From 9a349ffa0068c1bc8b274d52c230899e462dcb13 Mon Sep 17 00:00:00 2001 From: Lukas Wallrich Date: Tue, 3 Nov 2026 22:51:16 +0000 Subject: [PATCH 1/7] Make the clusters parser safe to re-run and drop Cluster 10's editor's note The Google Doc's formatting had drifted: the parser found no Cluster 11 sub-clusters and read two citations as headings. It also published an editor's note at the start of Cluster 10's description. Fixes #978 Co-Authored-By: Claude Opus 5.5 --- content/clusters/cluster-10/index.md | 6 +-- data/clusters_v4.json | 2 +- scripts/parse_clusters_to_sheet.py | 38 ++++++++++-------- scripts/tests/test_parse_clusters.py | 59 ++++++++++++++++++++++++++++ 4 files changed, 84 insertions(+), 21 deletions(-) create mode 100644 scripts/tests/test_parse_clusters.py diff --git a/content/clusters/cluster-10/index.md b/content/clusters/cluster-10/index.md index accb07582b2..3179d5e7358 100644 --- a/content/clusters/cluster-10/index.md +++ b/content/clusters/cluster-10/index.md @@ -4,10 +4,10 @@ layout = "cluster" cluster_number = 10 title = "Cluster 10: Qualitative Research — FORRT Open Science Taxonomy" heading_title = "Cluster 10: Qualitative Research" -summary = "FORRT Cluster 10: Qualitative Research. Invite review of: Qualitative Open Science OS Booklet.pdf Description Qualitative research refers to research conducted with non-numeric data, such as interviews, focus groups, ethnographies, photovoice, and others. There are 10 sub-clusters that can help read" -description = "FORRT Cluster 10: Qualitative Research. Invite review of: Qualitative Open Science OS Booklet.pdf Description Qualitative research refers to research conducted with non-numeric data, such as interviews, focus groups, ethnographies, photovoice, and others. There are 10 sub-clusters that can help read" +summary = "FORRT Cluster 10: Qualitative Research. Qualitative research refers to research conducted with non-numeric data, such as interviews, focus groups, ethnographies, photovoice, and others. There are 10 sub-clusters that can help readers understand open science from a qualitative perspective:" +description = "FORRT Cluster 10: Qualitative Research. Qualitative research refers to research conducted with non-numeric data, such as interviews, focus groups, ethnographies, photovoice, and others. There are 10 sub-clusters that can help readers understand open science from a qualitative perspective:" sharing_title = "Cluster 10: Qualitative Research — FORRT Open Science Taxonomy" -sharing_description = "FORRT Cluster 10: Qualitative Research. Invite review of: Qualitative Open Science OS Booklet.pdf Description Qualitative research refers to research conducted with non-numeric data, such as interviews, focus groups, ethnographies, photovoice, and others. There are 10 sub-clusters that can help read" +sharing_description = "FORRT Cluster 10: Qualitative Research. Qualitative research refers to research conducted with non-numeric data, such as interviews, focus groups, ethnographies, photovoice, and others. There are 10 sub-clusters that can help readers understand open science from a qualitative perspective:" keywords = [ "FORRT cluster 10", "open science", "reproducible research", "Qualitative Research" ] diff --git a/data/clusters_v4.json b/data/clusters_v4.json index 39fa5e0f569..66a2b07f123 100644 --- a/data/clusters_v4.json +++ b/data/clusters_v4.json @@ -5407,7 +5407,7 @@ { "number": 10, "name": "Qualitative Research", - "description": "Invite review of: Qualitative Open Science OS Booklet.pdf Description Qualitative research refers to research conducted with non-numeric data, such as interviews, focus groups, ethnographies, photovoice, and others. There are 10 sub-clusters that can help readers understand open science from a qualitative perspective:", + "description": "Qualitative research refers to research conducted with non-numeric data, such as interviews, focus groups, ethnographies, photovoice, and others. There are 10 sub-clusters that can help readers understand open science from a qualitative perspective:", "sub_clusters": [ { "name": "FAIR data and materials: Choosing to share data", diff --git a/scripts/parse_clusters_to_sheet.py b/scripts/parse_clusters_to_sheet.py index 115939e2cad..b0a597d4dcd 100644 --- a/scripts/parse_clusters_to_sheet.py +++ b/scripts/parse_clusters_to_sheet.py @@ -342,7 +342,9 @@ def save_current(): '(' not in clean_bullet # No year in parens ) - if toc_match and not looks_like_citation(clean_bullet) and not is_incomplete_citation: + # A bullet ending in a colon introduces a link on the next line (Cluster 7) + if (toc_match and not looks_like_citation(clean_bullet) and not is_incomplete_citation + and not clean_bullet.endswith(':')): save_current() current_sc = SubCluster( name=clean_bullet, cluster_name=cluster_name, @@ -364,7 +366,8 @@ def save_current(): # Non-bullet line: heading, description, or citation continuation? clean_text, line_annots = extract_annotations(stripped) clean_text = re.sub(r'\s+', ' ', clean_text).strip() - is_indented = raw_line.startswith(' ') # 8+ spaces + # 8+ spaces; a comment marker can sit in front of the indent (Cluster 2) + is_indented = re.sub(r'^\[[a-z]{1,3}\]', '', raw_line).startswith(' ') # 1. Indented lines are always continuations (never headings) if is_indented: @@ -478,15 +481,12 @@ def parse_cluster_11(lines, start, end): description = ' '.join(desc_parts) - # Find where sub-cluster content begins (after separator) - sc_content_start = None + # Sub-cluster content begins at the last "Sub-cluster 1" heading; earlier ones are the ToC + sc_content_start = i for j in range(i, end): - if SEPARATOR_RE.match(lines[j].strip()): - sc_content_start = j + 1 - break - - if sc_content_start is None: - sc_content_start = i + m = C11_SC_RE.match(extract_annotations(lines[j].strip())[0].strip()) + if m and m.group(1) == '1': + sc_content_start = j # Parse sub-clusters sub_clusters = [] @@ -607,16 +607,20 @@ def parse_document(lines): if num <= 10: # Find Description line (or first content line for clusters like 7) desc_start = None - for j in range(line_idx + 1, min(line_idx + 5, end)): - stripped_j = lines[j].strip() - if stripped_j == 'Description': + window = range(line_idx + 1, min(line_idx + 5, end)) + # A Description heading wins over any editor's note above it (Cluster 10) + for j in window: + if lines[j].strip() == 'Description': desc_start = j + 1 break + if desc_start is None: # Accept first non-blank content line as fallback (Cluster 7 format) - if (stripped_j and not CLUSTER_RE.match(stripped_j) - and not SEPARATOR_RE.match(stripped_j)): - desc_start = j - break + for j in window: + stripped_j = lines[j].strip() + if (stripped_j and not CLUSTER_RE.match(stripped_j) + and not SEPARATOR_RE.match(stripped_j)): + desc_start = j + break if desc_start is None: desc_start = line_idx + 1 diff --git a/scripts/tests/test_parse_clusters.py b/scripts/tests/test_parse_clusters.py new file mode 100644 index 00000000000..fca24952374 --- /dev/null +++ b/scripts/tests/test_parse_clusters.py @@ -0,0 +1,59 @@ +"""Regression tests for formatting quirks in the Clusters v4.1 Google Doc.""" +import sys +import unittest +from pathlib import Path + +sys.path.insert(0, str(Path(__file__).resolve().parents[1])) + +from parse_clusters_to_sheet import parse_cluster_11, parse_subclusters_standard + + +class StandardSubClusters(unittest.TestCase): + def names(self, lines, toc): + return [s.name for s in parse_subclusters_standard(lines, 0, len(lines), toc, "Cluster")] + + def test_citation_ending_in_colon_is_not_a_heading(self): + lines = [ + "Rights retention strategies", + "To whom does the paper belong?", + "* SPARC Europe - Rights Retention Helper:", + "https://sparceurope.org/helper/", + ] + self.assertEqual(self.names(lines, ["Rights retention strategies"]), ["Rights retention strategies"]) + + def test_comment_marker_before_indent_is_a_continuation(self): + heading = "Questionable measurement practices (QMPs), validity & reliability issues." + lines = [ + heading, + "* Flake, J. K., & Fried, E. I. (2020). Measurement schmeasurement:", + "[ai] Questionable measurement practices and how to avoid them.", + ] + self.assertEqual(self.names(lines, [heading]), [heading]) + + +class ClusterEleven(unittest.TestCase): + def test_sub_clusters_follow_the_internal_toc_without_a_separator(self): + lines = [ + "Cluster 11: Research Integrity", + "Research Integrity Cluster", + "Cluster Description", + "Research Integrity encompasses standards.", + "", + "Research Integrity (RI) Cluster", + "Cluster Description", + "Sub-cluster 1: Principles", + "Sub-cluster 2: Misconduct", + "", + "Sub-cluster 1: Principles", + "Description: Core principles.", + "Sub-cluster 2: Misconduct", + "Description: Fabrication.", + ] + description, sub_clusters = parse_cluster_11(lines, 0, len(lines)) + self.assertEqual(description, "Research Integrity encompasses standards.") + self.assertEqual([s.name for s in sub_clusters], ["Principles", "Misconduct"]) + self.assertEqual(sub_clusters[0].description, "Core principles.") + + +if __name__ == "__main__": + unittest.main() From ad1a070f0209b231b4f08f39ae6057fd2f059e6c Mon Sep 17 00:00:00 2001 From: Lukas Wallrich Date: Tue, 3 Nov 2026 22:55:18 +0000 Subject: [PATCH 2/7] Test that Cluster 10's editor's note stays out of its description Co-Authored-By: Claude Opus 5.5 --- scripts/tests/test_parse_clusters.py | 18 +++++++++++++++++- 1 file changed, 17 insertions(+), 1 deletion(-) diff --git a/scripts/tests/test_parse_clusters.py b/scripts/tests/test_parse_clusters.py index fca24952374..8565f2dba72 100644 --- a/scripts/tests/test_parse_clusters.py +++ b/scripts/tests/test_parse_clusters.py @@ -5,7 +5,7 @@ sys.path.insert(0, str(Path(__file__).resolve().parents[1])) -from parse_clusters_to_sheet import parse_cluster_11, parse_subclusters_standard +from parse_clusters_to_sheet import parse_cluster_11, parse_document, parse_subclusters_standard class StandardSubClusters(unittest.TestCase): @@ -31,6 +31,22 @@ def test_comment_marker_before_indent_is_a_continuation(self): self.assertEqual(self.names(lines, [heading]), [heading]) +class ClusterDescriptions(unittest.TestCase): + def test_editors_note_above_description_heading_is_left_out(self): + lines = [ + "Cluster 1: First", + "Description", + "First description.", + "", + "Cluster 10: Qualitative Research", + "Invite review of: Booklet.pdf", + "Description", + "Qualitative research description.", + ] + clusters = parse_document(lines + ["Cluster 11: Research Integrity"]) + self.assertEqual(clusters[1].description, "Qualitative research description.") + + class ClusterEleven(unittest.TestCase): def test_sub_clusters_follow_the_internal_toc_without_a_separator(self): lines = [ From b968d6b3aa8c80cc31a35d6b67086f8817bcfb92 Mon Sep 17 00:00:00 2001 From: Lukas Wallrich Date: Wed, 4 Nov 2026 16:47:00 +0000 Subject: [PATCH 3/7] Keep each cluster's references separate and tidy looked-up citations Sub-cluster names repeat across clusters, so grouping references by name alone gave both "Reflexivity and positionality" sections the same combined list. The export now groups them by cluster as well. Citations returned by doi.org lose stray whitespace, the "Portico" publisher, capitalised surnames and titles cut off at a line break. Moves the stated-count test from #980 here and runs the cluster tests on relevant PRs. Co-Authored-By: Claude Opus 5.5 --- .github/workflows/README.md | 7 ++++ .github/workflows/cluster-tests.yaml | 30 +++++++++++++++ CONTRIBUTING.md | 2 + scripts/parse_clusters_to_sheet.py | 47 ++++++++++++++++++++--- scripts/tests/test_clusters_data.py | 22 +++++++++++ scripts/tests/test_parse_clusters.py | 57 +++++++++++++++++++++++++++- 6 files changed, 158 insertions(+), 7 deletions(-) create mode 100644 .github/workflows/cluster-tests.yaml create mode 100644 scripts/tests/test_clusters_data.py diff --git a/.github/workflows/README.md b/.github/workflows/README.md index bcdec68b85c..11034b074f4 100644 --- a/.github/workflows/README.md +++ b/.github/workflows/README.md @@ -84,6 +84,13 @@ Triggers `deploy.yaml` after successful processing via `repository_dispatch`. +### [cluster-tests.yaml](workflows/cluster-tests.yaml) +**Clusters parser regression tests and stated sub-cluster counts** + +| Trigger | Runs on | +|---------|---------| +| Pull requests changing the clusters data, parser or tests | PR branches | + ### [check_images.yaml](workflows/check_images.yaml) **Image validation in PRs** diff --git a/.github/workflows/cluster-tests.yaml b/.github/workflows/cluster-tests.yaml new file mode 100644 index 00000000000..0df4cd336d3 --- /dev/null +++ b/.github/workflows/cluster-tests.yaml @@ -0,0 +1,30 @@ +name: Cluster Tests + +# ======================= +# Clusters data checks +# ======================= +# Purpose: Runs the parser regression tests and checks the stated sub-cluster counts +# Triggers: PRs that change the clusters data, its parser or these tests + +on: + pull_request: + paths: + - 'data/clusters_v4.json' + - 'scripts/parse_clusters_to_sheet.py' + - 'scripts/tests/test_clusters_data.py' + - 'scripts/tests/test_parse_clusters.py' + - '.github/workflows/cluster-tests.yaml' + +permissions: + contents: read + +jobs: + cluster-tests: + runs-on: ubuntu-latest + + steps: + - name: Checkout repository + uses: actions/checkout@v6 + + - name: Run cluster tests + run: python3 -m unittest discover -s scripts/tests -p 'test_*clusters*.py' diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 05e768432bb..06d458b5065 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -153,6 +153,8 @@ If a contribution amounts to running a single prompt, please consider posting th ### Content, Licensing & Fact-Checking +**Generated content:** `data/clusters_v4.json` and `content/clusters/cluster-N/index.md` are generated, so never edit them by hand. Correct the [Clusters v4.1 Google Doc](https://docs.google.com/document/d/1_TRh7z3Bv_tdxGqjdWMm4kfQerTYvYw3e4wvQLNpTDQ/edit), then run `python3 scripts/parse_clusters_to_sheet.py --json-only` and `python3 scripts/generate_cluster_pages.py`. + - Please **fact-check** anything you add and cite sources where relevant, so the site stays accurate and trustworthy. - The repository is distributed under [CC BY-NC-SA 4.0](LICENSE.md). Make sure you have the right to contribute the material and retain attribution and source licence notices. - Under the existing contribution policy, unless you tell us otherwise, contributions are assumed to be offered under [**CC BY 4.0**](https://creativecommons.org/licenses/by/4.0/). diff --git a/scripts/parse_clusters_to_sheet.py b/scripts/parse_clusters_to_sheet.py index b0a597d4dcd..d7f3d77854b 100644 --- a/scripts/parse_clusters_to_sheet.py +++ b/scripts/parse_clusters_to_sheet.py @@ -1,6 +1,10 @@ #!