diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 00000000..9b115156 --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,42 @@ +# Dependabot version updates. +# +# Alerts were already enabled on this repo, but with no config here nothing +# ever opened a PR, so advisories just accumulated (53 open at the time this +# was added). The `dependabot/*` branches on origin are leftovers from an +# older npm-only config and can be deleted. +# +# Minor/patch bumps are grouped into one PR per manifest — the dependency +# trees here are mostly transitive (torch, spacy, HF), so ungrouped updates +# would mean dozens of near-identical PRs. Majors stay separate: plotly, +# smart-open and vite have all needed judgment calls rather than a merge. +version: 2 +updates: + - package-ecosystem: "uv" + directory: "/lib" + schedule: + interval: "monthly" + open-pull-requests-limit: 5 + groups: + lib-minor-patch: + patterns: ["*"] + update-types: ["minor", "patch"] + + - package-ecosystem: "uv" + directory: "/labeler" + schedule: + interval: "monthly" + open-pull-requests-limit: 5 + groups: + labeler-minor-patch: + patterns: ["*"] + update-types: ["minor", "patch"] + + - package-ecosystem: "npm" + directory: "/web-app/browser-app" + schedule: + interval: "monthly" + open-pull-requests-limit: 5 + groups: + browser-app-minor-patch: + patterns: ["*"] + update-types: ["minor", "patch"] diff --git a/api/topologic_bundled.py b/api/topologic_bundled.py new file mode 100644 index 00000000..20506dbb --- /dev/null +++ b/api/topologic_bundled.py @@ -0,0 +1,22 @@ +"""Single-port bundled app for Docker / standalone gunicorn deployments. + +The manual-install layout expects a reverse proxy (apache, nginx) to strip +path prefixes before forwarding to the API, so `topologic_explorer:app` +registers its routes at the bare paths (`/get_topic_data/...`, `/{db}/topic/...`). + +In the Docker image we run gunicorn directly on :80 with no upstream proxy, +so the request paths arrive un-stripped. This wrapper mounts the same app +twice — once at each external prefix — so: + /topologic-api/get_topic_data/... -> /get_topic_data/... + /topologic/{db}/topic/... -> /{db}/topic/... +both reach the right handlers. +""" +from fastapi import FastAPI + +from topologic_explorer import app as base_app + +app = FastAPI() +# Order matters: the longer prefix must be registered first so +# `/topologic-api/...` is not captured by the `/topologic` mount. +app.mount("/topologic-api", base_app) +app.mount("/topologic", base_app) diff --git a/install.sh b/install.sh index 1a6674bb..4f3802b3 100755 --- a/install.sh +++ b/install.sh @@ -7,21 +7,26 @@ set -e # for GPU-accelerated spacy preprocessing). BACKEND="" RESTART="yes" +SKIP_LABELER="no" for arg in "$@"; do case "$arg" in --cpu) BACKEND="cpu" ;; --cuda) BACKEND="cuda" ;; --no-restart) RESTART="no" ;; + --skip-labeler) SKIP_LABELER="yes" ;; -h|--help) - echo "Usage: $0 [--cpu | --cuda] [--no-restart]" - echo " --cpu Install CPU-only torch; skip cupy." - echo " --cuda Install CUDA 12.4 torch + cupy-cuda12x for GPU spacy." - echo " (default) Auto-detect: use --cuda if nvidia-smi is on PATH, else --cpu." - echo " --no-restart Do not restart a running API server after installing." + echo "Usage: $0 [--cpu | --cuda] [--no-restart] [--skip-labeler]" + echo " --cpu Install CPU-only torch; skip cupy." + echo " --cuda Install CUDA 12.4 torch + cupy-cuda12x for GPU spacy." + echo " (default) Auto-detect: use --cuda if nvidia-smi is on PATH, else --cpu." + echo " --no-restart Do not restart a running API server after installing." + echo " --skip-labeler Skip the LLM topic-labeler venv (~5GB, a second torch copy)." + echo " Serve-only installs never invoke it; training with" + echo " [TOPIC_LABELING] enabled falls back to top-word labels." exit 0 ;; *) echo "Unknown argument: $arg" >&2 - echo "Usage: $0 [--cpu | --cuda] [--no-restart]" >&2 + echo "Usage: $0 [--cpu | --cuda] [--no-restart] [--skip-labeler]" >&2 exit 1 ;; esac done @@ -67,10 +72,16 @@ cp -R lib /var/lib/topologic/lib # The labeler lives in its own package + venv because it needs a newer # `transformers` than spacy-transformers allows in the main env. The main # topologic pipeline shells out to `topologic-labeler` on demand. -rm -rf /var/lib/topologic/labeler -cp -R labeler /var/lib/topologic/labeler -( cd /var/lib/topologic/labeler && UV_PROJECT_ENVIRONMENT=/var/lib/topologic/topologic_labeler_env uv sync --frozen --extra "$BACKEND" ) -sudo ln -sf /var/lib/topologic/topologic_labeler_env/bin/topologic-labeler /usr/local/bin/topologic-labeler +# --skip-labeler only declines to install/update it; an existing labeler from a +# previous run is left alone and keeps working. +if [ "$SKIP_LABELER" = "yes" ]; then + echo "Skipping the topic-labeler venv (--skip-labeler)." +else + rm -rf /var/lib/topologic/labeler + cp -R labeler /var/lib/topologic/labeler + ( cd /var/lib/topologic/labeler && UV_PROJECT_ENVIRONMENT=/var/lib/topologic/topologic_labeler_env uv sync --frozen --extra "$BACKEND" ) + sudo ln -sf /var/lib/topologic/topologic_labeler_env/bin/topologic-labeler /usr/local/bin/topologic-labeler +fi # Install the topologic script sudo 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result.returncode != 0: + # `install.sh --skip-labeler` omits the labeler entirely, so resolve + # it before running: subprocess would raise FileNotFoundError, which + # `check=False` does not suppress. A missing labeler should degrade + # exactly the way a failing one does. + labeler = shutil.which("topologic-labeler") + if labeler is None: print( - f"topologic-labeler returned {result.returncode}; topics will fall " - "back to their top-word description.", + "topic_labeling is enabled but topologic-labeler is not installed; " + "topics will fall back to their top-word description.", flush=True, ) + else: + print("Labeling topics with LLM...", flush=True) + result = subprocess.run( + [ + labeler, + topic_words_path, + "--model", topic_labeling.get("model", "google/gemma-4-E2B-it"), + "--language", topic_labeling.get("language", "English"), + ], + check=False, + ) + if result.returncode != 0: + print( + f"topologic-labeler returned {result.returncode}; topics will fall " + "back to their top-word description.", + flush=True, + ) cls.db.execute("CREATE INDEX topic_id_index ON topics(topic_id)") diff --git a/lib/uv.lock b/lib/uv.lock index 167176a9..ccedb3e8 100644 --- a/lib/uv.lock +++ 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