Issues

• log_FDR.bw does not exist

  fiberseq/FIRE#73 · Filter by author AlexanRNA opened on Sep 4, 2026

• make_fdr_table ERROR, No FIRE score threshold has an FDR < 0.05

  fiberseq/FIRE#60 · Filter by author suyanan opened on Jun 25, 2026

• how to filter alignments for downstream analysis?

  fiberseq/FIRE#57 · Filter by author zhengluo-zz opened on Jun 9, 2026

• ERROR: Requested column 22, but database file - only has fields 1 - 0

  fiberseq/FIRE#51 · Filter by author suyanan opened on May 19, 2026
  9

• Question about training a species-specific FIRE model for maize (CTCF absence)

  fiberseq/FIRE#50 · Filter by author yjiang296 opened on Apr 25, 2026
  5

• MissingInputException in rule fiber_locations

  fiberseq/FIRE#49 · Filter by author yjiang296 opened on Apr 10, 2026
  1

• ft fire output

  fiberseq/FIRE#46 · Filter by author GabbyLee123 opened on Nov 11, 2025

• The number of FDR-FIRE-peaks differs significantly between version 0.0.7 and version 0.1.3

  fiberseq/FIRE#43 · Filter by author bio-Tao opened on Oct 9, 2025

• Issue with Arabidopsis data

  fiberseq/FIRE#39 · Filter by author dverac opened on May 21, 2025
  2

• polars.exceptions.ComputeError: could not parse - as dtype i64 at column 'score' (column number 6)

  fiberseq/FIRE#35 · Filter by author jazsakr opened on Mar 12, 2025
  14

• FIRE on targeted seq data: fiber-locations-shuffled.bed.gz is created empty

  fiberseq/FIRE#7 · Filter by author Strausyatina opened on Dec 29, 2023
  7