2100227: + title: chem11 venous blood glucose assay + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a chem11 order + meaning: OBI:2100227 + OBI:2100228: + title: chem11 venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a chem11 order + meaning: OBI:2100228 + OBI:2100229: + title: chem11 venous blood albumin assay + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a chem11 order + meaning: OBI:2100229 + OBI:2100230: + title: chem11 venous blood sodium assay + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a chem11 order + meaning: OBI:2100230 + OBI:2100231: + title: chem11 venous blood magnesium assay + description: An analyte assay that measures the abundance of magnesium in + venous blood as part of a chem11 order + meaning: OBI:2100231 + OBI:2100232: + title: chem11 venous blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a chem11 order + meaning: OBI:2100232 + OBI:2100233: + title: chem11 venous blood chloride assay + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a chem11 order + meaning: OBI:2100233 + OBI:2100234: + title: total venous blood IgE assay + description: An assay that measures IgE in venous blood as part of a total + order + meaning: OBI:2100234 + OBI:2100235: + title: chem16 venous blood human aspartate aminotransferase assay + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a chem16 order + meaning: OBI:2100235 + OBI:2100236: + title: chem16 venous blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + venous blood as part of a chem16 order + meaning: OBI:2100236 + OBI:2100237: + title: chem16 venous blood magnesium assay + description: An analyte assay that measures the abundance of magnesium in + venous blood as part of a chem16 order + meaning: OBI:2100237 + OBI:2100238: + title: chem16 venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a chem16 order + meaning: OBI:2100238 + OBI:2100239: + title: chem16 venous blood glucose assay + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a chem16 order + meaning: OBI:2100239 + OBI:2100240: + title: chem16 venous blood calcium assay + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a chem16 order + meaning: OBI:2100240 + OBI:2100241: + title: chem16 venous blood triglyceride assay + description: An analyte assay that measures the abundance of triglyceride + in venous blood as part of a chem16 order + meaning: OBI:2100241 + OBI:2100242: + title: chem16 venous blood sodium assay + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a chem16 order + meaning: OBI:2100242 + OBI:2100243: + title: chem16 venous blood phosphate assay + description: An analyte assay that measures the abundance of phosphate in + venous blood as part of a chem16 order + meaning: OBI:2100243 + OBI:2100244: + title: chem16 venous blood human alkaline phosphatase assay + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a chem16 order + meaning: OBI:2100244 + OBI:2100245: + title: chem16 venous blood albumin assay + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a chem16 order + meaning: OBI:2100245 + OBI:2100246: + title: chem16 venous blood bilirubin assay + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a chem16 order + meaning: OBI:2100246 + OBI:2100247: + title: chem16 venous blood chloride assay + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a chem16 order + meaning: OBI:2100247 + OBI:2100248: + title: chem16 venous blood alanine aminotransferase assay + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a chem16 order + meaning: OBI:2100248 + OBI:2100249: + title: chem16 venous blood potassium assay + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a chem16 order + meaning: OBI:2100249 + OBI:2100250: + title: POC chem8 arterial blood glucose assay + description: An analyte assay that measures the abundance of glucose in arterial + blood as part of a POC chem8 order + meaning: OBI:2100250 + OBI:2100251: + title: POC chem8 arterial blood ionized calcium assay + description: An analyte assay that measures the abundance of ionized calcium + in arterial blood as part of a POC chem8 order + meaning: OBI:2100251 + OBI:2100252: + title: POC chem8 arterial blood potassium assay + description: An analyte assay that measures the abundance of potassium in + arterial blood as part of a POC chem8 order + meaning: OBI:2100252 + OBI:2100253: + title: POC chem8 arterial blood sodium assay + description: An analyte assay that measures