+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+SeqAn Usage Statistics
+ +This is an automatically generated report that evaluates the current
+SeqAn user statistics. The data is taken from the file
+log_file_name preprocessed by a script
+global.R.
+
+
+
+
+Timeframe
+| What | +Date | +
|---|---|
| From | +2020-02-23 | +
| To | +2025-01-25 | +
| Today | +2026-11-05 | +
The timeframe spans 257 weeks and 0 days.
+This is equivalent to 1,799 days or 257.00 weeks.
+
+
+
+
+The Data
+The collected information contains the following columns:
+| ID | +Name | +Description | +
|---|---|---|
| 1 | +app | +Application name | +
| 2 | +ip | +IP address | +
| 3 | +calls | +Number of calls | +
| 4 | +date | +Date of the call | +
| 5 | +version | +Application version | +
| 6 | +cpu | +CPU-Mode (32/64-bit) | +
| 7 | +os | +The operating system | +
| 8 | +who | +How the call was sent (e.g., library, KNIME) | +
| 9 | +clustered | +Call originates from known cluster | +
| 10 | +country_code | +Country code¹ | +
| 11 | +country | +Country¹ | +
| 12 | +region | +Region¹ | +
| 13 | +city | +City¹ | +
| 14 | +longitude | +Longitude¹ | +
| 15 | +latitude | +Latidude¹ | +
| 16 | +DevelopedBy | +Tooltag (de.NBI, extern) | +
+¹ Derived from IP +
+
+
+Citations
+The number of citations of a set of important selected +publications about or using SeqAn:
+
+
+Downloads
+
+
+
+
+
+
+
+Libraries
+| +Start + | ++End + | ++GitHub Downloads + | ++Conda Downloads + | ++PyPI Downloads + | ++Total Downloads + | +
|---|---|---|---|---|---|
| +2025 Q1 + | ++2025 Q4 + | ++943.0 + | ++19593.0 + | ++0.0 + | ++20536.0 + | +
| +2025 Q4 + | ++2026 Q3 + | ++7918.0 + | ++16309.0 + | ++0.0 + | ++24227.0 + | +
| +2026 Q1 + | ++2026 Q4 + | ++7984.0 + | ++11258.0 + | ++0.0 + | ++19242.0 + | +
+
+
+
+
+
+
+Apps
+| +Start + | ++End + | ++GitHub Downloads + | ++Conda Downloads + | ++PyPI Downloads + | ++Total Downloads + | +
|---|---|---|---|---|---|
| +2025 Q1 + | ++2025 Q4 + | ++6.0 + | ++161128.0 + | ++0.0 + | ++161134.0 + | +
| +2025 Q4 + | ++2026 Q3 + | ++0.0 + | ++97116.0 + | ++0.0 + | ++97116.0 + | +
| +2026 Q1 + | ++2026 Q4 + | ++0.0 + | ++58988.0 + | ++0.0 + | ++58988.0 + | +
+
+
+
+
+
+
+
+
+
+GitHub Issues and PR
+| +Start + | ++End + | ++Issues Opened + | ++Issues Closed + | ++PRs Opened + | ++PRs Closed + | +
|---|---|---|---|---|---|
| +2025 Q1 + | ++2025 Q4 + | ++19.0 + | ++18.0 + | ++636.0 + | ++623.0 + | +
| +2025 Q4 + | ++2026 Q3 + | ++12.0 + | ++10.0 + | ++499.0 + | ++504.0 + | +
| +2026 Q1 + | ++2026 Q4 + | ++12.0 + | ++11.0 + | ++416.0 + | ++413.0 + | +
+
+General Usage
+To display the general usage, the plot shows the cumulative usage of +all application summed together over the given time period.
+
+
+Worldmap
+ + ++ +
+ +
+
+Top 10 Applications
+In the following the data was aggregated by application. The first +figure pictures the sum of all calls of each application, while the +second shows the number of unique users. The figures differentiate +between individual and cluster calls/users. The term ‘cluster +calls/users’ refers to IP addresses that were previously identified as +part of a cluster, but left in the dataset as a representative for the +corresponding cluster.