/usr/bin/env python3 """Parse FORRT Clusters v4.1 Google Doc and populate a Google Sheet. +data/clusters_v4.json is generated by this script: never edit it by hand. Correct +the Google Doc (or this parser) and re-run with --json-only, then run +generate_cluster_pages.py. + Usage: python parse_clusters_to_sheet.py # Full run python parse_clusters_to_sheet.py --dry-run # Parse only, print stats @@ -54,6 +58,7 @@ class SubCluster: @dataclass class Publication: + cluster: str sub_cluster: str doi: str apa_reference: str @@ -662,6 +667,7 @@ def build_publications(clusters): text, annots = clean_citation_text(raw_cite) doi = extract_doi(text) pub = Publication( + cluster=cluster.name, sub_cluster=sc.name, doi=doi or '', apa_reference=text, # Will be replaced by doi.org lookup if successful @@ -673,6 +679,29 @@ def build_publications(clusters): return publications +def tidy_lookup_citation(apa, bibtex=''): + """Repair known defects in the APA text doi.org returns.""" + apa = ' '.join(apa.split()) + + # A line break in a conference title can cut the title off in the APA text + booktitle = re.search(r'booktitle=\{([^}]*)\}', bibtex) + if booktitle and '\n' in booktitle.group(1): + full_title = ' '.join(booktitle.group(1).split()) + if full_title not in apa: + apa = apa.replace(booktitle.group(1).split('\n')[0].strip(), full_title) + + # Wiley records name the Portico archive as the publisher + apa = re.sub(r'\. Portico\. (?=https://doi\.org/)', '. ', apa) + + # Some records give surnames in capitals. Requiring an initial leaves organisations alone. + year = re.search(r'\(\d{4}', apa) + if year: + authors = re.sub(r"\b(?!III\b)[^\W\d_a-z]{3,}(?:-[^\W\d_a-z]{2,})*(?=, [A-Z]\.)", + lambda m: m.group(0).title(), apa[:year.start()]) + apa = authors + apa[year.start():] + return apa + + # --- DOI lookup --- class DOILookup: def __init__(self, cache_file): @@ -956,12 +985,12 @@ def _clean_html_entities(text): return html.unescape(text) if text else text -def export_json(clusters, publications): - """Export clusters data as JSON for Hugo to consume.""" - # Build a lookup: (sub_cluster_name) -> list of publications +def build_export(clusters, publications): + """Build the data written to clusters_v4.json.""" + # Sub-cluster names repeat across clusters ("Reflexivity and positionality") pub_by_sc = {} for pub in publications: - pub_by_sc.setdefault(pub.sub_cluster, []).append(pub) + pub_by_sc.setdefault((pub.cluster, pub.sub_cluster), []).append(pub) data = {"clusters": []} for c in clusters: @@ -972,7 +1001,7 @@ def export_json(clusters, publications): "sub_clusters": [], } for sc in c.sub_clusters: - pubs = pub_by_sc.get(sc.name, []) + pubs = pub_by_sc.get((c.name, sc.name), []) sc_obj = { "name": sc.name, "description": sc.description, @@ -987,6 +1016,12 @@ def export_json(clusters, publications): } cluster_obj["sub_clusters"].append(sc_obj) data["clusters"].append(cluster_obj) + return data + + +def export_json(clusters, publications): + """Export clusters data as JSON for Hugo to consume.""" + data = build_export(clusters, publications) # Write to data/ directory (relative to repo root) repo_root = os.path.dirname(SCRIPT_DIR) @@ -1052,7 +1087,7 @@ def main(): continue result = doi_lookup.lookup(pub.doi) if result: - pub.apa_reference = result['apa'] + pub.apa_reference = tidy_lookup_citation(result['apa'], result.get('bibtex', '')) pub.bibtex = result.get('bibtex', '') pub.auto_ref = True if (i + 1) % 100 == 0: diff --git a/scripts/tests/test_clusters_data.py b/scripts/tests/test_clusters_data.py new file mode 100644 index 00000000000..5bd00f01bad --- /dev/null +++ b/scripts/tests/test_clusters_data.py @@ -0,0 +1,22 @@ +"""Check data/clusters_v4.json against what its cluster descriptions state.""" +import json +import re +import unittest +from pathlib import Path + +DATA = Path(__file__).resolve().parents[2] / "data" / "clusters_v4.json" +STATED_COUNT = re.compile(r"(?:There are|has) (\d+) sub-clusters") + + +class StatedSubClusterCounts(unittest.TestCase): + def test_descriptions_match_listed_sub_clusters(self): + clusters = json.loads(DATA.read_text(encoding="utf-8"))["clusters"] + for cluster in clusters: + stated = STATED_COUNT.search(cluster["description"]) + if stated: + with self.subTest(cluster=cluster["number"]): + self.assertEqual(int(stated.group(1)), len(cluster["sub_clusters"])) + + +if __name__ == "__main__": + unittest.main() diff --git a/scripts/tests/test_parse_clusters.py b/scripts/tests/test_parse_clusters.py index 8565f2dba72..ea08d5464bd 100644 --- a/scripts/tests/test_parse_clusters.py +++ b/scripts/tests/test_parse_clusters.py @@ -5,7 +5,16 @@ sys.path.insert(0, str(Path(__file__).resolve().parents[1])) -from parse_clusters_to_sheet import parse_cluster_11, parse_document, parse_subclusters_standard +from parse_clusters_to_sheet import ( + Cluster, + SubCluster, + build_export, + build_publications, + parse_cluster_11, + parse_document, + parse_subclusters_standard, + tidy_lookup_citation, +) class StandardSubClusters(unittest.TestCase): @@ -71,5 +80,51 @@ def test_sub_clusters_follow_the_internal_toc_without_a_separator(self): self.assertEqual(sub_clusters[0].description, "Core principles.") +class Export(unittest.TestCase): + def test_sub_clusters_sharing_a_name_keep_their_own_references(self): + def cluster(number, name, citation): + sub = SubCluster("Reflexivity", name, "", "", [citation]) + return Cluster(number, name, "", "", [sub]) + + clusters = [cluster(3, "Three", "Doe, A. (2020). From three."), cluster(10, "Ten", "Roe, B. (2021). From ten.")] + exported = build_export(clusters, build_publications(clusters))["clusters"] + lists = [[p["apa"] for p in c["sub_clusters"][0]["publications"]] for c in exported] + self.assertEqual(lists, [["Doe, A. (2020). From three."], ["Roe, B. (2021). From ten."]]) + + +class LookupCitations(unittest.TestCase): + def test_conference_title_cut_at_a_line_break_is_restored(self): + apa = "Doe, A. (2018). Title. 22nd Conference on Electronic. https://doi.org/10.1/x" + bibtex = "@inproceedings{d, booktitle={22nd Conference on Electronic\n\t\tPublishing}, year={2018}}" + self.assertEqual( + tidy_lookup_citation(apa, bibtex), + "Doe, A. (2018). Title. 22nd Conference on Electronic Publishing. https://doi.org/10.1/x", + ) + + def test_complete_title_with_a_line_break_is_not_repeated(self): + apa = "Doe, A. (2004). Title. The Handbook for the\n Sciences, 1–2. https://doi.org/10.1/x" + bibtex = "@incollection{d, booktitle={The Handbook for the\n Sciences}, year={2004}}" + self.assertEqual( + tidy_lookup_citation(apa, bibtex), + "Doe, A. (2004). Title. The Handbook for the Sciences, 1–2. https://doi.org/10.1/x", + ) + + def test_portico_is_removed(self): + self.assertEqual( + tidy_lookup_citation("Doe, A. (2014). Title. J, 14(3), 1–2. Portico. https://doi.org/10.1/x"), + "Doe, A. (2014). Title. J, 14(3), 1–2. https://doi.org/10.1/x", + ) + + def test_capitalised_surnames_are_normalised(self): + self.assertEqual( + tidy_lookup_citation("PIÑEIRO, R., & ROSENBLATT, F. (2016). THE TITLE. https://doi.org/10.1/x"), + "Piñeiro, R., & Rosenblatt, F. (2016). THE TITLE. https://doi.org/10.1/x", + ) + + def test_organisations_and_suffixes_keep_their_capitals(self): + for apa in ("KNAW, NFU, & VSNU. (2018). Title.", "Boum II, Y., & Doe, A. (2021). Title."): + self.assertEqual(tidy_lookup_citation(apa), apa) + + if __name__ == "__main__": unittest.main() From 0af6f11dd898c39e1b360107b550408070c0deec Mon Sep 17 00:00:00 2001 From: Lukas Wallrich Date: Wed, 4 Nov 2026 16:47:00 +0000 Subject: [PATCH 4/7] Regenerate the clusters data from the Google Doc data/clusters_v4.json and the cluster pages now come from the generator, with no hand edits. The earlier link, DOI and count corrections were made in the doc. Co-Authored-By: Claude Opus 5.5 --- content/clusters/cluster-2/index.md | 6 +- data/clusters_v4.json | 446 +++++++++------------------- 2 files changed, 148 insertions(+), 304 deletions(-) diff --git a/content/clusters/cluster-2/index.md b/content/clusters/cluster-2/index.md index f2e094aeb4b..67ec4e37d59 100644 --- a/content/clusters/cluster-2/index.md +++ b/content/clusters/cluster-2/index.md @@ -4,10 +4,10 @@ layout = "cluster" cluster_number = 2 title = "Cluster 2: Conceptual and Statistical Knowledge — FORRT Open Science Taxonomy" heading_title = "Cluster 2: Conceptual and Statistical Knowledge" -summary = "FORRT Cluster 2: Conceptual and Statistical Knowledge. Attainment of a grounding in fundamental statistics, measurement, and its implications encompassing conceptual knowledge, application, interpretation and communication of statistical analyses. There are 8 sub-clusters which aim to further par…" -description = "FORRT Cluster 2: Conceptual and Statistical Knowledge. Attainment of a grounding in fundamental statistics, measurement, and its implications encompassing conceptual knowledge, application, interpretation and communication of statistical analyses. There are 8 sub-clusters which aim to further par…" +summary = "FORRT Cluster 2: Conceptual and Statistical Knowledge. Attainment of a grounding in fundamental statistics, measurement, and its implications encompassing conceptual knowledge, application, interpretation and communication of statistical analyses. There are 7 sub-clusters which aim to further par…" +description = "FORRT Cluster 2: Conceptual and Statistical Knowledge. Attainment of a grounding in fundamental statistics, measurement, and its implications encompassing conceptual knowledge, application, interpretation and communication of statistical analyses. There are 7 sub-clusters which aim to further par…" sharing_title = "Cluster 2: Conceptual and Statistical Knowledge — FORRT Open Science Taxonomy" -sharing_description = "FORRT Cluster 2: Conceptual and Statistical Knowledge. Attainment of a grounding in fundamental statistics, measurement, and its implications encompassing conceptual knowledge, application, interpretation and communication of statistical analyses. There are 8 sub-clusters which aim to further par…" +sharing_description = "FORRT Cluster 2: Conceptual and Statistical Knowledge. Attainment of a grounding in fundamental statistics, measurement, and its implications encompassing conceptual knowledge, application, interpretation and communication of statistical analyses. There are 7 sub-clusters which aim to further par…" keywords = [ "FORRT cluster 2", "open science", "reproducible research", "Conceptual and Statistical Knowledge" ] diff --git a/data/clusters_v4.json b/data/clusters_v4.json index 66a2b07f123..8dcffd07ed3 100644 --- a/data/clusters_v4.json +++ b/data/clusters_v4.json @@ -138,6 +138,11 @@ "doi": "10.1177/1745691617751884", "apa": "Vazire, S. (2018). Implications of the Credibility Revolution for Productivity, Creativity, and Progress. Perspectives on Psychological Science, 13(4), 411–417. https://doi.org/10.1177/1745691617751884", "auto_ref": true + }, + { + "doi": "10.1007/s11615-018-0131-7", + "apa": "Wuttke, A. (2018). Forschung als soziales Dilemma: Eine meta-wissenschaftliche Bestandsaufnahme zur Glaubwürdigkeit politikwissenschaftlicher Befunde und ein Appell zur Veränderung akademischer Anreizstrukturen. Politische Vierteljahresschrift, 60(1), 1–19. https://doi.org/10.1007/s11615-018-0131-7", + "auto_ref": true } ] }, @@ -172,7 +177,7 @@ }, { "doi": "10.1111/dewb.12024", - "apa": "Kombe, F., Anunobi, E. N., Tshifugula, N. P., Wassenaar, D., Njadingwe, D., Mwalukore, S., Chinyama, J., Randrianasolo, B., Akindeh, P., Dlamini, P. S., Ramiandrisoa, F. N., & Ranaivo, N. (2013). Promoting Research Integrity in Africa: An African Voice of Concern on Research Misconduct and the Way Forward. Developing World Bioethics, 14(3), 158–166. Portico. https://doi.org/10.1111/dewb.12024", + "apa": "Kombe, F., Anunobi, E. N., Tshifugula, N. P., Wassenaar, D., Njadingwe, D., Mwalukore, S., Chinyama, J., Randrianasolo, B., Akindeh, P., Dlamini, P. S., Ramiandrisoa, F. N., & Ranaivo, N. (2013). Promoting