ouroboros/python/pyproject.toml at main · ChengLabResearch/ouroboros · GitHub

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[tool.poetry]
name = "ouroboros"
version = "1.5.5"
description = "Extract ROIs (e.g. nerves, blood vessels) from multi-terabyte cloud-hosted medical scans."
authors = ["Weaver Goldman <we.goldm@gmail.com>", "David Northover <david.northover@psu.edu>"]
readme = "README.md"

[tool.poetry.scripts]
ouroboros-cli = "ouroboros.cli:main"
ouroboros-server = "ouroboros.server:main"
ouroboros-docker-server = "ouroboros.docker_server:main"
build-cli-executable = "pyinstaller:build_cli_executable"
build-server-executable = "pyinstaller:build_server_executable"

[tool.poetry.dependencies]
python = ">=3.11,<3.13"
numpy = "^1.26.4"
scipy = "1.11.2"
cloud-volume = { url = "https://github.com/den-sq/cloud-volume/releases/download/v12.7.0a0/cloud_volume-12.7.0a0-py3-none-any.whl", extras = ["all"] }
compresso = "^3.0.0"
tifffile = "^2024.6.18"
pydantic = "^2.7.4"
tqdm = "^4.66.4"
imagecodecs = "^2024.6.1"
fastapi = "^0.128.0"
asyncio = "^3.4.3"
uuid = "^1.30"
sse-starlette = "^2.3.2"
typing-extensions = "^4.14.0"
uvicorn = "^0.29.0"
opencv-python-headless = "^4.0.0"
filelock = "^3.20.0"
# memory_ipc serializes psutil's private process identity; upgrades require the
# Linux/Windows/macOS identity, clock-adjustment, and IPC compatibility tests.
psutil = "7.1.3"

# Security dependencies
urllib3 = ">=2.6.3"
protobuf = ">=6.33.5"
pillow = ">=12.1.1"
pyasn1 = ">=0.6.2"
cryptography = ">=46.0.5"
starlette = ">=0.49.1"
orjson = ">=3.11.5"

[tool.poetry.group.dev.dependencies]
pytest = "^8.2.2"
pytest-cov = "^6.1.1"
httpx = "^0.28.1"
pyinstaller = "^6.13.0"
setuptools = "^78.1.1"
coverage = "^7.6.0"
autopep8 = "^2.3.2"
viztracer = "^1.0.4"
genbadge = { version = "^1.1.0", extras = ["coverage"] }

[tool.coverage.run]
source = ["ouroboros/helpers"]
branch = true
concurrency = ["multiprocessing", "thread"]
parallel = true

[tool.coverage.report]
fail_under = 98
show_missing = true
skip_covered = false
exclude_also = [
  "raise NotImplementedError",
  "if TYPE_CHECKING:",
  "if __name__ == .__main__.:",
]

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"