+ + +
+
+
+
+
+Operating System
+For an overview over the distribution of different operating systems +the data was aggregated by column ‘os’. As before, the first figure +pictures the sum of all calls of each operating system, while the second +shows the number of unique users.
+ + +
+
+
+
+
+New Unique User Statistic
+The bar plots on the left display the unique new users. New Unique +users means that each IP Adress tracked only appears once in this +statistic at the time point of it’s first occurence. The line plot on +the right displays the same information as a line instead of bars. The +red line on the left plot shows the cumulative sum of the new unique +users.
+ + +
+
+
+
+
+
+
+
+
+Total Calls Statistic
+For comparison the following plots show the toal counts of usages +(calls) per month, accumulated and as a line plot.
+ + +
+
+
+
+
+
+
+
+
+
+Distribution of Countries and Cities
+| +Application + | ++Countries + | ++Cities + | ++Country with most calls + | ++Calls from Country + | ++City with most calls + | ++Calls from City + | +
|---|---|---|---|---|---|---|
| +razers3 + | ++51.0 + | ++284.0 + | ++United States of America + | ++847.0 + | ++Ashburn + | ++174.0 + | +
| +flexbar + | ++24.0 + | ++44.0 + | ++United States of America + | ++44.0 + | ++Columbus + | ++25.0 + | +
| +GenMap + | ++19.0 + | ++38.0 + | ++Japan + | ++24.0 + | ++Tokyo + | ++24.0 + | +
| +yara_indexer + | ++18.0 + | ++35.0 + | ++Japan + | ++66.0 + | ++Tokyo + | ++64.0 + | +
| +yara_mapper + | ++14.0 + | ++41.0 + | ++United States of America + | ++85.0 + | ++Tokyo + | ++65.0 + | +
| +RLM + | ++13.0 + | ++23.0 + | ++United States of America + | ++15.0 + | ++Tokyo + | ++7.0 + | +
| +adaptFinder + | ++11.0 + | ++22.0 + | ++United States of America + | ++9.0 + | ++Tempe + | ++3.0 + | +
| +mason_simulator + | ++10.0 + | ++26.0 + | ++United States of America + | ++19.0 + | ++Shanghai + | ++3.0 + | +
| +mason_genome + | ++7.0 + | ++11.0 + | ++United States of America + | ++5.0 + | ++Beijing + | ++2.0 + | +
| +alf + | ++4.0 + | ++5.0 + | ++United States of America + | ++5.0 + | ++North Bergen + | ++4.0 + | +
| +gustaf_mate_joining + | ++4.0 + | ++5.0 + | ++United States of America + | ++4.0 + | ++North Bergen + | ++3.0 + | +
| +mason_variator + | ++4.0 + | ++9.0 + | ++United States of America + | ++6.0 + | ++Amsterdam + | ++1.0 + | +
| +seqan_tcoffee + | ++4.0 + | ++6.0 + | ++United States of America + | ++3.0 + | ++Fontana Liri + | ++1.0 + | +
| +Indexer + | ++3.0 + | ++3.0 + | ++United States of America + | ++2.0 + | ++North Bergen + | ++2.0 + | +
| +Penguin_Parade + | ++3.0 + | ++3.0 + | ++United States of America + | ++3.0 + | ++North Bergen + | ++3.0 + | +
| +Raptor + | ++3.0 + | ++6.0 + | ++United States of America + | ++21.0 + | ++North Bergen + | ++18.0 + | +
| +Test + | ++3.0 + | ++3.0 + | ++Switzerland + | ++2.0 + | ++Zurich + | ++2.0 + | +
| +compute_gain + | ++3.0 + | ++3.0 + | ++Finland + | ++1.0 + | ++Amsterdam + | ++1.0 + | +
| +dfi + | ++3.0 + | ++3.0 + | ++United States of America + | ++2.0 + | ++North Bergen + | ++2.0 + | +
| +fiona_illumina + | ++3.0 + | ++3.0 + | ++Denmark + | ++1.0 + | ++Amsterdam + | ++1.0 + | +
| +fx_bam_coverage + | ++3.0 + | ++3.0 + | ++Brazil + | ++1.0 + | ++Franca + | ++1.0 + | +
| +lambda + | ++3.0 + | ++6.0 + | ++United States of America + | ++5.0 + | ++Honolulu + | ++2.0 + | +
| +lambda2 + | ++3.0 + | ++3.0 + | ++Colombia + | ++1.0 + | ++Bucaramanga + | ++1.0 + | +
| +lambda3 + | ++3.0 + | ++3.0 + | ++Switzerland + | ++16.0 + | ++Zurich + | ++16.0 + | +