Research Integrity in Africa: An African Voice of Concern on Research Misconduct and the Way Forward. Developing World Bioethics, 14(3), 158–166. https://doi.org/10.1111/dewb.12024", "auto_ref": true }, { @@ -324,7 +329,7 @@ }, { "doi": "10.1002/aepp.13386", - "apa": "Finger, R., Grebitus, C., & Henningsen, A. (2023). Replications in agricultural economics. Applied Economic Perspectives and Policy, 45(3), 1258–1274. Portico. https://doi.org/10.1002/aepp.13386", + "apa": "Finger, R., Grebitus, C., & Henningsen, A. (2023). Replications in agricultural economics. Applied Economic Perspectives and Policy, 45(3), 1258–1274. https://doi.org/10.1002/aepp.13386", "auto_ref": true }, { @@ -344,7 +349,7 @@ }, { "doi": "10.7717/peerj.7654", - "apa": "Kelly, C. D. (2019). Rate and success of study replication in ecology and evolution. PeerJ, 7, e7654. Portico. https://doi.org/10.7717/peerj.7654", + "apa": "Kelly, C. D. (2019). Rate and success of study replication in ecology and evolution. PeerJ, 7, e7654. https://doi.org/10.7717/peerj.7654", "auto_ref": true }, { @@ -384,7 +389,7 @@ }, { "doi": "10.1111/lang.12286", - "apa": "Marsden, E., Morgan‐Short, K., Thompson, S., & Abugaber, D. (2018). Replication in Second Language Research: Narrative and Systematic Reviews and Recommendations for the Field. Language Learning, 68(2), 321–391. Portico. https://doi.org/10.1111/lang.12286", + "apa": "Marsden, E., Morgan‐Short, K., Thompson, S., & Abugaber, D. (2018). Replication in Second Language Research: Narrative and Systematic Reviews and Recommendations for the Field. Language Learning, 68(2), 321–391. https://doi.org/10.1111/lang.12286", "auto_ref": true }, { @@ -445,7 +450,7 @@ }, { "doi": "10.1002/9781119095910.ch2", - "apa": "Button, K. S., & Munafò, M. R. (2017). Powering Reproducible Research. Psychological Science Under Scrutiny, 22–33. Portico. https://doi.org/10.1002/9781119095910.ch2", + "apa": "Button, K. S., & Munafò, M. R. (2017). Powering Reproducible Research. Psychological Science Under Scrutiny, 22–33. https://doi.org/10.1002/9781119095910.ch2", "auto_ref": true }, { @@ -484,13 +489,13 @@ "auto_ref": true }, { - "doi": "10.1098/rsos.251997", - "apa": "Krähmer, D., Schächtele, L., & Auspurg, K. (2026). Code sharing and reproducibility in survey-based social research: evidence from a large-scale audit. Royal Society Open Science, 13(3). https://doi.org/10.1098/rsos.251997", + "doi": "10.1177/2515245918810225", + "apa": "Klein, R. A., Vianello, M., Hasselman, F., Adams, B. G., Adams, R. B., Alper, S., Aveyard, M., Axt, J. R., Babalola, M. T., Bahník, Š., Batra, R., Berkics, M., Bernstein, M. J., Berry, D. R., Bialobrzeska, O., Binan, E. D., Bocian, K., Brandt, M. J., Busching, R., … Nosek, B. A. (2018). Many Labs 2: Investigating Variation in Replicability Across Samples and Settings. Advances in Methods and Practices in Psychological Science, 1(4), 443–490. https://doi.org/10.1177/2515245918810225", "auto_ref": true }, { - "doi": "10.1177/2515245918810225", - "apa": "Klein, R. A., Vianello, M., Hasselman, F., Adams, B. G., Adams, R. B., Alper, S., Aveyard, M., Axt, J. R., Babalola, M. T., Bahník, Š., Batra, R., Berkics, M., Bernstein, M. J., Berry, D. R., Bialobrzeska, O., Binan, E. D., Bocian, K., Brandt, M. J., Busching, R., … Nosek, B. A. (2018). Many Labs 2: Investigating Variation in Replicability Across Samples and Settings. Advances in Methods and Practices in Psychological Science, 1(4), 443–490. https://doi.org/10.1177/2515245918810225", + "doi": "10.1098/rsos.251997", + "apa": "Krähmer, D., Schächtele, L., & Auspurg, K. (2026). Code sharing and reproducibility in survey-based social research: evidence from a large-scale audit. Royal Society Open Science, 13(3). https://doi.org/10.1098/rsos.251997", "auto_ref": true }, { @@ -530,7 +535,7 @@ }, { "doi": "10.31219/osf.io/5dar8", - "apa": "Silverstein, P., Elman, C., Montoya, A. K., McGillivray, B., Pennington, C. R., Harrison, C. H., Steltenpohl, C. N., Röer, J. P., Corker, K. S., Charron, L. M., Elsherif, M. M., na, ana, Hayes-Harb, R., Grinschgl, S., Neal, T. M. S., Evans, T. R., Karhulahti, V.-M., Krenzer, W. L. D., Belaus, A., … Syed, M. (2023). A Guide for Social Science Journal Editors on Easing into Open Science. https://doi.org/10.31219/osf.io/5dar8", + "apa": "Silverstein, P., Elman, C., Montoya, A. K., McGillivray, B., Pennington, C. R., Harrison, C. H., Steltenpohl, C. N., Röer, J. P., Corker, K. S., Charron, L. M., Elsherif, M. M., na, ana, Hayes-Harb, R., Grinschgl, S., Neal, T. M. S., Evans, T. R., Karhulahti, V.-M., Krenzer, W. L. D., Belaus, A., … Syed, M. (2023). A Guide for Social Science Journal Editors on Easing into Open Science. https://doi.org/10.31219/osf.io/5dar8", "auto_ref": true } ] @@ -540,13 +545,13 @@ "description": "Engaging in Open and Reproducible Science practices comes with ethical challenges that need to be sensitively navigated (e.g. when sharing data openly).", "publications": [ { - "doi": "10.1177/03616843211030926", - "apa": "Brabeck, M. M. (2021). Open Science and Feminist Ethics: Promises and Challenges of Open Access. Psychology of Women Quarterly, 45(4), 457–474. https://doi.org/10.1177/03616843211030926", + "doi": "10.1073/pnas.1719557115", + "apa": "Bol, T., de Vaan, M., & van de Rijt, A. (2018). The Matthew effect in science funding. Proceedings of the National Academy of Sciences, 115(19), 4887–4890. https://doi.org/10.1073/pnas.1719557115", "auto_ref": true }, { - "doi": "10.1073/pnas.1719557115", - "apa": "Bol, T., de Vaan, M., & van de Rijt, A. (2018). The Matthew effect in science funding. Proceedings of the National Academy of Sciences, 115(19), 4887–4890. https://doi.org/10.1073/pnas.1719557115", + "doi": "10.1177/03616843211030926", + "apa": "Brabeck, M. M. (2021). Open Science and Feminist Ethics: Promises and Challenges of Open Access. Psychology of Women Quarterly, 45(4), 457–474. https://doi.org/10.1177/03616843211030926", "auto_ref": true }, { @@ -732,7 +737,7 @@ }, { "doi": "10.1002/jcpy.1209", - "apa": "Pham, M. T., & Oh, T. T. (2021). Preregistration Is Neither Sufficient nor Necessary for Good Science. Journal of Consumer Psychology, 31(1), 163–176. Portico. https://doi.org/10.1002/jcpy.1209", + "apa": "Pham, M. T., & Oh, T. T. (2021). Preregistration Is Neither Sufficient nor Necessary for Good Science. Journal of Consumer Psychology, 31(1), 163–176. https://doi.org/10.1002/jcpy.1209", "auto_ref": true }, { @@ -767,7 +772,7 @@ }, { "doi": "10.1016/j.tourman.2024.105061", - "apa": "Souza-Neto, V., & Moyle, B. (2025). Preregistration is not a panacea, but why? A rejoinder to “infusing preregistration into tourism research.” Tourism Management, 107, 105061. https://doi.org/10.1016/j.tourman.2024.105061", + "apa": "Souza-Neto, V., & Moyle, B. (2025). Preregistration is not a panacea, but why? A rejoinder to “infusing preregistration into tourism research.” Tourism Management, 107, 105061. https://doi.org/10.1016/j.tourman.2024.105061", "auto_ref": true }, { @@ -782,7 +787,7 @@ { "number": 2, "name": "Conceptual and Statistical Knowledge", - "description": "Attainment of a grounding in fundamental statistics, measurement, and its implications encompassing conceptual knowledge, application, interpretation and communication of statistical analyses. There are 8 sub-clusters which aim to further parse the learning and teaching process:", + "description": "Attainment of a grounding in fundamental statistics, measurement, and its implications encompassing conceptual knowledge, application, interpretation and communication of statistical analyses. There are 7 sub-clusters which aim to further parse the learning and teaching process:", "sub_clusters": [ { "name": "Effect sizes, statistical power, simulations, & confidence intervals.", @@ -815,7 +820,7 @@ }, { "doi": "10.31219/osf.io/e3afx", - "apa": "Buchanan, E. M., Elsherif, M. M., Geller, J., Aberson, C., Gurkan, N., Ambrosini, E., Heyman, T., Montefinese, M., vanpaemel, wolf, Barzykowski, K., Batres, C., Fellnhofer, K., Huang, G., McFall, J. P., Ribeiro, G., Röer, J. P., Ulloa Fulgeri, J. L., Roettger, T. B., Valentine, K. D., … Lewis, S. C. (2023). Accuracy in Parameter Estimation and Simulation Approaches for Sample Size Planning with Multiple Stimuli. https://doi.org/10.31219/osf.io/e3afx", + "apa": "Buchanan, E. M., Elsherif, M. M., Geller, J., Aberson, C., Gurkan, N., Ambrosini, E., Heyman, T., Montefinese, M., vanpaemel, wolf, Barzykowski, K., Batres, C., Fellnhofer, K., Huang, G., McFall, J. P., Ribeiro, G., Röer, J. P., Ulloa Fulgeri, J. L., Roettger, T. B., Valentine, K. D., … Lewis, S. C. (2023). Accuracy in Parameter Estimation and Simulation Approaches for Sample Size Planning with Multiple Stimuli. https://doi.org/10.31219/osf.io/e3afx", "auto_ref": true }, { @@ -935,6 +940,11 @@ "name": "Limitations and benefits of NHST, Bayesian & Likelihood approaches.", "description": "Next to frequentist statistics, there are other quantitative approaches, each with different assumptions and goals. This subcluster summarizes benefits and limitations of each one.", "publications": [ + { + "doi": "10.1257/aeri.20190252", + "apa": "Abadie, A. (2020). Statistical Nonsignificance in Empirical Economics. American Economic Review: Insights, 2(2), 193–208. https://doi.org/10.1257/aeri.20190252", + "auto_ref": true + }, { "doi": "10.1177/0956797613504966", "apa": "Cumming, G. (2013). The New Statistics. Psychological Science, 25(1), 7–29. https://doi.org/10.1177/0956797613504966", @@ -970,11 +980,6 @@ "apa": "Wagenmakers, E.-J., Dutilh, G., & Sarafoglou, A. (2018). The Creativity-Verification Cycle in Psychological Science: New Methods to Combat Old Idols. Perspectives on Psychological Science, 13(4), 418–427. https://doi.org/10.1177/1745691618771357", "auto_ref": true }, - { - "doi": "10.1257/aeri.20190252", - "apa": "Abadie, A. (2020). Statistical Nonsignificance in Empirical Economics. American Economic Review: Insights, 2(2), 193–208. https://doi.org/10.1257/aeri.20190252", - "auto_ref": true - }, { "doi": "10.1007/s11186-025-09614-6", "apa": "Gelman, A., & Higgs, M. (2025). Interrogating the “cargo cult science” metaphor. Theory and Society, 54(2), 197–207. https://doi.org/10.1007/s11186-025-09614-6", @@ -1013,7 +1018,7 @@ }, { "doi": "10.31219/osf.io/ga5fb_v1", - "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", + "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", "auto_ref": true }, { @@ -1068,7 +1073,7 @@ }, { "doi": "10.1080/13803611.2024.2314526", - "apa": "Pownall, M. (2024). Is replication\n possible\n in qualitative research? A response to Makel et al. (2022). Educational Research and Evaluation, 29(1–2), 104–110. https://doi.org/10.1080/13803611.2024.2314526", + "apa": "Pownall, M. (2024). Is replication possible in qualitative research? A response to Makel et al. (2022). Educational Research and Evaluation, 29(1–2), 104–110. https://doi.org/10.1080/13803611.2024.2314526", "auto_ref": true }, { @@ -1186,7 +1191,7 @@ }, { "doi": "10.1037/0003-066X.49.12.997", - "apa": "Cohen, J. (1994). The earth is round (p < .05). American Psychologist, 49(12), 997–1003. https://doi.org/10.1037/0003-066x.49.12.997", + "apa": "Cohen, J. (1994). The earth is round (p < .05). American Psychologist, 49(12), 997–1003. https://doi.org/10.1037/0003-066x.49.12.997", "auto_ref": true }, { @@ -1206,7 +1211,7 @@ }, { "doi": "10.4135/9781412986311.n21", - "apa": "Gigerenzer, G., Krauss, S., & Vitouch, O. (2004). The Null Ritual: What You Always Wanted to Know About Significance Testing but\n Were Afraid to Ask. The SAGE Handbook of Quantitative Methodology for the Social Sciences, 392–409. https://doi.org/10.4135/9781412986311.n21", + "apa": "Gigerenzer, G., Krauss, S., & Vitouch, O. (2004). The Null Ritual: What You Always Wanted to Know About Significance Testing but Were Afraid to Ask. The SAGE Handbook of Quantitative Methodology for the Social Sciences, 392–409. https://doi.org/10.4135/9781412986311.n21", "auto_ref": true }, { @@ -1231,7 +1236,7 @@ }, { "doi": "10.1080/00031305.2016.1154108", - "apa": "Wasserstein, R. L., & Lazar, N. A. (2016). The ASA Statement on\n p\n -Values: Context, Process, and Purpose. The American Statistician, 70(2), 129–133. https://doi.org/10.1080/00031305.2016.1154108", + "apa": "Wasserstein, R. L., & Lazar, N. A. (2016). The ASA Statement on p -Values: Context, Process, and Purpose. The American Statistician, 70(2), 129–133. https://doi.org/10.1080/00031305.2016.1154108", "auto_ref": true } ] @@ -1494,7 +1499,7 @@ }, { "doi": "10.1111/dewb.12014", - "apa": "Kamuya, D. M., Marsh, V., Kombe, F. K., Geissler, P. W., & Molyneux, S. C. (2013). Engaging Communities to Strengthen Research Ethics in Low‐Income Settings: Selection and Perceptions of Members of a Network of Representatives in Coastal Kenya. Developing World Bioethics, 13(1), 10–20. Portico. https://doi.org/10.1111/dewb.12014", + "apa": "Kamuya, D. M., Marsh, V., Kombe, F. K., Geissler, P. W., & Molyneux, S. C. (2013). Engaging Communities to Strengthen Research Ethics in Low‐Income Settings: Selection and Perceptions of Members of a Network of Representatives in Coastal Kenya. Developing World Bioethics, 13(1), 10–20. https://doi.org/10.1111/dewb.12014", "auto_ref": true }, { @@ -1530,7 +1535,7 @@ "publications": [ { "doi": "10.4000/proceedings.elpub.2018.23", - "apa": "Albornoz, D., Huang, M., Martin, I. M., Mateus, M., Touré, A. Y., & Chan, L. (2018). Framing Power: Tracing Key Discourses in Open Science Policies. 