Gene expression data

[LorenzoMerotto]

Hello,
I am wondering if the unprocessed bulk RNAseq data matching the IHC estimates are available. I have looked at the paper but found no reference to this. Ideally I would prefer to have the raw FASTQ files.

Thanks!

[ellispatrick]

Hi Lorenzo, Sorry, I'm on my phone but figured you'd prefer a quick reply than a good one. All of the rosmap data is available on synapse. You'll probably need to apply to get access to the fastq files. Cheers, Ellis Get Outlook for Android<https://aka.ms/AAb9ysg>

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________________________________ From: LorenzoMerotto ***@***.***> Sent: Tuesday, July 18, 2023 6:16:43 pm To: ellispatrick/CortexCellDeconv ***@***.***> Cc: Subscribed ***@***.***> Subject: [ellispatrick/CortexCellDeconv] Gene expression data (Issue #4) Hello, I am wondering if the unprocessed bulk RNAseq data matching the IHC estimates are available. I have looked at the paper but found no reference to this. Ideally I would prefer to have the raw FASTQ files. Thanks! — Reply to this email directly, view it on GitHub<#4>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ACAALBKJ4KHARUHGJMIB5XTXQZA55ANCNFSM6AAAAAA2OAP4CM>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[LorenzoMerotto]

Hello @ellispatrick and thank you for your prompt response.
I will apply for the access. In the meantime, do you maybe have a table with the un normalized counts?
Thanks :)