| +lambda_indexer + | ++3.0 + | ++5.0 + | ++United States of America + | ++5.0 + | ++Honolulu + | ++3.0 + | +
| +needle + | ++3.0 + | ++4.0 + | ++Spain + | ++194.0 + | ++Vigo + | ++194.0 + | +
| +ovgraphbuild + | ++3.0 + | ++4.0 + | ++United States of America + | ++6.0 + | ++Detroit + | ++5.0 + | +
| +rabema_prepare_sam + | ++3.0 + | ++3.0 + | ++Italy + | ++1.0 + | ++Amsterdam + | ++1.0 + | +
| +roi_feature_projection + | ++3.0 + | ++4.0 + | ++Brazil + | ++2.0 + | ++Al Mazzunah + | ++1.0 + | +
| +samcat + | ++3.0 + | ++3.0 + | ++Denmark + | ++1.0 + | ++Frederiksberg + | ++1.0 + | +
| +stellar + | ++3.0 + | ++6.0 + | ++United States of America + | ++7.0 + | ++North Bergen + | ++4.0 + | +
| +fiona + | ++2.0 + | ++6.0 + | ++United States of America + | ++6.0 + | ++Charlotte + | ++2.0 + | +
| +gustaf + | ++2.0 + | ++2.0 + | ++Finland + | ++1.0 + | ++Espoo + | ++1.0 + | +
| +insegt + | ++2.0 + | ++5.0 + | ++United States of America + | ++5.0 + | ++North Bergen + | ++2.0 + | +
| +lara + | ++2.0 + | ++2.0 + | ++China + | ++2.0 + | ++Wuhan + | ++2.0 + | +
| +my_program + | ++2.0 + | ++2.0 + | ++Switzerland + | ++3.0 + | ++North Bergen + | ++3.0 + | +
| +mygit + | ++2.0 + | ++2.0 + | ++Netherlands (Kingdom of the) + | ++2.0 + | ++Amsterdam + | ++2.0 + | +
| +pair_align + | ++2.0 + | ++2.0 + | ++Indonesia + | ++1.0 + | ++Mulia + | ++1.0 + | +
| +rabema_evaluate + | ++2.0 + | ++3.0 + | ++United States of America + | ++2.0 + | ++Chita + | ++1.0 + | +
| +sak + | ++2.0 + | ++2.0 + | ++China + | ++1.0 + | ++Beijing + | ++1.0 + | +
| +sam2matrix + | ++2.0 + | ++5.0 + | ++United States of America + | ++3.0 + | ++Columbus + | ++1.0 + | +
| +slimm + | ++2.0 + | ++2.0 + | ++Netherlands (Kingdom of the) + | ++2.0 + | ++Nijmegen + | ++2.0 + | +
| +tree_recon + | ++2.0 + | ++3.0 + | ++United States of America + | ++4.0 + | ++North Bergen + | ++3.0 + | +
| +AnnotateBam + | ++1.0 + | ++1.0 + | ++China + | ++2.0 + | ++Hangzhou + | ++2.0 + | +
| +Contamination + | ++1.0 + | ++1.0 + | ++China + | ++2.0 + | ++Hangzhou + | ++2.0 + | +
| +Demultiplexer + | ++1.0 + | ++1.0 + | ++Malaysia + | ++1.0 + | ++Kampung Kadok + | ++1.0 + | +
| +HmnTrimmer + | ++1.0 + | ++1.0 + | ++Hong Kong + | ++1.0 + | ++Hong Kong + | ++1.0 + | +
| +Mapper + | ++1.0 + | ++1.0 + | ++Switzerland + | ++1.0 + | ++Zurich + | ++1.0 + | +
| +MergeBam + | ++1.0 + | ++1.0 + | ++China + | ++2.0 + | ++Hangzhou + | ++2.0 + | +
| +MinionReadAnalyzer + | ++1.0 + | ++1.0 + | ++China + | ++2.0 + | ++Shanghai + | ++2.0 + | +
| +Search + | ++1.0 + | ++1.0 + | ++Singapore + | ++1.0 + | ++Singapore + | ++1.0 + | +
| +bam2roi + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++North Bergen + | ++1.0 + | +
| +bisar + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++San Francisco + | ++1.0 + | +
| +casbar + | ++1.0 + | ++2.0 + | ++United States of America + | ++2.0 + | ++Madison + | ++1.0 + | +
| +corrprofile + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++Columbus + | ++1.0 + | +
| +count + | ++1.0 + | ++1.0 + | ++New Zealand + | ++1.0 + | ++Christchurch + | ++1.0 + | +
| +customgenomegenerator + | ++1.0 + | ++1.0 + | ++Switzerland + | ++2.0 + | ++Zurich + | ++2.0 + | +
| +four2three + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++North Bergen + | ++1.0 + | +
| +fx_fastq_stats + | ++1.0 + | ++2.0 + | ++United States of America + | ++2.0 + | ++Ashburn + | ++1.0 + | +
| +ibf_bitscore + | ++1.0 + | ++1.0 + | ++Argentina + | ++1.0 + | ++Salta + | ++1.0 + | +