22nd International Conference on Electronic. https://doi.org/10.4000/proceedings.elpub.2018.23", + "apa": "Albornoz, D., Huang, M., Martin, I. M., Mateus, M., Touré, A. Y., & Chan, L. (2018). Framing Power: Tracing Key Discourses in Open Science Policies. 22nd International Conference on Electronic Publishing. https://doi.org/10.4000/proceedings.elpub.2018.23", "auto_ref": true }, { @@ -1601,7 +1606,7 @@ }, { "doi": "10.31219/osf.io/ga5fb_v1", - "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", + "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", "auto_ref": true }, { @@ -1631,7 +1636,7 @@ }, { "doi": "10.1111/spc3.12735", - "apa": "Jamieson, M. K., Govaart, G. H., & Pownall, M. (2023). Reflexivity in quantitative research: A rationale and beginner’s guide. Social and Personality Psychology Compass, 17(4). Portico. https://doi.org/10.1111/spc3.12735", + "apa": "Jamieson, M. K., Govaart, G. H., & Pownall, M. (2023). Reflexivity in quantitative research: A rationale and beginner’s guide. Social and Personality Psychology Compass, 17(4). https://doi.org/10.1111/spc3.12735", "auto_ref": true }, { @@ -1651,103 +1656,13 @@ }, { "doi": "10.1002/ecs2.70168", - "apa": "Phurisamban, R., Luna, E., Eyster, H. N., Chignell, S., & Koppes, M. (2025). Shedding the cloak of neutrality: A guide for reflexive practices to make the sciences more inclusive and just. Ecosphere, 16(4). Portico. https://doi.org/10.1002/ecs2.70168", + "apa": "Phurisamban, R., Luna, E., Eyster, H. N., Chignell, S., & Koppes, M. (2025). Shedding the cloak of neutrality: A guide for reflexive practices to make the sciences more inclusive and just. Ecosphere, 16(4). https://doi.org/10.1002/ecs2.70168", "auto_ref": true }, { "doi": "10.1007/s40037-018-0412-2", "apa": "Reid, A.-M., Brown, J. M., Smith, J. M., Cope, A. C., & Jamieson, S. (2018). Ethical dilemmas and reflexivity in qualitative research. Perspectives on Medical Education, 7(2), 69–75. https://doi.org/10.1007/s40037-018-0412-2", "auto_ref": true - }, - { - "doi": "10.1007/s13194-020-00324-7", - "apa": "Field, S. M., & Derksen, M. (2020). Experimenter as automaton; experimenter as human: exploring the position of the researcher in scientific research. European Journal for Philosophy of Science, 11(1). https://doi.org/10.1007/s13194-020-00324-7", - "auto_ref": true - }, - { - "doi": "10.31219/osf.io/ga5fb_v1", - "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", - "auto_ref": true - }, - { - "doi": "10.31219/osf.io/6z9c3_v1", - "apa": "Field, S. M. (2025). Open With Care! Consent, Context, and Co-production in Open Qualitative Research. https://doi.org/10.31219/osf.io/6z9c3_v1", - "auto_ref": true - }, - { - "doi": "10.1080/02615470601118662", - "apa": "Fook, J., & Askeland, G. A. (2007). Challenges of Critical Reflection: ‘Nothing Ventured, Nothing Gained.’ Social Work Education, 26(5), 520–533. https://doi.org/10.1080/02615470601118662", - "auto_ref": true - }, - { - "doi": "10.1080/14623943.2015.1134471", - "apa": "Goldblatt, H., & Band-Winterstein, T. (2016). From understanding to insight: using reflexivity to promote students’ learning of qualitative research. Reflective Practice, 17(2), 100–113. https://doi.org/10.1080/14623943.2015.1134471", - "auto_ref": true - }, - { - "doi": "10.1177/1077800403262360", - "apa": "Guillemin, M., & Gillam, L. (2004). Ethics, Reflexivity, and “Ethically Important Moments” in Research. Qualitative Inquiry, 10(2), 261–280. https://doi.org/10.1177/1077800403262360", - "auto_ref": true - }, - { - "doi": "10.1285/i24212113v5i2p63", - "apa": "Hope, E. C., Brugh, C. S., & Nance, A. (2019). In search of a critical stance: Applying qualitative research practices for critical quantitative research in psychology (Version 1.0) [Data set]. University of Salento. https://doi.org/10.1285/I24212113V5I2P63", - "auto_ref": true - }, - { - "doi": "10.1177/1609406919870075", - "apa": "Jacobson, D., & Mustafa, N. (2019). Social Identity Map: A Reflexivity Tool for Practicing Explicit Positionality in Critical Qualitative Research. International Journal of Qualitative Methods, 18. https://doi.org/10.1177/1609406919870075", - "auto_ref": true - }, - { - "doi": "10.1111/spc3.12735", - "apa": "Jamieson, M. K., Govaart, G. H., & Pownall, M. (2023). Reflexivity in quantitative research: A rationale and beginner’s guide. Social and Personality Psychology Compass, 17(4). Portico. https://doi.org/10.1111/spc3.12735", - "auto_ref": true - }, - { - "doi": "10.1017/S1537592720004703", - "apa": "Kapiszewski, D., & Wood, E. J. (2021). Ethics, Epistemology, and Openness in Research with Human Participants. Perspectives on Politics, 20(3), 948–964. https://doi.org/10.1017/s1537592720004703", - "auto_ref": true - }, - { - "doi": "10.1080/14780887.2017.1400144", - "apa": "Lazard, L., & McAvoy, J. (2017). Doing reflexivity in psychological research: What’s the point? What’s the practice? Qualitative Research in Psychology, 17(2), 159–177. https://doi.org/10.1080/14780887.2017.1400144", - "auto_ref": true - }, - { - "doi": "10.1177/1609406916681005", - "apa": "Mao, L., Mian Akram, A., Chovanec, D., & Underwood, M. L. (2016). Embracing the Spiral. International Journal of Qualitative Methods, 15(1). https://doi.org/10.1177/1609406916681005", - "auto_ref": true - }, - { - "doi": "10.1615/jwomenminorscieneng.2022044277", - "apa": "Martin, J. P., Desing, R., & Borrego, M. (2022). POSITIONALITY STATEMENTS ARE JUST THE TIP OF THE ICEBERG: MOVING TOWARDS A REFLEXIVE PROCESS. Journal of Women and Minorities in Science and Engineering, 28(4), v–vii. https://doi.org/10.1615/jwomenminorscieneng.2022044277", - "auto_ref": true - }, - { - "doi": "", - "apa": "Pham, J., Perry-Wilson, T., Holmes, K., Schroeder, G., Reyes, A., & Pollok, M. (2025). The power of decolonizing research practices. The Professional Counselor, 15(1). https://tpcjournal.nbcc.org/the-power-of-decolonizing-research-practices", - "auto_ref": false - }, - { - "doi": "", - "apa": "Prosser, A., (2025). Unheard, or unspoken? How listening to qualitative researcher voices will shape the future of open research [Plenary slides]. In Qualitative Open Science: Challenges, Opportunities, Tensions, and Synergies (Plenary session). Community of Practice for Naturally Occurring Data. https://osf.io/vnm7p", - "auto_ref": false - }, - { - "doi": "", - "apa": "Prosser, A., (2025). Unheard, or unspoken? How listening to qualitative researcher voices will shape the future of open research [Video]. In Qualitative Open Science: Challenges, Opportunities, Tensions, and Synergies (Plenary session). Community of Practice for Naturally Occurring Data. https://osf.io/pxcy5", - "auto_ref": false - }, - { - "doi": "10.1007/s40037-018-0412-2", - "apa": "Reid, A.-M., Brown, J. M., Smith, J. M., Cope, A. C., & Jamieson, S. (2018). Ethical dilemmas and reflexivity in qualitative research. Perspectives on Medical Education, 7(2), 69–75. https://doi.org/10.1007/s40037-018-0412-2", - "auto_ref": true - }, - { - "doi": "10.36850/mr7", - "apa": "Steltenpohl, C. N., Lustick, H., Meyer, M. S., Lee, L. E., Stegenga, S. M., Standiford Reyes, L., & Renbarger, R. L. (2023). Rethinking Transparency and Rigor from a Qualitative Open Science Perspective. Journal of Trial and Error, 4(1), 47–59. KB. https://doi.org/10.36850/mr7", - "auto_ref": true } ] }, @@ -1817,7 +1732,7 @@ }, { "doi": "10.1002/leap.1469", - "apa": "Plakhotnik, M. S. (2022). Co‐authoring with undergraduate students: An emerging process from the semi‐periphery of the world of science. Learned Publishing, 35(3), 332–340. Portico. https://doi.org/10.1002/leap.1469", + "apa": "Plakhotnik, M. S. (2022). Co‐authoring with undergraduate students: An emerging process from the semi‐periphery of the world of science. Learned Publishing, 35(3), 332–340. https://doi.org/10.1002/leap.1469", "auto_ref": true }, { @@ -2135,7 +2050,7 @@ }, { "doi": "10.1016/j.cortex.2012.12.016", - "apa": "Chambers, C. D. (2013). Registered Reports: A new publishing initiative at Cortex. Cortex, 49(3), 609–610. https://doi.org/10.1016/j.cortex.2012.12.016", + "apa": "Chambers, C. D. (2013). Registered Reports: A new publishing initiative at Cortex. Cortex, 49(3), 609–610. https://doi.org/10.1016/j.cortex.2012.12.016", "auto_ref": true }, { @@ -2148,11 +2063,6 @@ "apa": "D. Chambers, C., Feredoes, E., D. Muthukumaraswamy, S., & J. Etchells, P. (2014). Instead of “playing the game” it is time to change the rules: Registered Reports at AIMS Neuroscience and beyond. AIMS Neuroscience, 1(1), 4–17. https://doi.org/10.3934/neuroscience.2014.1.4", "auto_ref": true }, - { - "doi": "10.1016/j.cortex.2015.03.022", - "apa": "Chambers, C. D., Dienes, Z., McIntosh, R. D., Rotshtein, P., & Willmes, K. (2015). Registered Reports: Realigning incentives in scientific publishing. Cortex, 66, A1–A2. https://doi.org/10.1016/j.cortex.2015.03.022", - "auto_ref": true - }, { "doi": "10.1038/s41562-021-01193-7", "apa": "Chambers, C. D., & Tzavella, L. (2021). The past, present and future of Registered Reports. Nature Human Behaviour, 6(1), 29–42. https://doi.org/10.1038/s41562-021-01193-7", @@ -2160,7 +2070,7 @@ }, { "doi": "10.1002/ece3.10023", - "apa": "Gya, R., Birkeli, K., Dahle, I. J., Foote, C. G., Geange, S. R., Lynn, J. S., Töpper, J. P., Vandvik, V., Zernichow, C., & Jenkins, G. B. (2023). Registered Reports: A new chapter at Ecology & Evolution. Ecology and Evolution, 13(4). Portico. https://doi.org/10.1002/ece3.10023", + "apa": "Gya, R., Birkeli, K., Dahle, I. J., Foote, C. G., Geange, S. R., Lynn, J. S., Töpper, J. P., Vandvik, V., Zernichow, C., & Jenkins, G. B. (2023). Registered Reports: A new chapter at Ecology & Evolution. Ecology and Evolution, 13(4). https://doi.org/10.1002/ece3.10023", "auto_ref": true }, { @@ -2349,6 +2259,11 @@ "apa": "Kapiszewski, D., & Karcher, S. (2020). Transparency in Practice in Qualitative Research. PS: Political Science & Politics, 54(2), 285–291. https://doi.org/10.1017/s1049096520000955", "auto_ref": true }, + { + "doi": "10.1098/rsos.251997", + "apa": "Krähmer, D., Schächtele, L., & Auspurg, K. (2026). Code sharing and reproducibility in survey-based social research: evidence from a large-scale audit. Royal Society Open Science, 13(3). https://doi.org/10.1098/rsos.251997", + "auto_ref": true + }, { "doi": "10.1037/amp0000151", "apa": "Levitt, H. M., Bamberg, M., Creswell, J. W., Frost, D. M., Josselson, R., & Suárez-Orozco, C. (2018). Journal article reporting standards for qualitative primary, qualitative meta-analytic, and mixed methods research in psychology: The APA Publications and Communications Board task force report. American Psychologist, 73(1), 26–46. https://doi.org/10.1037/amp0000151", @@ -2361,7 +2276,7 @@ }, { "doi": "10.1002/ev.1427", - "apa": "Lincoln, Y. S., & Guba, E. G. (1986). But is it rigorous? Trustworthiness and authenticity in naturalistic evaluation. New Directions for Program Evaluation, 1986(30), 73–84. Portico. https://doi.org/10.1002/ev.1427", + "apa": "Lincoln, Y. S., & Guba, E. G. (1986). But is it rigorous? Trustworthiness and authenticity in naturalistic evaluation. New Directions for Program Evaluation, 1986(30), 73–84. https://doi.org/10.1002/ev.1427", "auto_ref": true }, { @@ -2381,7 +2296,7 @@ }, { "doi": "10.1046/j.1365-2648.2003.02509.x", - "apa": "Mill, J. E., & Ogilvie, L. D. (2003). Establishing methodological rigour in international qualitative nursing research: a case study from Ghana. Journal of Advanced Nursing, 41(1), 80–87. Portico. https://doi.org/10.1046/j.1365-2648.2003.02509.x", + "apa": "Mill, J. E., & Ogilvie, L. D. (2003). Establishing methodological rigour in international qualitative nursing research: a case study from Ghana. Journal of Advanced Nursing, 41(1), 80–87. https://doi.org/10.1046/j.1365-2648.2003.02509.x", "auto_ref": true }, { @@ -2416,7 +2331,7 @@ }, { "doi": "10.1111/bjhp.12393", - "apa": "Shaw, R. L., Bishop, F. L., Horwood, J., Chilcot, J., & Arden, M. A. (2019). Enhancing the quality and transparency of qualitative research methods in health psychology. British Journal of Health Psychology, 24(4), 739–745. Portico. https://doi.org/10.1111/bjhp.12393", + "apa": "Shaw, R. L., Bishop, F. L., Horwood, J., Chilcot, J., & Arden, M. A. (2019). Enhancing the quality and transparency of qualitative research methods in health psychology. British Journal of Health Psychology, 24(4), 739–745. https://doi.org/10.1111/bjhp.12393", "auto_ref": true }, { @@ -2472,7 +2387,7 @@ }, { "doi": "10.1002/pds.5815", - "apa": "Nab, L., Schaffer, A. L., Hulme, W., DeVito, N. J., Dillingham, I., Wiedemann, M., Andrews, C. D., Curtis, H., Fisher, L., Green, A., Massey, J., Walters, C. E., Higgins, R., Cunningham, C., Morley, J., Mehrkar, A., Hart, L., Davy, S., Evans, D., … Goldacre, B. (2024). OpenSAFELY: A platform for analysing electronic health records designed for reproducible research. Pharmacoepidemiology and Drug Safety, 33(6). Portico. https://doi.org/10.1002/pds.5815", + "apa": "Nab, L., Schaffer, A. L., Hulme, W., DeVito, N. J., Dillingham, I., Wiedemann, M., Andrews, C. D., Curtis, H., Fisher, L., Green, A., Massey, J., Walters, C. E., Higgins, R., Cunningham, C., Morley, J., Mehrkar, A., Hart, L., Davy, S., Evans, D., … Goldacre, B. (2024). OpenSAFELY: A platform for analysing electronic health records designed for reproducible research. Pharmacoepidemiology and Drug Safety, 33(6). https://doi.org/10.1002/pds.5815", "auto_ref": true }, { @@ -2488,12 +2403,12 @@ "publications": [ { "doi": "10.7717/peerj-cs.963", - "apa": "Carver, J. C., Weber, N., Ram, K., Gesing, S., & Katz, D. S. (2022). A survey of the state of the practice for research software in the United States. PeerJ Computer Science, 8, e963. Portico. https://doi.org/10.7717/peerj-cs.963", + "apa": "Carver, J. C., Weber, N., Ram, K., Gesing, S., & Katz, D. S. (2022). A survey of the state of the practice for research software in the United States. PeerJ Computer Science, 8, e963. https://doi.org/10.7717/peerj-cs.963", "auto_ref": true }, { "doi": "10.3233/DS-190026", - "apa": "Lamprecht, A.