the abundance of sodium in arterial + blood as part of a POC chem8 order + meaning: OBI:2100253 + OBI:2100254: + title: POC chem8 arterial blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + arterial blood as part of a POC chem8 order + meaning: OBI:2100254 + OBI:2100255: + title: POC chem8 arterial blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood as part of a POC chem8 order + meaning: OBI:2100255 + OBI:2100256: + title: POC chem8 arterial blood chloride assay + description: An analyte assay that measures the abundance of chloride in arterial + blood as part of a POC chem8 order + meaning: OBI:2100256 + OBI:2100257: + title: peak venous blood tobramycin assay + description: An analyte assay that measures the abundance of tobramycin in + venous blood as part of a peak order + meaning: OBI:2100257 + OBI:2100258: + title: 24 hour urine creatinine assay + description: An analyte assay that measures the abundance of creatinine in + urine as part of a 24 hour order + meaning: OBI:2100258 + OBI:2100259: + title: intact venous blood PTH assay + description: An analyte assay that measures the abundance of PTH in venous + blood as part of a intact order + meaning: OBI:2100259 + OBI:2100260: + title: total venous blood PSA assay + description: An analyte assay that measures the abundance of PSA in venous + blood as part of a total order + meaning: OBI:2100260 + OBI:2100261: + title: total venous blood T3 assay + description: An analyte assay that measures the abundance of T3 in venous + blood as part of a total order + meaning: OBI:2100261 + OBI:2100262: + title: 24 hour urine protein assay + description: An analyte assay that measures the abundance of protein in urine + as part of a 24 hour order + meaning: OBI:2100262 + OBI:2100263: + title: total venous blood cholesterol assay + description: An analyte assay that measures the abundance of cholesterol in + venous blood as part of a total order + meaning: OBI:2100263 + OBI:2100264: + title: venous blood triglyceride assay + description: An analyte assay that measures the abundance of triglyceride + in venous blood + meaning: OBI:2100264 + OBI:2100265: + title: tube 4 count cerebrospinal fluid cell count assay + description: A cytometry assay that measures the count of cells in cerebrospinal + fluid as part of a tube 4 count order + meaning: OBI:2100265 + OBI:2100266: + title: cerebrospinal fluid protein assay + description: An analyte assay that measures the abundance of protein in cerebrospinal + fluid + meaning: OBI:2100266 + OBI:2100267: + title: cerebrospinal fluid glucose assay + description: An analyte assay that measures the abundance of glucose in cerebrospinal + fluid + meaning: OBI:2100267 + OBI:2100268: + title: tube 1 count cerebrospinal fluid cell count assay + description: A cytometry assay that measures the count of cells in cerebrospinal + fluid as part of a tube 1 count order + meaning: OBI:2100268 + OBI:2100269: + title: venous blood dehydroepiandrosterone assay + description: An analyte assay that measures the abundance of dehydroepiandrosterone + in venous blood + meaning: OBI:2100269 + OBI:2100270: + title: venous blood cortisol assay + description: An analyte assay that measures the abundance of cortisol in venous + blood + meaning: OBI:2100270 + OBI:2100271: + title: ABL90 panel arterial blood sodium assay + description: An analyte assay that measures the abundance of sodium in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100271 + OBI:2100272: + title: ABL90 panel arterial blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100272 + OBI:2100273: + title: ABL90 panel arterial blood glucose assay + description: An analyte assay that measures the abundance of glucose in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100273 + OBI:2100274: + title: ABL90 panel arterial blood lactic acid assay + description: An assay that measures lactic acid in arterial blood as part + of a ABL90 panel order + meaning: OBI:2100274 + OBI:2100275: + title: ABL90 panel arterial blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a ABL90 panel order + meaning: OBI:2100275 + OBI:2100276: + title: ABL90 panel arterial blood chloride assay + description: An analyte assay that measures the abundance of chloride in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100276 + OBI:2100277: + title: ABL90 panel arterial blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a