| +join + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++North Bergen + | ++1.0 + | +
| +kgl_phylo + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++Little Rock + | ++1.0 + | +
| +mason_frag_sequencing + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++North Bergen + | ++1.0 + | +
| +mason_materializer + | ++1.0 + | ++2.0 + | ++United States of America + | ++2.0 + | ++Bellevue + | ++1.0 + | +
| +mason_methylation + | ++1.0 + | ++1.0 + | ++Korea (the Republic of) + | ++1.0 + | ++Seongnam + | ++1.0 + | +
| +mason_splicing + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++North Bergen + | ++1.0 + | +
| +mhc + | ++1.0 + | ++1.0 + | ++Taiwan (Province of China) + | ++1.0 + | ++Taipei + | ++1.0 + | +
| +micro_razers + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++North Bergen + | ++1.0 + | +
| +minions + | ++1.0 + | ++1.0 + | ++Switzerland + | ++16.0 + | ++Zurich + | ++16.0 + | +
| +pizzly + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++Honolulu + | ++1.0 + | +
| +rabema_build_gold_standard + | ++1.0 + | ++2.0 + | ++United States of America + | ++2.0 + | ++Cupertino + | ++1.0 + | +
| +razers + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++North Bergen + | ++1.0 + | +
| +select + | ++1.0 + | ++1.0 + | ++New Zealand + | ++1.0 + | ++Christchurch + | ++1.0 + | +
| +singleCellPipe + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++Tampa + | ++1.0 + | +
| +slimm_build + | ++1.0 + | ++1.0 + | ++United States of America + | ++1.0 + | ++North Bergen + | ++1.0 + | +
| +snp_store + | ++1.0 + | ++3.0 + | ++United States of America + | ++4.0 + | ++North Bergen + | ++2.0 + | +
| +st_index_search + | ++1.0 + | ++2.0 + | ++United States of America + | ++3.0 + | ++North Bergen + | ++2.0 + | +
| +umis_per_barcode + | ++1.0 + | ++1.0 + | ++New Zealand + | ++1.0 + | ++Christchurch + | ++1.0 + | +
| +valik + | ++1.0 + | ++1.0 + | ++United States of America + | ++2.0 + | ++Atlanta + | ++2.0 + | +
+
+
+
+
+
+
+
+
+
+Daily and Weekly Usage
+| +Application + | ++Calls + | ++Average per Day + | ++Average per Week + | +
|---|---|---|---|
| +razers3 + | ++2147.0 + | ++1.19344 + | ++8.3541 + | +
| +yara_mapper + | ++240.0 + | ++0.13341 + | ++0.9339 + | +
| +needle + | ++199.0 + | ++0.11062 + | ++0.7743 + | +
| +yara_indexer + | ++192.0 + | ++0.10673 + | ++0.7471 + | +
| +flexbar + | ++93.0 + | ++0.05170 + | ++0.3619 + | +
| +GenMap + | ++78.0 + | ++0.04336 + | ++0.3035 + | +
| +RLM + | ++36.0 + | ++0.02001 + | ++0.1401 + | +
| +mason_simulator + | ++31.0 + | ++0.01723 + | ++0.1206 + | +
| +adaptFinder + | ++26.0 + | ++0.01445 + | ++0.1012 + | +
| +Raptor + | ++24.0 + | ++0.01334 + | ++0.0934 + | +
| +lambda3 + | ++19.0 + | ++0.01056 + | ++0.0739 + | +
| +minions + | ++16.0 + | ++0.00889 + | ++0.0623 + | +
| +mason_genome + | ++12.0 + | ++0.00667 + | ++0.0467 + | +
| +ovgraphbuild + | ++12.0 + | ++0.00667 + | ++0.0467 + | +
| +mason_variator + | ++9.0 + | ++0.00500 + | ++0.0350 + | +
| +stellar + | ++9.0 + | ++0.00500 + | ++0.0350 + | +
| +alf + | ++8.0 + | ++0.00445 + | ++0.0311 + | +
| +lambda_indexer + | ++8.0 + | ++0.00445 + | ++0.0311 + | +
| +fiona + | ++7.0 + | ++0.00389 + | ++0.0272 + | +
| +gustaf_mate_joining + | ++7.0 + | ++0.00389 + | ++0.0272 + | +
| +lambda + | ++7.0 + | ++0.00389 + | ++0.0272 + | +
| +insegt + | ++6.0 + | ++0.00334 + | ++0.0233 + | +
| +my_program + | ++6.0 + | ++0.00334 + | ++0.0233 + | +
| +seqan_tcoffee + | ++6.0 + | ++0.00334 + | ++0.0233 + | +
| +Penguin_Parade + | ++5.0 + | ++0.00278 + | ++0.0195 + | +