-L., Garcia, L., Kuzak, M., Martinez, C., Arcila, R., Martin Del Pico, E., Dominguez Del Angel, V., van de Sandt, S., Ison, J., Martinez, P. A., McQuilton, P., Valencia, A., Harrow, J., Psomopoulos, F., Gelpi, J. Ll., Chue Hong, N., Goble, C., & Capella-Gutierrez, S. (2019). Towards FAIR principles for research software. Data Science, 3(1), 37–59. https://doi.org/10.3233/ds-190026", + "apa": "Lamprecht, A.-L., Garcia, L., Kuzak, M., Martinez, C., Arcila, R., Martin Del Pico, E., Dominguez Del Angel, V., van de Sandt, S., Ison, J., Martinez, P. A., McQuilton, P., Valencia, A., Harrow, J., Psomopoulos, F., Gelpi, J. Ll., Chue Hong, N., Goble, C., & Capella-Gutierrez, S. (2019). Towards FAIR principles for research software. Data Science, 3(1), 37–59. https://doi.org/10.3233/ds-190026", "auto_ref": true } ] @@ -2519,7 +2434,7 @@ }, { "doi": "10.1002/cpz1.70299", - "apa": "Pejdo, D., Ursić, L., & Marušić, A. (2025). Primer on Reproducibility: Trends, Tools, and Some Tips and Tricks. Current Protocols, 6(1). Portico. https://doi.org/10.1002/cpz1.70299", + "apa": "Pejdo, D., Ursić, L., & Marušić, A. (2025). Primer on Reproducibility: Trends, Tools, and Some Tips and Tricks. Current Protocols, 6(1). https://doi.org/10.1002/cpz1.70299", "auto_ref": true }, { @@ -2728,7 +2643,7 @@ }, { "doi": "10.1002/eahr.500044", - "apa": "Mozersky, J., Parsons, M., Walsh, H., Baldwin, K., McIntosh, T., & DuBois, J. M. (2020). Research Participant Views regarding Qualitative Data Sharing. Ethics & Human Research, 42(2), 13–27. Portico. https://doi.org/10.1002/eahr.500044", + "apa": "Mozersky, J., Parsons, M., Walsh, H., Baldwin, K., McIntosh, T., & DuBois, J. M. (2020). Research Participant Views regarding Qualitative Data Sharing. Ethics & Human Research, 42(2), 13–27. https://doi.org/10.1002/eahr.500044", "auto_ref": true }, { @@ -2753,7 +2668,7 @@ }, { "doi": "10.7717/peerj.4269", - "apa": "Siler, K., Haustein, S., Smith, E., Larivière, V., & Alperin, J. P. (2018). Authorial and institutional stratification in open access publishing: the case of global health research. PeerJ, 6, e4269. Portico. https://doi.org/10.7717/peerj.4269", + "apa": "Siler, K., Haustein, S., Smith, E., Larivière, V., & Alperin, J. P. (2018). Authorial and institutional stratification in open access publishing: the case of global health research. PeerJ, 6, e4269. https://doi.org/10.7717/peerj.4269", "auto_ref": true }, { @@ -2789,7 +2704,7 @@ }, { "doi": "10.1080/13645570310001640699", - "apa": "FIELDING, N. (2004). Getting the most from archived qualitative data: epistemological, practical and professional obstacles. International Journal of Social Research Methodology, 7(1), 97–104. https://doi.org/10.1080/13645570310001640699", + "apa": "Fielding, N. (2004). Getting the most from archived qualitative data: epistemological, practical and professional obstacles. International Journal of Social Research Methodology, 7(1), 97–104. https://doi.org/10.1080/13645570310001640699", "auto_ref": true }, { @@ -2896,7 +2811,7 @@ }, { "doi": "", - "apa": "Github. (2013). Build software better, together. GitHub. https://github.com", + "apa": "GitHub. (2013). Build software better, together. GitHub. https://github.com", "auto_ref": false }, { @@ -2932,7 +2847,7 @@ }, { "doi": "10.1002/ijc.33882", - "apa": "Hepkema, W. M., Horbach, S. P. J. M., Hoek, J. M., & Halffman, W. (2021). Misidentified biomedical resources: Journal guidelines are not a quick fix. International Journal of Cancer, 150(8), 1233–1243. Portico. https://doi.org/10.1002/ijc.33882", + "apa": "Hepkema, W. M., Horbach, S. P. J. M., Hoek, J. M., & Halffman, W. (2021). Misidentified biomedical resources: Journal guidelines are not a quick fix. International Journal of Cancer, 150(8), 1233–1243. https://doi.org/10.1002/ijc.33882", "auto_ref": true }, { @@ -2962,8 +2877,8 @@ }, { "doi": "10.1177/25152459251336130", - "apa": "van Ravenzwaaij, D., de Jong, M., Hoekstra, R., Scheibe, S., Span, M. M., Wessel, I., & Heininga, V. E. (2025). De-Identification When Making Data Sets Findable, Accessible, Interoperable, and Reusable (FAIR): Two Worked Examples From the Behavioral and Social Sciences. Advances in Methods and Practices in Psychological Science, 8(2), 25152459251336130. https://doi.org/10.1177/25152459251336130", - "auto_ref": false + "apa": "van Ravenzwaaij, D., de Jong, M., Hoekstra, R., Scheibe, S., Span, M. M., Wessel, I., & Heininga, V. E. (2025). De-Identification When Making Data Sets Findable, Accessible, Interoperable, and Reusable (FAIR): Two Worked Examples From the Behavioral and Social Sciences. Advances in Methods and Practices in Psychological Science, 8(2). https://doi.org/10.1177/25152459251336130", + "auto_ref": true } ] }, @@ -3093,7 +3008,7 @@ }, { "doi": "10.1098/rsos.180448", - "apa": "Hardwicke, T. E., Mathur, M. B., MacDonald, K., Nilsonne, G., Banks, G. C., Kidwell, M. C., Hofelich Mohr, A., Clayton, E., Yoon, E. J., Henry Tessler, M., Lenne, R. L., Altman, S., Long, B., & Frank, M. C. (2018). Data availability, reusability, and analytic reproducibility: evaluating the impact of a mandatory open data policy at the journal\n Cognition. Royal Society Open Science, 5(8), 180448. https://doi.org/10.1098/rsos.180448", + "apa": "Hardwicke, T. E., Mathur, M. B., MacDonald, K., Nilsonne, G., Banks, G. C., Kidwell, M. C., Hofelich Mohr, A., Clayton, E., Yoon, E. J., Henry Tessler, M., Lenne, R. L., Altman, S., Long, B., & Frank, M. C. (2018). Data availability, reusability, and analytic reproducibility: evaluating the impact of a mandatory open data policy at the journal Cognition. Royal Society Open Science, 5(8), 180448. https://doi.org/10.1098/rsos.180448", "auto_ref": true }, { @@ -3103,12 +3018,12 @@ }, { "doi": "10.7717/peerj.4269", - "apa": "Siler, K., Haustein, S., Smith, E., Larivière, V., & Alperin, J. P. (2018). Authorial and institutional stratification in open access publishing: the case of global health research. PeerJ, 6, e4269. Portico. https://doi.org/10.7717/peerj.4269", + "apa": "Siler, K., Haustein, S., Smith, E., Larivière, V., & Alperin, J. P. (2018). Authorial and institutional stratification in open access publishing: the case of global health research. PeerJ, 6, e4269. https://doi.org/10.7717/peerj.4269", "auto_ref": true }, { "doi": "10.7717/peerj.4375", - "apa": "Piwowar, H., Priem, J., Larivière, V., Alperin, J. P., Matthias, L., Norlander, B., Farley, A., West, J., & Haustein, S. (2018). The state of OA: a large-scale analysis of the prevalence and impact of Open Access articles. PeerJ, 6, e4375. Portico. https://doi.org/10.7717/peerj.4375", + "apa": "Piwowar, H., Priem, J., Larivière, V., Alperin, J. P., Matthias, L., Norlander, B., Farley, A., West, J., & Haustein, S. (2018). The state of OA: a large-scale analysis of the prevalence and impact of Open Access articles. PeerJ, 6, e4375. https://doi.org/10.7717/peerj.4375", "auto_ref": true } ] @@ -3117,6 +3032,11 @@ "name": "Open peer review", "description": "Open peer review typically refers to sharing reviewer reports and/or reviewers signing reviews. It is important to understand which definition is being used to understand the pros and cons.", "publications": [ + { + "doi": "10.1016/j.joi.2025.101760", + "apa": "Álvarez-García, E., García-Costa, D., Squazzoni, F., Malički, M., Mehmani, B., & Grimaldo, F. (2026). Published peer review reports have higher informative content than unpublished reports. Journal of Informetrics, 20(1), 101760. https://doi.org/10.1016/j.joi.2025.101760", + "auto_ref": true + }, { "doi": "", "apa": "Anon. (n.d.). About Meta-Psychology. Meta-Psychology. https://open.lnu.se/index.php/metapsychology/about", @@ -3174,7 +3094,7 @@ }, { "doi": "10.1002/leap.1312", - "apa": "Horbach, S. P. J. M., Hepkema, W. M., & Halffman, W. (2020). The Platform for Responsible Editorial Policies: An initiative to foster editorial transparency in scholarly publishing. Learned Publishing, 33(3), 340–344. Portico. https://doi.org/10.1002/leap.1312", + "apa": "Horbach, S. P. J. M., Hepkema, W. M., & Halffman, W. (2020). The Platform for Responsible Editorial Policies: An initiative to foster editorial transparency in scholarly publishing. Learned Publishing, 33(3), 340–344. https://doi.org/10.1002/leap.1312", "auto_ref": true }, { @@ -3192,11 +3112,6 @@ "apa": "Horbach, S. P. J. M., Ross-Hellauer, T., & Waltman, L. (2022). Sunlight not shadows: Double-anonymized peer review is not the progressive answer to status bias. OSF https://osf.io/preprints/osf/fqb5c_v1", "auto_ref": false }, - { - "doi": "10.1016/j.joi.2025.101760", - "apa": "Álvarez-García, E., García-Costa, D., Squazzoni, F., Malički, M., Mehmani, B., & Grimaldo, F. (2026). Published peer review reports have higher informative content than unpublished reports. Journal of Informetrics, 20(1), 101760. https://doi.org/10.1016/j.joi.2025.101760", - "auto_ref": true - }, { "doi": "10.1037/abn0000426", "apa": "Lynam, D. R., Hyatt, C. S., Hopwood, C. J., Wright, A. G. C., & Miller, J. D. (2019). Should psychologists sign their reviews? Some thoughts and some data. Journal of Abnormal Psychology, 128(6), 541–546. https://doi.org/10.1037/abn0000426", @@ -3278,16 +3193,10 @@ "doi": "", "apa": "Anon. (n.d.). Plan S rights retention strategy. Plan S. https://www.coalition-s.org/rights-retention-strategy", "auto_ref": false - } - ] - }, - { - "name": "SPARC Europe - Rights Retention Helper:", - "description": "", - "publications": [ + }, { "doi": "", - "apa": "https://sparceurope.org/what-we-do/open-access/copyright/project-retain/rights-retention-helper/", + "apa": "SPARC Europe - Rights Retention Helper: https://sparceurope.org/what-we-do/open-access/copyright/project-retain/rights-retention-helper/", "auto_ref": false }, { @@ -3302,7 +3211,7 @@ { "number": 8, "name": "Replication and meta-research", - "description": "Attainment of a grounding in 'replication research', which takes a variety of forms, each with a different purpose and contribution. Replicable science requires replication research. When teaching, students should understand the purpose and need of replications in its variety of forms and be able to conduct (and join) replication projects. There are 6 sub-clusters which aim to further parse the learning and teaching process:", + "description": "Attainment of a grounding in 'replication research', which takes a variety of forms, each with a different purpose and contribution. Replicable science requires replication research. When teaching, students should understand the purpose and need of replications in its variety of forms and be able to conduct (and join) replication projects. There are 7 sub-clusters which aim to further parse the learning and teaching process:", "sub_clusters": [ { "name": "Conducting replication studies; challenges, limitations, and comparisons with the original study", @@ -3467,12 +3376,12 @@ }, { "doi": "10.1002/jrsm.1594", - "apa": "Bartoš, F., Maier, M., Wagenmakers, E., Doucouliagos, H., & Stanley, T. D. (2022). Robust Bayesian meta‐analysis: Model‐averaging across complementary publication bias adjustment methods. Research Synthesis Methods, 14(1), 99–116. Portico. https://doi.org/10.1002/jrsm.1594", + "apa": "Bartoš, F., Maier, M., Wagenmakers, E., Doucouliagos, H., & Stanley, T. D. (2022). Robust Bayesian meta‐analysis: Model‐averaging across complementary publication bias adjustment methods. Research Synthesis Methods, 14(1), 99–116. https://doi.org/10.1002/jrsm.1594", "auto_ref": true }, { "doi": "10.1002/jrsm.1703", - "apa": "Bartoš, F., Maier, M., Wagenmakers, E., Nippold, F., Doucouliagos, H., Ioannidis, J. P. A., Otte, W. M., Sladekova, M., Deresssa, T. K., Bruns, S. B., Fanelli, D., & Stanley, T. D. (2024). Footprint of publication selection bias on meta‐analyses in medicine, environmental sciences, psychology, and economics. Research Synthesis Methods, 15(3), 500–511. Portico. https://doi.org/10.1002/jrsm.1703", + "apa": "Bartoš, F., Maier, M., Wagenmakers, E., Nippold, F., Doucouliagos, H., Ioannidis, J. P. A., Otte, W. M., Sladekova, M., Deresssa, T. K., Bruns, S. B., Fanelli, D., & Stanley, T. D. (2024). Footprint of publication selection bias on meta‐analyses in medicine, environmental sciences, psychology, and economics. Research Synthesis Methods, 15(3), 500–511. https://doi.org/10.1002/jrsm.1703", "auto_ref": true }, { @@ -3491,8 +3400,8 @@ "auto_ref": true }, { - "doi": "https://doi.org/10.1002/jrsm.1467", - "apa": "Hong, S., & Reed, W. R. (2020). Using Monte Carlo experiments to select meta‐analytic estimators. Research