ABL90 panel order + meaning: OBI:2100277 + OBI:2100278: + title: ABL90 panel arterial blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood as part of a ABL90 panel order + meaning: OBI:2100278 + OBI:2100279: + title: ABL90 panel arterial blood calcium assay + description: An analyte assay that measures the abundance of calcium in arterial + blood as part of a ABL90 panel order + meaning: OBI:2100279 + OBI:2100280: + title: ABL90 panel arterial blood temperature assay + description: An assay that measures temperature in arterial blood as part + of a ABL90 panel order + meaning: OBI:2100280 + OBI:2100281: + title: ABL90 panel arterial blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a ABL90 panel order + meaning: OBI:2100281 + OBI:2100282: + title: ABL90 panel arterial blood potassium assay + description: An analyte assay that measures the abundance of potassium in + arterial blood as part of a ABL90 panel order + meaning: OBI:2100282 + OBI:2100283: + title: CBC with manual differential venous blood promyelocyte count assay + description: A cytometry assay that measures the count of promyelocytes in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100283 + OBI:2100284: + title: ABL90 panel venous blood glucose assay + description: An analyte assay that measures the abundance of glucose in venous + blood as part of a ABL90 panel order + meaning: OBI:2100284 + OBI:2100285: + title: ABL90 panel venous blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a ABL90 panel order + meaning: OBI:2100285 + OBI:2100286: + title: ABL90 panel venous blood ionized calcium assay + description: An analyte assay that measures the abundance of ionized calcium + in venous blood as part of a ABL90 panel order + meaning: OBI:2100286 + OBI:2100287: + title: ABL90 panel venous blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in venous blood as part of a ABL90 panel order + meaning: OBI:2100287 + OBI:2100288: + title: ABL90 panel venous blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a ABL90 panel order + meaning: OBI:2100288 + OBI:2100289: + title: ABL90 panel venous blood sodium assay + description: An analyte assay that measures the abundance of sodium in venous + blood as part of a ABL90 panel order + meaning: OBI:2100289 + OBI:2100290: + title: ABL90 panel venous blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in venous + blood as part of a ABL90 panel order + meaning: OBI:2100290 + OBI:2100291: + title: ABL90 panel venous blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + venous blood as part of a ABL90 panel order + meaning: OBI:2100291 + OBI:2100292: + title: ABL90 panel venous blood lactic acid assay + description: An assay that measures lactic acid in venous blood as part of + a ABL90 panel order + meaning: OBI:2100292 + OBI:2100293: + title: ABL90 panel venous blood chloride assay + description: An analyte assay that measures the abundance of chloride in venous + blood as part of a ABL90 panel order + meaning: OBI:2100293 + OBI:2100294: + title: venous blood T4 assay + description: An analyte assay that measures the abundance of T4 in venous + blood + meaning: OBI:2100294 + OBI:2100295: + title: free venous blood T4 assay + description: An analyte assay that measures the abundance of T4 in venous + blood as part of a free order + meaning: OBI:2100295 + OBI:2100296: + title: ABL90 panel venous blood potassium assay + description: An analyte assay that measures the abundance of potassium in + venous blood as part of a ABL90 panel order + meaning: OBI:2100296 + OBI:2100297: + title: urine sodium assay + description: An analyte assay that measures the abundance of sodium in urine + meaning: OBI:2100297 + OBI:2100298: + title: bone profile venous blood albumin assay + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a bone profile order + meaning: OBI:2100298 + OBI:2100299: + title: bone profile venous blood calcium assay + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a bone profile order + meaning: OBI:2100299 + OBI:2100300: + title: bone profile venous blood human alkaline phosphatase assay + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a bone profile order + meaning: OBI:2100300 + OBI:2100301: + title: bone profile venous blood protein assay + description: An analyte assay that measures the abundance of protein in venous + blood as part of a bone profile order + meaning: OBI:2100301 + OBI:2100302: + title: bone profile venous blood phosphate assay + description: An analyte assay that measures the abundance of phosphate in + venous blood as part of a bone profile order + meaning: OBI:2100302 + OBI:2100303: + title: ABG/electrolytes arterial blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a ABG/electrolytes order + meaning: OBI:2100303 + OBI:2100304: + title: ABG/electrolytes arterial blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a ABG/electrolytes order + meaning: OBI:2100304 + OBI:2100305: + title: ABG/electrolytes arterial blood ionized calcium assay + description: An analyte assay that measures the abundance of ionized calcium + in arterial blood as part of a ABG/electrolytes order + meaning: OBI:2100305 + OBI:2100306: + title: CBC with automated differential venous blood nucleated RBC count assay + description: A cytometry assay that measures the count of nucleated RBCs in + venous blood as part of a CBC with automated differential order + meaning: OBI:2100306 + OBI:2100307: + title: ABL90 panel venous blood methemoglobin assay + description: An analyte assay that measures the abundance of methemoglobin + in venous blood as part of a ABL90 panel order + meaning: OBI:2100307 + OBI:2100308: + title: ABL90 panel arterial blood methemoglobin assay + description: An analyte assay that measures the abundance of methemoglobin + in arterial blood as part of a ABL90 panel order + meaning: OBI:2100308 + OBI:2100309: + title: venous blood valproic acid assay + description: An analyte assay that measures the abundance of valproic acid + in venous blood + meaning: OBI:2100309 + OBI:2100310: + title: high sensitivity cardiac/neonatal venous blood c-reactive protein assay + description: An analyte assay that measures the abundance of c-reactive protein + in venous blood as part of a high sensitivity cardiac/neonatal order + meaning: OBI:2100310 + OBI:2100311: + title: POC arterial blood creatinine assay + description: An analyte assay that measures the abundance of creatinine in + arterial blood as part of a POC order + meaning: OBI:2100311 + OBI:2100312: + title: GEM4000 ANLCOOX arterial blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100312 + OBI:2100313: + title: GEM4000 ANLCOOX arterial blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100313 + OBI:2100314: + title: GEM4000 ANLCOOX arterial blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100314 + OBI:2100315: + title: GEM4000 ANLCOOX arterial blood temperature assay + description: An assay that measures temperature in arterial blood as part + of a GEM4000 ANLCOOX order + meaning: OBI:2100315 + OBI:2100316: + title: GEM4000 ANLCOOX arterial blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100316 + OBI:2100317: + title: GEM4000 ANLCOOX arterial blood potassium assay + description: An analyte assay that measures the abundance of potassium in + arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100317 + OBI:2100318: + title: GEM4000 ANLCOOX arterial blood glucose assay + description: An analyte assay that measures the abundance of glucose in arterial + blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100318 + OBI:2100319: + title: GEM4000 ANLCOOX arterial blood ionized calcium assay + description: An analyte assay that measures the abundance of ionized calcium + in arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100319 + OBI:2100320: + title: GEM4000 ANLCOOX arterial blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100320 + OBI:2100321: + title: GEM4000 ANLCOOX arterial blood sodium assay + description: An analyte assay that measures the abundance of sodium in arterial + blood as part of a GEM4000 ANLCOOX order + meaning: OBI:2100321 + OBI:2100322: + title: ionized venous blood calcium assay + description: An analyte assay that measures the abundance of calcium in venous + blood as part of a ionized order + meaning: OBI:2100322 + OBI:2100323: + title: venous blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + venous blood + meaning: OBI:2100323 + OBI:2100324: + title: CBC with manual differential venous blood megakaryocyte count assay + description: A cytometry assay that measures the count of megakaryocytes in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100324 + OBI:2100325: + title: non-cardiac venous blood c-reactive protein assay + description: An analyte assay that measures the