| +sam2matrix + | ++5.0 + | ++0.00278 + | ++0.0195 + | +
| +tree_recon + | ++5.0 + | ++0.00278 + | ++0.0195 + | +
| +Indexer + | ++4.0 + | ++0.00222 + | ++0.0156 + | +
| +Test + | ++4.0 + | ++0.00222 + | ++0.0156 + | +
| +dfi + | ++4.0 + | ++0.00222 + | ++0.0156 + | +
| +mygit + | ++4.0 + | ++0.00222 + | ++0.0156 + | +
| +roi_feature_projection + | ++4.0 + | ++0.00222 + | ++0.0156 + | +
| +snp_store + | ++4.0 + | ++0.00222 + | ++0.0156 + | +
| +compute_gain + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +fiona_illumina + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +fx_bam_coverage + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +lambda2 + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +lara + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +rabema_evaluate + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +rabema_prepare_sam + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +samcat + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +slimm + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +st_index_search + | ++3.0 + | ++0.00167 + | ++0.0117 + | +
| +AnnotateBam + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +Contamination + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +MergeBam + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +MinionReadAnalyzer + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +casbar + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +customgenomegenerator + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +fx_fastq_stats + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +gustaf + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +mason_materializer + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +pair_align + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +rabema_build_gold_standard + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +sak + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +valik + | ++2.0 + | ++0.00111 + | ++0.0078 + | +
| +Demultiplexer + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +HmnTrimmer + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +Mapper + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +Search + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +bam2roi + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +bisar + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +corrprofile + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +count + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +four2three + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +ibf_bitscore + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +join + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +kgl_phylo + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +mason_frag_sequencing + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +mason_methylation + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +mason_splicing + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +mhc + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +micro_razers + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +pizzly + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +razers + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +select + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +singleCellPipe + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +slimm_build + | ++1.0 + | ++0.00056 + | ++0.0039 + | +
| +umis_per_barcode + | ++1.0 + | ++0.00056 + | ++0.0039 + | +