Synthesis Methods, 12(2), 192–215. Portico. https://doi.org/10.1002/jrsm.1467", + "doi": "10.1002/jrsm.1467", + "apa": "Hong, S., & Reed, W. R. (2020). Using Monte Carlo experiments to select meta‐analytic estimators. Research Synthesis Methods, 12(2), 192–215. https://doi.org/10.1002/jrsm.1467", "auto_ref": true }, { @@ -3502,7 +3411,7 @@ }, { "doi": "10.1002/jrsm.1663", - "apa": "Ivimey‐Cook, E. R., Noble, D. W. A., Nakagawa, S., Lajeunesse, M. J., & Pick, J. L. (2023). Advice for improving the reproducibility of data extraction in meta‐analysis. Research Synthesis Methods, 14(6), 911–915. Portico. https://doi.org/10.1002/jrsm.1663", + "apa": "Ivimey‐Cook, E. R., Noble, D. W. A., Nakagawa, S., Lajeunesse, M. J., & Pick, J. L. (2023). Advice for improving the reproducibility of data extraction in meta‐analysis. Research Synthesis Methods, 14(6), 911–915. https://doi.org/10.1002/jrsm.1663", "auto_ref": true }, { @@ -3517,7 +3426,7 @@ }, { "doi": "10.1002/jrsm.1703", - "apa": "Bartoš, F., Maier, M., Wagenmakers, E., Nippold, F., Doucouliagos, H., Ioannidis, J. P. A., Otte, W. M., Sladekova, M., Deresssa, T. K., Bruns, S. B., Fanelli, D., & Stanley, T. D. (2024). Footprint of publication selection bias on meta‐analyses in medicine, environmental sciences, psychology, and economics. Research Synthesis Methods, 15(3), 500–511. Portico. https://doi.org/10.1002/jrsm.1703", + "apa": "Bartoš, F., Maier, M., Wagenmakers, E., Nippold, F., Doucouliagos, H., Ioannidis, J. P. A., Otte, W. M., Sladekova, M., Deresssa, T. K., Bruns, S. B., Fanelli, D., & Stanley, T. D. (2024). Footprint of publication selection bias on meta‐analyses in medicine, environmental sciences, psychology, and economics. Research Synthesis Methods, 15(3), 500–511. https://doi.org/10.1002/jrsm.1703", "auto_ref": true }, { @@ -3761,7 +3670,7 @@ { "number": 9, "name": "Academic Structures and Institutions", - "description": "Attainment of a grounding in topics related to academia and academics. Students should understand how individuals, teams, institutions, and academic culture work together to promote (or hinder) openness, inclusion, diversity, equity, and transparency. Gathering perspectives on navigating scientific and academic life. Learning the challenges and rewards in the academic setting, the “hidden curriculum” in academic life. There are 17 sub-clusters which aim to further parse the learning and teaching process:", + "description": "Attainment of a grounding in topics related to academia and academics. Students should understand how individuals, teams, institutions, and academic culture work together to promote (or hinder) openness, inclusion, diversity, equity, and transparency. Gathering perspectives on navigating scientific and academic life. Learning the challenges and rewards in the academic setting, the “hidden curriculum” in academic life. There are 19 sub-clusters which aim to further parse the learning and teaching process:", "sub_clusters": [ { "name": "Accessibility", @@ -3769,7 +3678,7 @@ "publications": [ { "doi": "10.1002/ece3.7009", - "apa": "Geange, S. R., von Oppen, J., Strydom, T., Boakye, M., Gauthier, T. J., Gya, R., Halbritter, A. H., Jessup, L. H., Middleton, S. L., Navarro, J., Pierfederici, M. E., Chacón‐Labella, J., Cotner, S., Farfan‐Rios, W., Maitner, B. S., Michaletz, S. T., Telford, R. J., Enquist, B. J., & Vandvik, V. (2020). Next‐generation field courses: Integrating Open Science and online learning. Ecology and Evolution, 11(8), 3577–3587. Portico. https://doi.org/10.1002/ece3.7009", + "apa": "Geange, S. R., von Oppen, J., Strydom, T., Boakye, M., Gauthier, T. J., Gya, R., Halbritter, A. H., Jessup, L. H., Middleton, S. L., Navarro, J., Pierfederici, M. E., Chacón‐Labella, J., Cotner, S., Farfan‐Rios, W., Maitner, B. S., Michaletz, S. T., Telford, R. J., Enquist, B. J., & Vandvik, V. (2020). Next‐generation field courses: Integrating Open Science and online learning. Ecology and Evolution, 11(8), 3577–3587. https://doi.org/10.1002/ece3.7009", "auto_ref": true }, { @@ -3799,7 +3708,7 @@ }, { "doi": "10.1111/spc3.12847", - "apa": "Puthillam, A., Montilla Doble, L. J., Delos Santos, J. J. I., Elsherif, M. M., Steltenpohl, C. N., Moreau, D., Pownall, M., Silverstein, P., Anand‐Vembar, S., & Kapoor, H. (2023). Guidelines to improve internationalization in the psychological sciences. Social and Personality Psychology Compass, 18(1). Portico. https://doi.org/10.1111/spc3.12847", + "apa": "Puthillam, A., Montilla Doble, L. J., Delos Santos, J. J. I., Elsherif, M. M., Steltenpohl, C. N., Moreau, D., Pownall, M., Silverstein, P., Anand‐Vembar, S., & Kapoor, H. (2023). Guidelines to improve internationalization in the psychological sciences. Social and Personality Psychology Compass, 18(1). https://doi.org/10.1111/spc3.12847", "auto_ref": true }, { @@ -3845,7 +3754,7 @@ }, { "doi": "10.31234/osf.io/6kvqg", - "apa": "Lawson, K. M., Murphy, B., Azpeitia, J., LOMBARD, E., & Pope, T. (2022). Citing decisions in psychology: A roadblock to cumulative and inclusive science. https://doi.org/10.31234/osf.io/6kvqg", + "apa": "Lawson, K. M., Murphy, B., Azpeitia, J., Lombard, E., & Pope, T. (2022). Citing decisions in psychology: A roadblock to cumulative and inclusive science. https://doi.org/10.31234/osf.io/6kvqg", "auto_ref": true }, { @@ -3865,7 +3774,7 @@ }, { "doi": "10.1038/s41586-022-04966-w", - "apa": "Ross, M. B., Glennon, B. M., Murciano-Goroff, R., Berkes, E. G., Weinberg, B. A., & Lane, J. I. (2022). Women are credited less in science than men. Nature, 608(7921), 135–145. https://doi.org/10.1038/s41586-022-04966-w", + "apa": "Ross, M. B., Glennon, B. M., Murciano-Goroff, R., Berkes, E. G., Weinberg, B. A., & Lane, J. I. (2022). Women are credited less in science than men. Nature, 608(7921), 135–145. https://doi.org/10.1038/s41586-022-04966-w", "auto_ref": true }, { @@ -3875,7 +3784,7 @@ }, { "doi": "10.1002/fea2.12040", - "apa": "Smith, C. A., Williams, E. L., Wadud, I. A., & Pirtle, W. N. L. (2021). Cite Black Women: A Critical Praxis (A Statement). Feminist Anthropology, 2(1), 10–17. Portico. https://doi.org/10.1002/fea2.12040", + "apa": "Smith, C. A., Williams, E. L., Wadud, I. A., & Pirtle, W. N. L. (2021). Cite Black Women: A Critical Praxis (A Statement). Feminist Anthropology, 2(1), 10–17. https://doi.org/10.1002/fea2.12040", "auto_ref": true }, { @@ -3911,8 +3820,8 @@ }, { "doi": "10.4000/proceedings.elpub.2018.23", - "apa": "Albornoz, D., Huang, M., Martin, I. M., Mateus, M., Touré, A. Y., & Chan, L. (2018). Framing power: Tracing key discourses in open science policies. In Connecting the Knowledge Commons — From Projects to Sustainable Infrastructure: 22nd International Conference on Electronic Publishing (ELPUB 2018). OpenEdition Press. https://doi.org/10.4000/proceedings.elpub.2018.23", - "auto_ref": false + "apa": "Albornoz, D., Huang, M., Martin, I. M., Mateus, M., Touré, A. Y., & Chan, L. (2018). Framing Power: Tracing Key Discourses in Open Science Policies. 22nd International Conference on Electronic Publishing. https://doi.org/10.4000/proceedings.elpub.2018.23", + "auto_ref": true }, { "doi": "", @@ -4262,6 +4171,11 @@ "apa": "Knibbe, M., de Rijcke, S., & Penders, B. (2025). Care for the soul of science: Equity and virtue in reform and reformation. Cultures of Science, 8(1), 12–23. https://doi.org/10.1177/20966083251329632", "auto_ref": true }, + { + "doi": "10.1038/d41586-026-00981-3", + "apa": "Kwon, D. (2026). Motherhood derails women’s academic careers — these data reveal how and why. Nature, 652(8110), 549–551. https://doi.org/10.1038/d41586-026-00981-3", + "auto_ref": true + }, { "doi": "10.31222/osf.io/zr35u_v1", "apa": "Crespo López, M. de los Á., Pallise Perello, C., de Ridder, J., & Labib, K. (2025). Open Science as Confused: Contradictory and Conflicting Discourses in Open Science Guidance to Researchers. https://doi.org/10.31222/osf.io/zr35u_v1", @@ -4512,7 +4426,7 @@ }, { "doi": "10.1002/ecs2.70168", - "apa": "Phurisamban, R., Luna, E., Eyster, H. N., Chignell, S., & Koppes, M. (2025). Shedding the cloak of neutrality: A guide for reflexive practices to make the sciences more inclusive and just. Ecosphere, 16(4). Portico. https://doi.org/10.1002/ecs2.70168", + "apa": "Phurisamban, R., Luna, E., Eyster, H. N., Chignell, S., & Koppes, M. (2025). Shedding the cloak of neutrality: A guide for reflexive practices to make the sciences more inclusive and just. Ecosphere, 16(4). https://doi.org/10.1002/ecs2.70168", "auto_ref": true }, { @@ -4522,7 +4436,7 @@ }, { "doi": "10.1371/journal.pone.0238518", - "apa": "Risner, L. E., Morin, X. K., Erenrich, E. S., Clifford, P. S., Franke, J., Hurley, I., & Schwartz, N. B. (2020). Leveraging a collaborative consortium model of mentee/mentor training to foster career progression of underrepresented postdoctoral researchers and promote institutional diversity and inclusion. PLOS ONE, 15(9), e0238518. https://doi.org/10.1371/journal.pone.0238518", + "apa": "Risner, L. E., Morin, X. K., Erenrich, E. S., Clifford, P. S., Franke, J., Hurley, I., & Schwartz, N. B. (2020). Leveraging a collaborative consortium model of mentee/mentor training to foster career progression of underrepresented postdoctoral researchers and promote institutional diversity and inclusion. PLOS ONE, 15(9), e0238518. https://doi.org/10.1371/journal.pone.0238518", "auto_ref": true }, { @@ -4573,7 +4487,7 @@ }, { "doi": "10.1111/jopp.12259", - "apa": "Catala, A. (2021). Academic Migration, Linguistic Justice, and Epistemic Injustice*. Journal of Political Philosophy, 30(3), 324–346. Portico. https://doi.org/10.1111/jopp.12259", + "apa": "Catala, A. (2021). Academic Migration, Linguistic Justice, and Epistemic Injustice*. Journal of Political Philosophy, 30(3), 324–346. https://doi.org/10.1111/jopp.12259", "auto_ref": true }, { @@ -4599,7 +4513,7 @@ }, { "doi": "10.1159/000524123", - "apa": "Botha, M., & Gillespie-Lynch, K. (2022). Come as You Are: Examining Autistic Identity Development and the Neurodiversity Movement through an Intersectional Lens. Human Development, 66(2), 93–112. Portico. https://doi.org/10.1159/000524123", + "apa": "Botha, M., & Gillespie-Lynch, K. (2022). Come as You Are: Examining Autistic Identity Development and the Neurodiversity Movement through an Intersectional Lens. Human Development, 66(2), 93–112. https://doi.org/10.1159/000524123", "auto_ref": true }, { @@ -4624,7 +4538,7 @@ }, { "doi": "10.1159/000523723", - "apa": "Dwyer, P. (2022). The Neurodiversity Approach(es): What Are They and What Do They Mean for Researchers? Human Development, 66(2), 73–92. Portico. https://doi.org/10.1159/000523723", + "apa": "Dwyer, P. (2022). The Neurodiversity Approach(es): What Are They and What Do They Mean for Researchers? Human Development, 66(2), 73–92. https://doi.org/10.1159/000523723", "auto_ref": true }, { @@ -4649,7 +4563,7 @@ }, { "doi": "10.1111/cogs.13255", - "apa": "Manalili, M. A. R., Pearson, A., Sulik, J., Creechan, L., Elsherif, M., Murkumbi, I., Azevedo, F., Bonnen, K. L., Kim, J. S., Kording, K., Lee, J. J., Obscura, M., Kapp, S. K., Röer, J. P., & Morstead, T. (2023). From Puzzle to Progress: How Engaging With Neurodiversity Can Improve Cognitive Science. Cognitive Science, 47(2). Portico. https://doi.org/10.1111/cogs.13255", + "apa": "Manalili, M. A. R., Pearson, A., Sulik, J., Creechan, L., Elsherif, M., Murkumbi, I., Azevedo, F., Bonnen, K. L., Kim, J. S., Kording, K., Lee, J. J., Obscura, M., Kapp, S. K., Röer, J. P., & Morstead, T. (2023). From Puzzle to Progress: How Engaging With Neurodiversity Can Improve Cognitive Science. Cognitive Science, 47(2). https://doi.org/10.1111/cogs.13255", "auto_ref": true }, { @@ -4700,7 +4614,7 @@ }, { "doi": "10.31219/osf.io/ga5fb_v1", - "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", + "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", "auto_ref": true }, { @@ -4806,7 +4720,7 @@ }, { "doi": "10.1111/nae2.11", - "apa": "Pickler, R. H., Munro, C. L., & Likis, F. E. (2020). Addressing racism in editorial practices. Nurse Author & Editor, 30(4), 38–40. Portico. https://doi.org/10.1111/nae2.11", + "apa": "Pickler, R. H., Munro, C. L., & Likis, F. E. (2020). Addressing racism in editorial practices. Nurse Author & Editor, 30(4), 38–40. https://doi.org/10.1111/nae2.11", "auto_ref": true }, { @@ -4841,7 +4755,7 @@ }, { "doi": "10.1111/spc3.12068", - "apa": "Salter, P., & Adams, G. (2013). Toward a Critical Race Psychology. Social and Personality Psychology Compass, 7(11), 781–793. Portico. https://doi.org/10.1111/spc3.12068", + "apa": "Salter, P., & Adams, G. (2013). Toward a Critical Race Psychology. Social and Personality Psychology Compass, 7(11), 781–793. https://doi.org/10.1111/spc3.12068", "auto_ref": true }, { @@ -4856,7 +4770,7 @@ }, { "doi": "10.31234/osf.io/7eavc", - "apa": "Torrez, B., Hudson, S. T. J., & Dupree, C. H. (2022). Racial Equity in Social Psychological Science: A Guide for Scholars, Institutions, and the Field. https://doi.org/10.31234/osf.io/7eavc", + "apa": "Torrez, B., Hudson, S. T. J., & Dupree, C. H. (2022). Racial Equity in Social Psychological Science: A Guide for Scholars, Institutions, and the Field. https://doi.org/10.31234/osf.io/7eavc", "auto_ref": true }, { @@ -4866,7 +4780,7 @@ }, { "doi": "10.1002/ejsp.2849", - "apa": "West, K., Greenland, K., van Laar, C., & Barnoth, D. (2022). It’s only discrimination