abundance of c-reactive protein + in venous blood as part of a non-cardiac order + meaning: OBI:2100325 + OBI:2100326: + title: intraoperative venous blood PTH assay + description: An analyte assay that measures the abundance of PTH in venous + blood as part of a intraoperative order + meaning: OBI:2100326 + OBI:2100327: + title: venous blood parathyroid hormone assay + description: An analyte assay that measures the abundance of parathyroid hormone + in venous blood + meaning: OBI:2100327 + OBI:2100328: + title: total bodily fluid protein assay + description: An analyte assay that measures the abundance of protein in bodily + fluid as part of a total order + meaning: OBI:2100328 + OBI:2100329: + title: bodily fluid glucose assay + description: An analyte assay that measures the abundance of glucose in bodily + fluid + meaning: OBI:2100329 + OBI:2100330: + title: count bodily fluid cell count assay + description: A cytometry assay that measures the count of cells in bodily + fluid as part of a count order + meaning: OBI:2100330 + OBI:2100331: + title: manual differential bodily fluid segmented neutrophil count assay + description: A cytometry assay that measures the count of segmented neutrophils + in bodily fluid as part of a manual differential order + meaning: OBI:2100331 + OBI:2100332: + title: manual differential bodily fluid mesothelial cell count assay + description: A cytometry assay that measures the count of mesothelial cells + in bodily fluid as part of a manual differential order + meaning: OBI:2100332 + OBI:2100333: + title: manual differential bodily fluid monocyte count assay + description: A cytometry assay that measures the count of monocytes in bodily + fluid as part of a manual differential order + meaning: OBI:2100333 + OBI:2100334: + title: manual differential bodily fluid lymphocyte count assay + description: A cytometry assay that measures the count of lymphocytes in bodily + fluid as part of a manual differential order + meaning: OBI:2100334 + OBI:2100335: + title: manual differential bodily fluid macrophage count assay + description: A cytometry assay that measures the count of macrophages in bodily + fluid as part of a manual differential order + meaning: OBI:2100335 + OBI:2100336: + title: manual differential bodily fluid basophil count assay + description: A cytometry assay that measures the count of basophils in bodily + fluid as part of a manual differential order + meaning: OBI:2100336 + OBI:2100337: + title: manual differential bodily fluid eosinophil count assay + description: A cytometry assay that measures the count of eosinophils in bodily + fluid as part of a manual differential order + meaning: OBI:2100337 + OBI:2100338: + title: liver function venous blood bilirubin assay + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a liver function order + meaning: OBI:2100338 + OBI:2100339: + title: liver function venous blood alanine aminotransferase assay + description: An analyte assay that measures the abundance of alanine aminotransferase + in venous blood as part of a liver function order + meaning: OBI:2100339 + OBI:2100340: + title: liver function venous blood human aspartate aminotransferase assay + description: An analyte assay that measures the abundance of human aspartate + aminotransferase in venous blood as part of a liver function order + meaning: OBI:2100340 + OBI:2100341: + title: liver function venous blood albumin assay + description: An analyte assay that measures the abundance of albumin in venous + blood as part of a liver function order + meaning: OBI:2100341 + OBI:2100342: + title: liver function venous blood protein assay + description: An analyte assay that measures the abundance of protein in venous + blood as part of a liver function order + meaning: OBI:2100342 + OBI:2100343: + title: liver function venous blood human alkaline phosphatase assay + description: An analyte assay that measures the abundance of human alkaline + phosphatase in venous blood as part of a liver function order + meaning: OBI:2100343 + OBI:2100344: + title: vitamin B12 and Folate venous blood folic acid assay + description: An analyte assay that measures the abundance of folic acid in + venous blood as part of a vitamin B12 and Folate order + meaning: OBI:2100344 + OBI:2100345: + title: bodily fluid cell count assay + description: A cytometry assay that measures the count of cells in bodily + fluid + meaning: OBI:2100345 + OBI:2100346: + title: venous blood reticulocyte count assay + description: A cytometry assay that measures the count of reticulocytes in + venous blood + meaning: OBI:2100346 + OBI:2100347: + title: bodily fluid cholesterol assay + description: An analyte assay that measures the abundance of cholesterol in + bodily fluid + meaning: OBI:2100347 + OBI:2100348: + title: TSH reflex Free T4 venous blood thyroid stimulating hormone assay + description: An analyte assay that measures the abundance of thyroid stimulating + hormone in venous blood as part of a TSH reflex Free T4 order + meaning: OBI:2100348 + OBI:2100349: + title: direct venous blood bilirubin assay + description: An analyte assay that measures the abundance of bilirubin in + venous blood as part of a direct order + meaning: OBI:2100349 + OBI:2100350: + title: free venous blood T3 assay + description: An analyte assay that measures the abundance of T3 in venous + blood as part of a free order + meaning: OBI:2100350 + OBI:2100351: + title: bodily fluid albumin assay + description: An analyte assay that measures the abundance of albumin in bodily + fluid + meaning: OBI:2100351 + OBI:2100352: + title: bodily fluid triglyceride assay + description: An analyte assay that measures the abundance of triglyceride + in bodily fluid + meaning: OBI:2100352 + OBI:2100353: + title: hemoglobin and hematocrit venous blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in venous blood as part of a hemoglobin and hematocrit order + meaning: OBI:2100353 + OBI:2100354: + title: hemoglobin and hematocrit venous blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + venous blood as part of a hemoglobin and hematocrit order + meaning: OBI:2100354 + OBI:2100355: + title: venous blood ionized calcium assay + description: An analyte assay that measures the abundance of ionized calcium + in venous blood + meaning: OBI:2100355 + OBI:2100356: + title: venous blood temperature assay + description: An assay that measures temperature in venous blood + meaning: OBI:2100356 + OBI:2100357: + title: venous blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + venous blood + meaning: OBI:2100357 + OBI:2100358: + title: venous blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in venous + blood + meaning: OBI:2100358 + OBI:2100359: + title: venous blood osmolality assay + description: An assay that measures osmolality in venous blood + meaning: OBI:2100359 + OBI:2100360: + title: liver fibrosis (chronic viral hepatitis) venous blood platelet count + assay + description: A cytometry assay that measures the count of platelets in venous + blood as part of a liver fibrosis (chronic viral hepatitis) order + meaning: OBI:2100360 + OBI:2100361: + title: venous blood T3 assay + description: An analyte assay that measures the abundance of T3 in venous + blood + meaning: OBI:2100361 + OBI:2100362: + title: CBC with manual differential venous blood neutrophil count assay + description: A cytometry assay that measures the count of neutrophils in venous + blood as part of a CBC with manual differential order + meaning: OBI:2100362 + OBI:2100363: + title: creatinine clearance urine creatinine assay + description: An analyte assay that measures the abundance of creatinine in + urine as part of a creatinine clearance order + meaning: OBI:2100363 + OBI:2100364: + title: venous blood beta hydroxybutryic acid assay + description: An analyte assay that measures the abundance of beta hydroxybutryic + acid in venous blood + meaning: OBI:2100364 + OBI:2100365: + title: venous blood megakaryocyte count assay + description: A cytometry assay that measures the count of megakaryocytes in + venous blood + meaning: OBI:2100365 + OBI:2100366: + title: venous blood nucleated RBC count assay + description: A cytometry assay that measures the count of nucleated RBCs in + venous blood + meaning: OBI:2100366 + OBI:2100367: + title: venous blood WBC count assay + description: A cytometry assay that measures the count of WBCs in venous blood + meaning: OBI:2100367 + OBI:2100368: + title: automated count venous blood reticulocyte count assay + description: A cytometry assay that measures the count of reticulocytes in + venous blood as part of a automated count order + meaning: OBI:2100368 + OBI:2100369: + title: total venous blood homocysteine assay + description: An analyte assay that measures the abundance