when they do it to us: When White men use ingroup‐serving double standards in definitional boundaries of discrimination. European Journal of Social Psychology, 52(4), 735–747. Portico. https://doi.org/10.1002/ejsp.2849", + "apa": "West, K., Greenland, K., van Laar, C., & Barnoth, D. (2022). It’s only discrimination when they do it to us: When White men use ingroup‐serving double standards in definitional boundaries of discrimination. European Journal of Social Psychology, 52(4), 735–747. https://doi.org/10.1002/ejsp.2849", "auto_ref": true }, { @@ -5009,7 +4923,7 @@ }, { "doi": "10.1111/area.12828", - "apa": "Zebracki, M., & Greatrick, A. (2022). Inclusive LGBTQ+ fieldwork: Advancing spaces of belonging and safety. Area, 54(4), 551–557. Portico. https://doi.org/10.1111/area.12828", + "apa": "Zebracki, M., & Greatrick, A. (2022). Inclusive LGBTQ+ fieldwork: Advancing spaces of belonging and safety. Area, 54(4), 551–557. https://doi.org/10.1111/area.12828", "auto_ref": true } ] @@ -5082,7 +4996,7 @@ }, { "doi": "10.1098/rspb.2019.2047", - "apa": "Chapman, C. A., Bicca-Marques, J. C., Calvignac-Spencer, S., Fan, P., Fashing, P. J., Gogarten, J., Guo, S., Hemingway, C. A., Leendertz, F., Li, B., Matsuda, I., Hou, R., Serio-Silva, J. C., & Chr. Stenseth, N. (2019). Games academics play and their consequences: how authorship,\n h\n -index and journal impact factors are shaping the future of academia. Proceedings of the Royal Society B: Biological Sciences, 286(1916), 20192047. https://doi.org/10.1098/rspb.2019.2047", + "apa": "Chapman, C. A., Bicca-Marques, J. C., Calvignac-Spencer, S., Fan, P., Fashing, P. J., Gogarten, J., Guo, S., Hemingway, C. A., Leendertz, F., Li, B., Matsuda, I., Hou, R., Serio-Silva, J. C., & Chr. Stenseth, N. (2019). Games academics play and their consequences: how authorship, h -index and journal impact factors are shaping the future of academia. Proceedings of the Royal Society B: Biological Sciences, 286(1916), 20192047. https://doi.org/10.1098/rspb.2019.2047", "auto_ref": true }, { @@ -5242,7 +5156,7 @@ }, { "doi": "10.1111/eci.13151", - "apa": "Ioannidis, J. P. A., & Thombs, B. D. (2019). A user’s guide to inflated and manipulated impact factors. European Journal of Clinical Investigation, 49(9). Portico. https://doi.org/10.1111/eci.13151", + "apa": "Ioannidis, J. P. A., & Thombs, B. D. (2019). A user’s guide to inflated and manipulated impact factors. European Journal of Clinical Investigation, 49(9). https://doi.org/10.1111/eci.13151", "auto_ref": true }, { @@ -5302,7 +5216,7 @@ }, { "doi": "10.1002/ecs2.70168", - "apa": "Phurisamban, R., Luna, E., Eyster, H. N., Chignell, S., & Koppes, M. (2025). Shedding the cloak of neutrality: A guide for reflexive practices to make the sciences more inclusive and just. Ecosphere, 16(4). Portico. https://doi.org/10.1002/ecs2.70168", + "apa": "Phurisamban, R., Luna, E., Eyster, H. N., Chignell, S., & Koppes, M. (2025). Shedding the cloak of neutrality: A guide for reflexive practices to make the sciences more inclusive and just. Ecosphere, 16(4). https://doi.org/10.1002/ecs2.70168", "auto_ref": true }, { @@ -5362,7 +5276,7 @@ }, { "doi": "10.1371/journal.pone.0056180", - "apa": "Tressoldi, P. E., Giofré, D., Sella, F., & Cumming, G. (2013). High Impact = High Statistical Standards? Not Necessarily So. PLoS ONE, 8(2), e56180. https://doi.org/10.1371/journal.pone.0056180", + "apa": "Tressoldi, P. E., Giofré, D., Sella, F., & Cumming, G. (2013). High Impact = High Statistical Standards? Not Necessarily So. PLoS ONE, 8(2), e56180. https://doi.org/10.1371/journal.pone.0056180", "auto_ref": true }, { @@ -5387,7 +5301,7 @@ }, { "doi": "10.1093/scipol/scad052", - "apa": "Wang, J., Halffman, W., & Horbach, S. P. J. M. (2023). Listing quality: Chinese journal lists in incoherent valuation regimes. Science and Public Policy, 51(1), 55–66. https://doi.org/10.1093/scipol/scad052", + "apa": "Wang, J., Halffman, W., & Horbach, S. P. J. M. (2023). Listing quality: Chinese journal lists in incoherent valuation regimes. Science and Public Policy, 51(1), 55–66. https://doi.org/10.1093/scipol/scad052", "auto_ref": true }, { @@ -5430,7 +5344,7 @@ }, { "doi": "10.1002/j.1839-4655.2009.tb00145.x", - "apa": "Bishop, L. (2009). Ethical Sharing and Reuse of Qualitative Data. Australian Journal of Social Issues, 44(3), 255–272. Portico. https://doi.org/10.1002/j.1839-4655.2009.tb00145.x", + "apa": "Bishop, L. (2009). Ethical Sharing and Reuse of Qualitative Data. Australian Journal of Social Issues, 44(3), 255–272. https://doi.org/10.1002/j.1839-4655.2009.tb00145.x", "auto_ref": true }, { @@ -5515,13 +5429,13 @@ }, { "doi": "10.1002/eahr.500044", - "apa": "Mozersky, J., Parsons, M., Walsh, H., Baldwin, K., McIntosh, T., & DuBois, J. M. (2020). Research Participant Views regarding Qualitative Data Sharing. Ethics & Human Research, 42(2), 13–27. Portico. https://doi.org/10.1002/eahr.500044", + "apa": "Mozersky, J., Parsons, M., Walsh, H., Baldwin, K., McIntosh, T., & DuBois, J. M. (2020). Research Participant Views regarding Qualitative Data Sharing. Ethics & Human Research, 42(2), 13–27. https://doi.org/10.1002/eahr.500044", "auto_ref": true }, { "doi": "10.4067/S0718-090X2016000300009", - "apa": "Piñeiro, R., & Rosenblatt, F. (2016). Pre-analysis plans for qualitative research. Revista de Ciencia Política, 36(3), 785–796. https://doi.org/10.4067/S0718-090X2016000300009", - "auto_ref": false + "apa": "Piñeiro, R., & Rosenblatt, F. (2016). Pre-Analysis Plans for Qualitative Research. Revista de Ciencia Política (Santiago), 36(3), 785–796. https://doi.org/10.4067/s0718-090x2016000300009", + "auto_ref": true }, { "doi": "10.31234/osf.io/5yw4z", @@ -5581,7 +5495,7 @@ }, { "doi": "10.1002/j.1839-4655.2009.tb00145.x", - "apa": "Bishop, L. (2009). Ethical Sharing and Reuse of Qualitative Data. Australian Journal of Social Issues, 44(3), 255–272. Portico. https://doi.org/10.1002/j.1839-4655.2009.tb00145.x", + "apa": "Bishop, L. (2009). Ethical Sharing and Reuse of Qualitative Data. Australian Journal of Social Issues, 44(3), 255–272. https://doi.org/10.1002/j.1839-4655.2009.tb00145.x", "auto_ref": true }, { @@ -5691,12 +5605,12 @@ }, { "doi": "10.1002/eahr.500044", - "apa": "Mozersky, J., Parsons, M., Walsh, H., Baldwin, K., McIntosh, T., & DuBois, J. M. (2020). Research Participant Views regarding Qualitative Data Sharing. Ethics & Human Research, 42(2), 13–27. Portico. https://doi.org/10.1002/eahr.500044", + "apa": "Mozersky, J., Parsons, M., Walsh, H., Baldwin, K., McIntosh, T., & DuBois, J. M. (2020). Research Participant Views regarding Qualitative Data Sharing. Ethics & Human Research, 42(2), 13–27. https://doi.org/10.1002/eahr.500044", "auto_ref": true }, { "doi": "10.1002/eahr.500044", - "apa": "Mozersky, J., Parsons, M., Walsh, H., Baldwin, K., McIntosh, T., & DuBois, J. M. (2020). Research Participant Views regarding Qualitative Data Sharing. Ethics & Human Research, 42(2), 13–27. Portico. https://doi.org/10.1002/eahr.500044", + "apa": "Mozersky, J., Parsons, M., Walsh, H., Baldwin, K., McIntosh, T., & DuBois, J. M. (2020). Research Participant Views regarding Qualitative Data Sharing. Ethics & Human Research, 42(2), 13–27. https://doi.org/10.1002/eahr.500044", "auto_ref": true }, { @@ -5711,7 +5625,7 @@ }, { "doi": "10.1111/bjso.12576", - "apa": "Prosser, A. M. B., Hamshaw, R. J. T., Meyer, J., Bagnall, R., Blackwood, L., Huysamen, M., Jordan, A., Vasileiou, K., & Walter, Z. (2022). When open data closes the door: A critical examination of the past, present and the potential future for open data guidelines in journals. British Journal of Social Psychology, 62(4), 1635–1653. Portico. https://doi.org/10.1111/bjso.12576", + "apa": "Prosser, A. M. B., Hamshaw, R. J. T., Meyer, J., Bagnall, R., Blackwood, L., Huysamen, M., Jordan, A., Vasileiou, K., & Walter, Z. (2022). When open data closes the door: A critical examination of the past, present and the potential future for open data guidelines in journals. British Journal of Social Psychology, 62(4), 1635–1653. https://doi.org/10.1111/bjso.12576", "auto_ref": true }, { @@ -5781,9 +5695,9 @@ "auto_ref": true }, { - "doi": "", - "apa": "Pownall, M., Talbot, C. V., Henschel, A., Lautarescu, A., Lloyd, K. E., Hartmann, H., ... & Siegel, J. A. (2021). Navigating open science as early career feminist researchers. Psychology of Women Quarterly, 45(4), 526-539.", - "auto_ref": false + "doi": "10.1177/03616843211029255", + "apa": "Pownall, M., Talbot, C. V., Henschel, A., Lautarescu, A., Lloyd, K. E., Hartmann, H., Darda, K. M., Tang, K. T. Y., Carmichael-Murphy, P., & Siegel, J. A. (2021). Navigating Open Science as Early Career Feminist Researchers. Psychology of Women Quarterly, 45(4), 526–539. https://doi.org/10.1177/03616843211029255", + "auto_ref": true }, { "doi": "10.1093/oxfordhb/9780199811755.001.0001", @@ -5817,7 +5731,7 @@ }, { "doi": "10.31219/osf.io/ga5fb_v1", - "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", + "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", "auto_ref": true }, { @@ -5867,19 +5781,14 @@ "auto_ref": true }, { - "doi": "", - "apa": "Kern, Florian & Gleditsch, Kristian. (2017). Exploring Pre-registration and Pre-analysis Plans for Qualitative Inference. 10.13140/RG.2.2.14428.69769.", - "auto_ref": false - }, - { - "doi": "", - "apa": "Silverstein, P., Pennington, C., Branney, P., O’Connor, D., Lawlor, E., O’Brien, E., & Lynott, D. (2024). A registered report survey of open research practices in psychology departments in the UK and Ireland. British Journal of Psychology, 115: 497-534", - "auto_ref": false + "doi": "10.13140/RG.2.2.14428.69769", + "apa": "Kern, F. G., & Gleditsch, K. S. (2017). Exploring Pre-registration and Pre-analysis Plans for Qualitative Inference. Unpublished. https://doi.org/10.13140/RG.2.2.14428.69769", + "auto_ref": true }, { - "doi": "", - "apa": "https://bpspsychub.onlinelibrary.wiley.com/doi/pdf/10.1111/ bjop.12700", - "auto_ref": false + "doi": "10.1111/bjop.12700", + "apa": "Silverstein, P., Pennington, C. R., Branney, P., O’Connor, D. B., Lawlor, E., O’Brien, E., & Lynott, D. (2024). A registered report survey of open research practices in psychology departments in the UK and Ireland. British Journal of Psychology, 115(3), 497–534. https://doi.org/10.1111/bjop.12700", + "auto_ref": true }, { "doi": "10.36850/mr7", @@ -6024,13 +5933,13 @@ }, { "doi": "10.1002/ev.20627", - "apa": "Steltenpohl, C. N., Standiford Reyes, L., Pei, M. A., & Lee, L. E. (2024). Open Science in Qualitative Evaluation: Considerations and Opportunities. New Directions for Evaluation, 2024(184), 35–40. Portico. https://doi.org/10.1002/ev.20627", + "apa": "Steltenpohl, C. N., Standiford Reyes, L., Pei, M. A., & Lee, L. E. (2024). Open Science in Qualitative Evaluation: Considerations and Opportunities. New Directions for Evaluation, 2024(184), 35–40. https://doi.org/10.1002/ev.20627", "auto_ref": true }, { - "doi": "", - "apa": "Tamminen, A. Bundon, B. Smith, M. H. McDonough, Z. A. Poucher & M. Atkinson (2021) Considerations for making informed choices about engaging in open qualitative research, Qualitative Research in Sport, Exercise and Health, 13:5, 864-886, DOI: 10.1080/2159676X.2021.1901138", - "auto_ref": false + "doi": "10.1080/2159676X.2021.1901138", + "apa": "Tamminen, K. A., Bundon, A., Smith, B., McDonough, M. H., Poucher, Z. A., & Atkinson, M. (2021). Considerations for making informed choices about engaging in open qualitative research. Qualitative Research in Sport, Exercise and Health, 13(5), 864–886. https://doi.org/10.1080/2159676x.2021.1901138", + "auto_ref": true }, { "doi": "10.1016/j.psychsport.2017.12.010", @@ -6055,72 +5964,7 @@ }, { "doi": "10.31219/osf.io/ga5fb_v1", - "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", - "auto_ref": true - }, - { - "doi": "10.31219/osf.io/6z9c3_v1", - "apa": "Field, S. M. (2025). Open With Care! Consent, Context, and Co-production in Open Qualitative Research. https://doi.org/10.31219/osf.io/6z9c3_v1", - "auto_ref": true - }, - { - "doi": "10.1080/02615470601118662", - "apa": "Fook, J., & Askeland, G. A. (2007). Challenges of Critical Reflection: ‘Nothing Ventured, Nothing Gained.’ Social Work Education, 26(5), 520–533. https://doi.org/10.1080/02615470601118662", - "auto_ref": true - }, - { - "doi": "10.1080/14623943.2015.1134471", - "apa": "Goldblatt, H., & Band-Winterstein, T. (2016). From understanding to insight: using reflexivity to promote students’ learning of qualitative research. Reflective Practice, 17(2), 100–113. https://doi.org/10.1080/14623943.2015.1134471", - "auto_ref": true - }, - { - "doi": "10.1177/1077800403262360", - "apa": "Guillemin, M., & Gillam, L. (2004). Ethics, Reflexivity, and “Ethically Important Moments” in Research. Qualitative Inquiry, 10(2), 261–280. https://doi.org/10.1177/1077800403262360", - "auto_ref": true - }, - { - "doi": "10.1285/i24212113v5i2p63", - "apa": "Hope, E. C., Brugh, C. S., & Nance, A. (2019). In search of a critical stance: Applying qualitative research practices for critical quantitative research in psychology (Version 1.0) [Data set]. University of Salento. https://doi.org/10.1285/I24212113V5I2P63", - "auto_ref": true - }, - { - "doi": "10.1111/spc3.12735", - "apa": "Jamieson, M. K., Govaart, G. H., & Pownall, M. (2023). Reflexivity in quantitative research: A rationale and beginner’s guide. Social and Personality Psychology Compass, 17(4). Portico. https://doi.org/10.1111/spc3.12735", - "auto_ref": true - }, - { - "doi": "10.1080/14780887.2017.1400144", - "apa": "Lazard, L., & McAvoy, J. (2017). Doing reflexivity in psychological research: What’s the point? What’s the practice? Qualitative Research in Psychology, 17(2), 159–177. https://doi.org/10.1080/14780887.2017.1400144", - "auto_ref": true - }, - { - "doi": "10.1177/1609406916681005", - "apa": "Mao, L., Mian Akram, A., Chovanec, D., & Underwood, M. L. (2016). Embracing the Spiral. International Journal of Qualitative Methods, 15(1). https://doi.org/10.1177/1609406916681005", - "auto_ref": true - }, - { - "doi": "", - "apa": "Pham, J., Perry-Wilson, T., Holmes, K., Schroeder, G., Reyes, A., & Pollok, M. (2025). The power of decolonizing research practices. The Professional Counselor, 15(1). https://tpcjournal.nbcc.org/the-power-of-decolonizing-research-practices", - "auto_ref": false - }, - { - "doi": "10.1002/ecs2.70168", - "apa": "Phurisamban, R., Luna, E., Eyster, H. N., Chignell, S., & Koppes, M. (2025). Shedding the cloak of neutrality: A guide for reflexive practices to make the sciences more inclusive and just. Ecosphere, 16(4). Portico. https://doi.org/10.1002/ecs2.70168", - "auto_ref": true - }, - { - "doi": "10.1007/s40037-018-0412-2", - "apa": "Reid, A.-M., Brown, J. M., Smith, J. M., Cope, A. C., & Jamieson, S. (2018). Ethical dilemmas and reflexivity in qualitative research. Perspectives on Medical Education, 7(2), 69–75. https://doi.org/10.1007/s40037-018-0412-2", - "auto_ref": true - }, - { - "doi": "10.1007/s13194-020-00324-7", - "apa": "Field, S. M., & Derksen, M. (2020). Experimenter as automaton; experimenter as human: exploring the position of the researcher in scientific research. European Journal for Philosophy of Science, 11(1). https://doi.org/10.1007/s13194-020-00324-7", - "auto_ref": true - }, - { - "doi": "10.31219/osf.io/ga5fb_v1", - "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", + "apa": "Field, S. M., & Pownall, M. (2025). Subjectivity is a Feature, not a Flaw: A Call to Unsilence the Human Element in Science. https://doi.org/10.31219/osf.io/ga5fb_v1", "auto_ref": true }, { @@ -6155,7 +5999,7 @@ }, { "doi": "10.1111/spc3.12735", - "apa": "Jamieson, M. K., Govaart, G. H., & Pownall, M. (2023). Reflexivity in quantitative research: A rationale and beginner’s guide. Social and Personality Psychology Compass, 17(4). Portico. https://doi.org/10.1111/spc3.12735", + "apa": "Jamieson, M. K., Govaart, G. H., & Pownall, M. (2023). Reflexivity in quantitative research: A rationale and beginner’s guide. Social and Personality Psychology Compass, 17(4). https://doi.org/10.1111/spc3.12735", "auto_ref": true }, { @@ -6231,7 +6075,7 @@ }, { "doi": "10.1080/13803611.2024.2314526", - "apa": "Pownall, M. (2024). Is replication\n possible\n in qualitative research? A response to Makel et al. (2022). Educational Research and Evaluation, 29(1–2), 104–110. https://doi.org/10.1080/13803611.2024.2314526", + "apa": "Pownall, M. (2024). Is replication possible in qualitative research? A response to Makel et al. (2022). Educational Research and Evaluation, 29(1–2), 104–110. https://doi.org/10.1080/13803611.2024.2314526", "auto_ref": true }, { @@ -6262,7 +6106,7 @@ }, { "doi": "10.1080/13645570310001640699", - "apa": "FIELDING, N. (2004). Getting the most from archived qualitative data: epistemological, practical and professional obstacles. International Journal of Social Research Methodology, 7(1), 97–104. https://doi.org/10.1080/13645570310001640699", + "apa": "Fielding, N. (2004). Getting the most from archived qualitative data: epistemological, practical and professional obstacles. International Journal of Social Research Methodology, 7(1), 97–104. https://doi.org/10.1080/13645570310001640699", "auto_ref": true }, { @@ -6338,7 +6182,7 @@ }, { "doi": "10.1002/ev.1427", - "apa": "Lincoln, Y. S., & Guba, E. G. (1986). But is it rigorous? Trustworthiness and authenticity in naturalistic evaluation. New Directions for Program Evaluation, 1986(30), 73–84. Portico. https://doi.org/10.1002/ev.1427", + "apa": "Lincoln, Y. S., & Guba, E. G. (1986). But is it rigorous? Trustworthiness and authenticity in naturalistic evaluation. New Directions for Program Evaluation, 1986(30), 73–84. https://doi.org/10.1002/ev.1427", "auto_ref": true }, { @@ -6348,7 +6192,7 @@ }, { "doi": "10.1046/j.1365-2648.2003.02509.x", - "apa": "Mill, J. E., & Ogilvie, L. D. (2003). Establishing methodological rigour in international qualitative nursing research: a case study from Ghana. Journal of Advanced Nursing, 41(1), 80–87. Portico. https://doi.org/10.1046/j.1365-2648.2003.02509.x", + "apa": "Mill, J. E., & Ogilvie, L. D. (2003). Establishing methodological rigour in international qualitative nursing research: a case study from Ghana. Journal of Advanced Nursing, 41(1), 80–87. https://doi.org/10.1046/j.1365-2648.2003.02509.x", "auto_ref": true }, { @@ -6358,7 +6202,7 @@ }, { "doi": "10.1111/bjhp.12393", - "apa": "Shaw, R. L., Bishop, F. L., Horwood, J., Chilcot, J., & Arden, M. A. (2019). Enhancing the quality and transparency of qualitative research methods in health psychology. British Journal of Health Psychology, 24(4), 739–745. Portico. https://doi.org/10.1111/bjhp.12393", + "apa": "Shaw, R. L., Bishop, F. L., Horwood, J., Chilcot, J., & Arden, M. A. (2019). Enhancing the quality and transparency of qualitative research methods in health psychology. British Journal of Health Psychology, 24(4), 739–745. https://doi.org/10.1111/bjhp.12393", "auto_ref": true }, { @@ -6424,7 +6268,7 @@ }, { "doi": "10.1111/bjhp.12393", - "apa": "Shaw, R. L., Bishop, F. L., Horwood, J., Chilcot, J., & Arden, M. A. (2019). Enhancing the quality and transparency of qualitative research methods in health psychology. British Journal of Health Psychology, 24(4), 739–745. Portico. https://doi.org/10.1111/bjhp.12393", + "apa": "Shaw, R. L., Bishop, F. L., Horwood, J., Chilcot, J., & Arden, M. A. (2019). Enhancing the quality and transparency of qualitative research methods in health psychology. British Journal of Health Psychology, 24(4), 739–745. https://doi.org/10.1111/bjhp.12393", "auto_ref": true }, { @@ -6492,7 +6336,7 @@ }, { "doi": "10.1111/dewb.12024", - "apa": "Kombe, F., Anunobi, E. N., Tshifugula, N. P., Wassenaar, D., Njadingwe, D., Mwalukore, S., Chinyama, J., Randrianasolo, B., Akindeh, P., Dlamini, P. S., Ramiandrisoa, F. N., & Ranaivo, N. (2013). Promoting Research Integrity in Africa: An African Voice of Concern on Research Misconduct and the Way Forward. Developing World Bioethics, 14(3), 158–166. Portico. https://doi.org/10.1111/dewb.12024", + "apa": "Kombe, F., Anunobi, E. N., Tshifugula, N. P., Wassenaar, D., Njadingwe, D., Mwalukore, S., Chinyama, J., Randrianasolo, B., Akindeh, P., Dlamini, P. S., Ramiandrisoa, F. N., & Ranaivo, N. (2013). Promoting Research Integrity in Africa: An African Voice of Concern on Research Misconduct and the Way Forward. Developing World Bioethics, 14(3), 158–166. https://doi.org/10.1111/dewb.12024", "auto_ref": true }, { @@ -6735,8 +6579,8 @@ }, { "doi": "10.1038/520429a", - "apa": "Hicks, D., Wouters, P., Waltman, L., de Rijcke, S., & Rafols, I. (2015). The Leiden Manifesto for research metrics. Nature, 520(7548), 429–431. https://doi.org/10.1038/520429a — Ten principles for responsible research evaluation (e.g. avoid misplaced concreteness of metrics, protect qualitative judgment, account for diversity in fields). A direct response to metric-driven distortions, aiming to realign incentives with integrity and quality.", - "auto_ref": false + "apa": "Hicks, D., Wouters, P., Waltman, L., de Rijcke, S., & Rafols, I. (2015). Bibliometrics: The Leiden Manifesto for research metrics. Nature, 520(7548), 429–431. https://doi.org/10.1038/520429a", + "auto_ref": true }, { "doi": "10.1007/s11948-016-9858-y", @@ -6855,7 +6699,7 @@ }, { "doi": "10.1093/scipol/scad052", - "apa": "Wang, J., Halffman, W., & Horbach, S. P. J. M. (2023). Listing quality: Chinese journal lists in incoherent valuation regimes. Science and Public Policy, 51(1), 55–66. https://doi.org/10.1093/scipol/scad052", + "apa": "Wang, J., Halffman, W., & Horbach, S. P. J. M. (2023). Listing quality: Chinese journal lists in incoherent valuation regimes. Science and Public Policy, 51(1), 55–66. https://doi.org/10.1093/scipol/scad052", "auto_ref": true }, { @@ -6911,7 +6755,7 @@ }, { "doi": "10.1111/bcp.15503", - "apa": "Haslberger, M., Schorr, S. G., Strech, D., & Haven, T. (2022). Preclinical efficacy in investigator’s brochures: Stakeholders’ views on measures to improve completeness and robustness. British Journal of Clinical Pharmacology, 89(1), 340–350. Portico. https://doi.org/10.1111/bcp.15503", + "apa": "Haslberger, M., Schorr, S. G., Strech, D., & Haven, T. (2022). Preclinical efficacy in investigator’s brochures: Stakeholders’ views on measures to improve completeness and robustness. British Journal of Clinical Pharmacology, 89(1), 340–350. https://doi.org/10.1111/bcp.15503", "auto_ref": true }, { @@ -6951,7 +6795,7 @@ }, { "doi": "10.1002/leap.1312", - "apa": "Horbach, S. P. J. M., Hepkema, W. M., & Halffman, W. (2020). The Platform for Responsible Editorial Policies: An initiative to foster editorial transparency in scholarly publishing. Learned Publishing, 33(3), 340–344. Portico. https://doi.org/10.1002/leap.1312", + "apa": "Horbach, S. P. J. M., Hepkema, W. M., & Halffman, W. (2020). The Platform for Responsible Editorial Policies: An initiative to foster editorial transparency in scholarly publishing. Learned Publishing, 33(3), 340–344. https://doi.org/10.1002/leap.1312", "auto_ref": true }, { @@ -7223,7 +7067,7 @@ }, { "doi": "10.1111/dewb.12014", - "apa": "Kamuya, D. M., Marsh, V., Kombe, F. K., Geissler, P. W., & Molyneux, S. C. (2013). Engaging Communities to Strengthen Research Ethics in Low‐Income Settings: Selection and Perceptions of Members of a Network of Representatives in Coastal Kenya. Developing World Bioethics, 13(1), 10–20. Portico. https://doi.org/10.1111/dewb.12014", + "apa": "Kamuya, D. M., Marsh, V., Kombe, F. K., Geissler, P. W., & Molyneux, S. C. (2013). Engaging Communities to Strengthen Research Ethics in Low‐Income Settings: Selection and Perceptions of Members of a Network of Representatives in Coastal Kenya. Developing World Bioethics, 13(1), 10–20. https://doi.org/10.1111/dewb.12014", "auto_ref": true }, { From f19b9cdf77d7eff46bfde654f8f2f34d1f8a4f09 Mon Sep 17 00:00:00 2001 From: Richard Dushime <45734838+richarddushime@users.noreply.github.com> Date: Wed, 4 Nov 2026 18:31:30 +0100 Subject: [PATCH 5/7] Update scripts/parse_clusters_to_sheet.py Co-authored-by: cubic-dev-ai[bot] <191113872+cubic-dev-ai[bot]@users.noreply.github.com> --- scripts/parse_clusters_to_sheet.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/scripts/parse_clusters_to_sheet.py b/scripts/parse_clusters_to_sheet.py index d7f3d77854b..b6b13ec1124 100644 --- a/scripts/parse_clusters_to_sheet.py +++ b/scripts/parse_clusters_to_sheet.py @@ -688,7 +688,9 @@ def tidy_lookup_citation(apa, bibtex=''): if booktitle and '\n' in booktitle.group(1): full_title = ' '.join(booktitle.group(1).split()) if full_title not in apa: - apa = apa.replace(booktitle.group(1).split('\n')[0].strip(), full_title) + first_line = booktitle.group(1).split('\n')[0].strip() + if first_line: + apa = apa.replace(first_line, full_title) # Wiley records name the Portico archive as the publisher apa = re.sub(r'\. Portico\. (?=https://doi\.org/)', '. ', apa) From f098547f6ccd43694139ace5b77310c9b35ab455 Mon Sep 17 00:00:00 2001 From: Richard Dushime <45734838+richarddushime@users.noreply.github.com> Date: Wed, 4 Nov 2026 18:32:34 +0100 Subject: [PATCH 6/7] Update .github/workflows/README.md Co-authored-by: cubic-dev-ai[bot] <191113872+cubic-dev-ai[bot]@users.noreply.github.com> --- .github/workflows/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/README.md b/.github/workflows/README.md index 11034b074f4..4a05e27fe54 100644 --- a/.github/workflows/README.md +++ b/.github/workflows/README.md @@ -84,7 +84,7 @@ Triggers `deploy.yaml` after successful processing via `repository_dispatch`. -### [cluster-tests.yaml](workflows/cluster-tests.yaml) +### [cluster-tests.yaml](cluster-tests.yaml) **Clusters parser regression tests and stated sub-cluster counts** | Trigger | Runs on | From 7974787b0902ec168e50b7c614f6a3ea9580988c Mon Sep 17 00:00:00 2001 From: Richard Dushime <45734838+richarddushime@users.noreply.github.com> Date: Wed, 4 Nov 2026 18:33:10 +0100 Subject: [PATCH 7/7] Update scripts/parse_clusters_to_sheet.py Co-authored-by: cubic-dev-ai[bot] <191113872+cubic-dev-ai[bot]@users.noreply.github.com> --- scripts/parse_clusters_to_sheet.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/parse_clusters_to_sheet.py b/scripts/parse_clusters_to_sheet.py index b6b13ec1124..fe5afcf04b9 100644 --- a/scripts/parse_clusters_to_sheet.py +++ b/scripts/parse_clusters_to_sheet.py @@ -681,7 +681,7 @@ def build_publications(clusters): def tidy_lookup_citation(apa, bibtex=''): """Repair known defects in the APA text doi.org returns.""" - apa = ' '.join(apa.split()) + apa = re.sub(r'(?<=\w)\s+-(?=\w)', '-', ' '.join(apa.split())) # A line break in a conference title can cut the title off in the APA text booktitle = re.search(r'booktitle=\{([^}]*)\}', bibtex)