of homocysteine + in venous blood as part of a total order + meaning: OBI:2100369 + OBI:2100370: + title: venous blood Ceruloplasmin assay + description: An analyte assay that measures the abundance of Ceruloplasmin + in venous blood + meaning: OBI:2100370 + OBI:2100371: + title: GEM4 arterial blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a GEM4 order + meaning: OBI:2100371 + OBI:2100372: + title: GEM4 arterial blood lactic acid assay + description: An assay that measures lactic acid in arterial blood as part + of a GEM4 order + meaning: OBI:2100372 + OBI:2100373: + title: GEM4 arterial blood hemoglobin assay + description: An analyte assay that measures the abundance of hemoglobin in + arterial blood as part of a GEM4 order + meaning: OBI:2100373 + OBI:2100374: + title: GEM4 arterial blood sodium assay + description: An analyte assay that measures the abundance of sodium in arterial + blood as part of a GEM4 order + meaning: OBI:2100374 + OBI:2100375: + title: GEM4 arterial blood potassium assay + description: An analyte assay that measures the abundance of potassium in + arterial blood as part of a GEM4 order + meaning: OBI:2100375 + OBI:2100376: + title: GEM4 arterial blood temperature assay + description: An assay that measures temperature in arterial blood as part + of a GEM4 order + meaning: OBI:2100376 + OBI:2100377: + title: GEM4 arterial blood glucose assay + description: An analyte assay that measures the abundance of glucose in arterial + blood as part of a GEM4 order + meaning: OBI:2100377 + OBI:2100378: + title: GEM4 arterial blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a GEM4 order + meaning: OBI:2100378 + OBI:2100379: + title: GEM4 arterial blood hematocrit assay + description: A cytometry assay that measures the proportion of red blood cells + in arterial blood as part of a GEM4 order + meaning: OBI:2100379 + OBI:2100380: + title: GEM4 arterial blood ionized calcium assay + description: An analyte assay that measures the abundance of ionized calcium + in arterial blood as part of a GEM4 order + meaning: OBI:2100380 + OBI:2100381: + title: GEM4 arterial blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a GEM4 order + meaning: OBI:2100381 + OBI:2100382: + title: liver fibrosis (NAFLD) venous blood platelet count assay + description: A cytometry assay that measures the count of platelets in venous + blood as part of a liver fibrosis (NAFLD) order + meaning: OBI:2100382 + OBI:2100383: + title: venous blood beta hydroxybutric acid assay + description: An analyte assay that measures the abundance of beta hydroxybutric + acid in venous blood + meaning: OBI:2100383 + OBI:2100384: + title: CBC with manual differential venous blood plasma cell count assay + description: A cytometry assay that measures the count of plasma cells in + venous blood as part of a CBC with manual differential order + meaning: OBI:2100384 + OBI:2100385: + title: venous blood erythropoietin assay + description: An analyte assay that measures the abundance of erythropoietin + in venous blood + meaning: OBI:2100385 + OBI:2100386: + title: blood gas arterial blood oxygen assay + description: An analyte assay that measures the abundance of oxygen in arterial + blood as part of a blood gas order + meaning: OBI:2100386 + OBI:2100387: + title: blood gas arterial blood bicarbonate assay + description: An analyte assay that measures the abundance of bicarbonate in + arterial blood as part of a blood gas order + meaning: OBI:2100387 + OBI:2100388: + title: blood gas arterial blood carbon dioxide assay + description: An analyte assay that measures the abundance of carbon dioxide + in arterial blood as part of a blood gas order + meaning: OBI:2100388 + OBI:2100389: + title: free/total venous blood PSA assay + description: An analyte assay that measures the abundance of PSA in venous + blood as part of a free/total order + meaning: OBI:2100389 + OBI:2100390: + title: cerebrospinal fluid lymphocyte count assay + description: A cytometry assay that measures the count of lymphocytes in cerebrospinal + fluid + meaning: OBI:2100390 + OBI:2100391: + title: cerebrospinal fluid segmented neutrophil count assay + description: A cytometry assay that measures the count of segmented neutrophils + in cerebrospinal fluid + meaning: OBI:2100391 + OBI:2100392: + title: cerebrospinal fluid mesothelial cell count assay + description: A cytometry assay that measures the count of mesothelial cells + in cerebrospinal fluid + meaning: OBI:2100392 + OBI:2100393: + title: cerebrospinal fluid macrophage count assay + description: A cytometry assay that measures the count of macrophages in cerebrospinal + fluid + meaning: OBI:2100393 + OBI:2100394: + title: cerebrospinal fluid basophil count assay + description: A cytometry assay that measures the count of basophils in cerebrospinal + fluid + meaning: OBI:2100394 + OBI:2100395: + title: cerebrospinal fluid monocyte count assay + description: A cytometry assay that measures the count of monocytes in cerebrospinal + fluid + meaning: OBI:2100395 + OBI:2100396: + title: cerebrospinal fluid eosinophil count assay + description: A cytometry assay that measures the count of eosinophils in cerebrospinal + fluid + meaning: OBI:2100396 + OBI:2100397: + title: venous blood beta-2-microglobulin assay + description: An analyte assay that measures the abundance of beta-2-microglobulin + in venous blood + meaning: OBI:2100397 + OBI:2100398: + title: lipid panel reflex direct venous blood low density lipoprotein assay + description: An analyte assay that measures the abundance of low density lipoprotein + in venous blood as part of a Lipid panel reflex direct order + meaning: OBI:2100398 + OBI:2100399: + title: lipid panel reflex direct venous blood triglyceride assay + description: An analyte assay that measures the abundance of triglyceride + in venous blood as part of a Lipid panel reflex direct order + meaning: OBI:2100399 + OBI:2100400: + title: lipid panel reflex direct venous blood cholesterol assay + description: An analyte assay that measures the abundance of cholesterol in + venous blood as part of a Lipid panel reflex direct order + meaning: OBI:2100400 + OBI:2100401: + title: lipid panel reflex direct venous blood high density lipoprotein assay + description: An analyte assay that measures the abundance of high density + lipoprotein in venous blood as part of a Lipid panel reflex direct order + meaning: OBI:2100401 + OBI:2100402: + title: pooled clone sequencing assay + description: A DNA sequencing assay in which the DNA input is derived from + pooled clones (for example BACs and Fosmids) is sequenced. + meaning: OBI:2100402 + OBI:9999994: + title: chromium release assay + description: An in vitro cell killing assay in which radioactive chromium + is absorbed by cells and released into supernatant when the cells die. The + amount of radioactivity measured in the supernatant is a proxy for the number + of cells that have died. + meaning: OBI:9999994 diff --git a/src/common_access_model/schema/enums/EnumPresentAbsent.yaml b/src/common_access_model/schema/enums/EnumPresentAbsent.yaml index e1c0fe1..1efa682 100644 --- a/src/common_access_model/schema/enums/EnumPresentAbsent.yaml +++ b/src/common_access_model/schema/enums/EnumPresentAbsent.yaml @@ -3,9 +3,9 @@ id: https://includedcc.org/common-access-model/EnumPresentAbsent name: EnumPresentAbsent enums: EnumPresentAbsent: - description: Options for describing presence or absence. Derived from - SNOMED CT Known codes. The "Known" codes and "Not suspected" are the - broadest terms and suitable for general use. + description: Options for describing presence or absence. Derived from SNOMED CT + Known codes. The "Known" codes and "Not suspected" are the broadest terms and + suitable for general use. reachable_from: source_ontology: bioregistry:snomedct source_nodes: @@ -14,3 +14,37 @@ enums: is_direct: false relationship_types: - rdfs:subClassOf + permissible_values: + snomedct:410515003: + title: Known present + meaning: snomedct:410515003 + snomedct:410516002: + title: Known absent + meaning: snomedct:410516002 + snomedct:410590009: + title: Known possible + meaning: snomedct:410590009 + snomedct:410591008: + title: Definitely present + meaning: snomedct:410591008 + snomedct:410592001: + title: Probably present + meaning: snomedct:410592001 + snomedct:410593006: + title: Probably not present + meaning: snomedct:410593006 + snomedct:410594000: + title: Definitely not present + meaning: snomedct:410594000 + snomedct:410605003: + title: Confirmed present + meaning: snomedct:410605003 + snomedct:415684004: + title: Suspected + meaning: snomedct:415684004 + snomedct:428263003: + title: Not suspected + meaning: snomedct:428263003 + snomedct:723511001: + title: Refuted + meaning: snomedct:723511001